Wall clock time and date at job start Sun Mar 29 2020 23:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31511 * 120.00035 * 179.97438 * 7 5 3 9 9 Si 1.86801 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46865 * 89.99417 * 9 7 5 11 11 H 1.48498 * 109.47233 * 209.99802 * 9 7 5 12 12 H 1.48508 * 109.47028 * 329.99943 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 3 16 16 C 1.47599 * 119.99721 * 179.72388 * 14 13 3 17 17 C 1.39757 * 120.08749 * 359.72172 * 16 14 13 18 18 C 1.37687 * 119.90790 * 179.80910 * 17 16 14 19 19 C 1.39018 * 120.09083 * 0.44562 * 18 17 16 20 20 O 1.35708 * 119.90934 * 179.76173 * 19 18 17 21 21 C 1.38979 * 120.17605 * 359.78460 * 19 18 17 22 22 C 1.50691 * 119.95650 * 179.97438 * 21 19 18 23 23 C 1.37720 * 120.08407 * 0.02562 * 21 19 18 24 24 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 26 26 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.97000 * 120.00229 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.07993 * 120.04878 * 0.02562 * 17 16 14 32 32 H 1.07999 * 119.95097 * 180.18516 * 18 17 16 33 33 H 0.96697 * 114.00195 * 270.01650 * 20 19 18 34 34 H 1.09004 * 109.47337 * 270.02276 * 22 21 19 35 35 H 1.09004 * 109.47059 * 30.01862 * 22 21 19 36 36 H 1.09001 * 109.47303 * 150.02318 * 22 21 19 37 37 H 1.08006 * 120.04268 * 180.02562 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 5.4540 0.8795 1.3358 9 14 3.0964 0.1088 2.5701 10 1 2.8755 -1.3273 2.2633 11 1 3.7937 0.2347 3.8752 12 1 1.7876 0.8073 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3394 2.6371 -0.4299 16 6 0.0490 3.3346 -2.6240 17 6 0.9422 3.3777 -3.6979 18 6 0.5748 3.9958 -4.8721 19 6 -0.6793 4.5846 -4.9871 20 8 -1.0358 5.1971 -6.1444 21 6 -1.5686 4.5480 -3.9197 22 6 -2.9266 5.1884 -4.0495 23 6 -1.2101 3.9283 -2.7433 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 5.8771 0.4817 2.1127 30 1 2.2719 2.1232 -1.9977 31 1 1.9180 2.9238 -3.6082 32 1 1.2635 4.0269 -5.7035 33 1 -0.8088 6.1364 -6.1784 34 1 -2.8695 6.2291 -3.7306 35 1 -3.2512 5.1443 -5.0892 36 1 -3.6412 4.6549 -3.4228 37 1 -1.9020 3.8999 -1.9144 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231034712.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:25 Heat of formation + Delta-G solvation = -59.765910 kcal Electronic energy + Delta-G solvation = -19658.658438 eV Core-core repulsion = 16593.986071 eV Total energy + Delta-G solvation = -3064.672367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.26441 -38.94922 -36.60739 -35.28797 -33.15014 -32.27260 -31.51407 -30.01074 -27.65864 -26.76170 -23.75277 -22.54163 -22.05661 -20.62501 -19.62513 -18.43327 -17.69988 -16.29387 -16.22269 -15.57124 -15.34201 -14.77553 -14.55914 -14.13927 -13.62450 -13.49962 -13.30401 -13.04999 -12.65787 -12.47967 -12.13021 -12.01946 -11.98889 -11.77589 -11.61877 -11.08069 -10.90928 -10.63421 -10.55984 -9.93526 -9.59814 -9.26126 -9.20474 -8.94542 -8.77114 -8.62757 -8.07692 -6.22461 -4.25203 0.79915 1.25435 3.04041 3.23013 3.34945 3.40030 3.87625 3.92275 4.08819 4.30641 4.66862 4.75231 5.06970 5.11302 5.22262 5.27137 5.44392 5.52416 5.59417 5.82799 5.96729 5.98257 6.02649 6.14705 6.20670 6.30226 6.37429 6.63045 6.66589 6.70407 6.83600 6.95972 7.25004 7.28087 7.44037 7.49259 8.12960 8.49404 8.73686 8.89321 9.38221 10.89546 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035106 B = 0.004747 C = 0.004386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.384346 B = 5897.477230 C = 6381.770152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.693 5.693 14 C 0.545 3.455 15 O -0.546 6.546 16 C -0.128 4.128 17 C -0.077 4.077 18 C -0.148 4.148 19 C 0.117 3.883 20 O -0.497 6.497 21 C -0.123 4.123 22 C -0.110 4.110 23 C -0.050 4.050 24 H 0.032 0.968 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.267 0.733 30 H 0.394 0.606 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.390 0.610 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.787 7.268 -12.185 18.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.069 0.931 5 C -0.574 4.574 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.529 5.529 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.341 5.341 14 C 0.331 3.669 15 O -0.426 6.426 16 C -0.131 4.131 17 C -0.095 4.095 18 C -0.167 4.167 19 C 0.073 3.927 20 O -0.307 6.307 21 C -0.123 4.123 22 C -0.167 4.167 23 C -0.069 4.069 24 H 0.051 0.949 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.228 0.772 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.352 6.616 -11.531 18.146 hybrid contribution 0.251 -0.069 0.431 0.503 sum -12.100 6.547 -11.100 17.677 Atomic orbital electron populations 1.21880 0.96922 0.99092 1.02286 1.22284 0.94399 0.99859 1.01162 1.19192 0.95703 0.88566 0.82696 0.93141 1.21040 0.88537 1.39910 1.07921 0.90195 1.24823 0.94865 0.95091 0.97655 1.69864 1.08691 1.44471 1.29824 0.86904 0.80984 0.79987 0.80877 1.20200 1.22145 1.18425 1.46129 1.14721 1.55245 1.18047 1.18104 0.82766 0.79170 0.86901 1.90740 1.51512 1.60429 1.39958 1.20278 0.95600 1.02030 0.95173 1.21291 0.99237 0.97055 0.91953 1.21314 0.95879 1.01110 0.98392 1.18478 0.92157 0.97016 0.85092 1.84726 1.83532 1.27622 1.34815 1.20154 0.97594 1.01571 0.93023 1.20678 0.92704 1.00183 1.03129 1.21077 0.95322 0.93825 0.96684 0.94919 0.92832 0.92931 0.92250 0.92707 0.92259 0.77151 0.84800 0.84930 0.75421 0.91301 0.90925 0.91258 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.52 37.16 0.32 -2.62 16 2 C -0.14 -3.08 5.11 -26.73 -0.14 -3.22 16 3 C 0.24 5.72 1.83 -69.08 -0.13 5.59 16 4 H 0.05 1.32 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.37 9.31 -34.44 -0.32 -14.69 16 6 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 7 C 0.08 2.21 5.45 -17.82 -0.10 2.12 16 8 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 9 Si 0.88 21.66 24.41 -169.99 -4.15 17.51 16 10 H -0.28 -6.55 6.83 56.52 0.39 -6.16 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 13 N -0.69 -13.79 4.97 -55.95 -0.28 -14.07 16 14 C 0.54 10.44 6.34 -12.44 -0.08 10.36 16 15 O -0.55 -12.00 13.49 5.29 0.07 -11.93 16 16 C -0.13 -1.97 5.87 -104.96 -0.62 -2.59 16 17 C -0.08 -1.00 9.53 -39.22 -0.37 -1.37 16 18 C -0.15 -1.69 9.97 -39.49 -0.39 -2.08 16 19 C 0.12 1.32 6.68 -39.02 -0.26 1.06 16 20 O -0.50 -4.59 12.52 -18.83 -0.24 -4.82 16 21 C -0.12 -1.45 5.89 -104.54 -0.62 -2.07 16 22 C -0.11 -1.00 9.78 36.00 0.35 -0.65 16 23 C -0.05 -0.70 9.23 -39.22 -0.36 -1.06 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 1.14 7.85 -51.93 -0.41 0.74 16 26 H 0.05 1.06 5.66 -51.93 -0.29 0.76 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 28 H 0.05 1.28 3.21 -51.93 -0.17 1.11 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.39 6.90 6.56 -40.82 -0.27 6.63 16 31 H 0.13 1.57 6.40 -52.49 -0.34 1.23 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.39 1.76 9.06 45.56 0.41 2.17 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.62 7.52 -51.93 -0.39 0.23 16 36 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 37 H 0.14 1.96 7.64 -52.48 -0.40 1.55 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -32.09 300.72 -5.91 -37.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.91 Total: 7.48 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.71 Total: -11.22 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.50 Total: -39.55 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.16 Total: -16.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.15 Total: 17.51 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.09 -5.91 -37.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231034712.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.771 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds