Wall clock time and date at job start Mon Mar 30 2020 00:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99735 * 2 1 4 4 C 1.38753 * 120.05947 * 0.24573 * 3 2 1 5 5 C 1.38121 * 119.93984 * 180.32322 * 4 3 2 6 6 C 1.38284 * 120.06327 * 359.68103 * 5 4 3 7 7 C 1.38248 * 120.10583 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05875 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.02745 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.46915 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47535 * 300.00246 * 9 8 7 12 12 C 1.53004 * 109.47117 * 60.00085 * 9 8 7 13 13 C 1.50700 * 109.47208 * 174.99635 * 12 9 8 14 14 O 1.21293 * 119.99810 * 359.97438 * 13 12 9 15 15 N 1.34777 * 119.99675 * 180.27843 * 13 12 9 16 16 C 1.37102 * 119.99634 * 179.72687 * 15 13 12 17 17 H 1.08002 * 119.99868 * 359.97438 * 16 15 13 18 18 C 1.38945 * 119.99860 * 179.97438 * 16 15 13 19 19 N 1.31414 * 119.99894 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99956 * 179.97438 * 18 16 15 21 21 H 1.48494 * 109.47230 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.46892 * 120.00602 * 20 18 16 23 23 H 1.48503 * 109.46797 * 240.00208 * 20 18 16 24 24 H 1.09000 * 109.47204 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47163 * 300.00447 * 1 2 3 26 26 H 1.08993 * 109.47180 * 60.00452 * 1 2 3 27 27 H 1.07999 * 120.02637 * 0.02995 * 4 3 2 28 28 H 1.08007 * 119.96663 * 179.70570 * 5 4 3 29 29 H 1.07995 * 119.94577 * 180.02562 * 6 5 4 30 30 H 1.08007 * 119.96924 * 179.97438 * 7 6 5 31 31 H 1.09004 * 109.46667 * 299.99719 * 11 9 8 32 32 H 1.09000 * 109.47161 * 59.99977 * 11 9 8 33 33 H 1.09003 * 109.47289 * 180.02562 * 11 9 8 34 34 H 1.09009 * 109.46730 * 54.99541 * 12 9 8 35 35 H 1.08998 * 109.46846 * 295.00086 * 12 9 8 36 36 H 0.97001 * 120.00485 * 359.71840 * 15 13 12 37 37 H 0.97004 * 119.99542 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0052 5 6 1.9209 3.6047 -0.0016 6 6 3.3019 3.6758 -0.0068 7 6 4.0559 2.5171 -0.0059 8 6 3.4311 1.2848 -0.0002 9 6 4.2537 0.0222 0.0003 10 1 3.5910 -0.8432 0.0047 11 6 5.1319 -0.0150 -1.2520 12 6 5.1410 -0.0080 1.2465 13 6 5.8719 -1.3243 1.3110 14 8 5.6997 -2.1566 0.4457 15 7 6.7122 -1.5790 2.3335 16 6 7.3729 -2.7787 2.3951 17 1 7.2197 -3.5198 1.6246 18 6 8.2396 -3.0412 3.4489 19 7 8.4257 -2.1396 4.3868 20 14 9.1393 -4.6761 3.5334 21 1 8.7590 -5.5112 2.3658 22 1 10.6046 -4.4363 3.5137 23 1 8.7698 -5.3802 4.7876 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2128 2.3204 0.0097 28 1 1.3340 4.5114 -0.0024 29 1 3.7922 4.6381 -0.0117 30 1 5.1344 2.5752 -0.0104 31 1 4.4998 0.0065 -2.1397 32 1 5.7947 0.8504 -1.2568 33 1 5.7266 -0.9285 -1.2518 34 1 4.5218 0.1079 2.1362 35 1 5.8633 0.8068 1.1979 36 1 6.8497 -0.9135 3.0257 37 1 9.0305 -2.3230 5.1227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264204068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:32 Heat of formation + Delta-G solvation = -64.103834 kcal Electronic energy + Delta-G solvation = -19468.953841 eV Core-core repulsion = 16404.093367 eV Total energy + Delta-G solvation = -3064.860473 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.29929 -38.35365 -37.36106 -34.82950 -33.65446 -31.17677 -30.10155 -29.73910 -27.44851 -27.17351 -24.62757 -23.27501 -22.01792 -20.26383 -18.79762 -17.99439 -17.72030 -16.44407 -15.81873 -15.70939 -15.23273 -14.54949 -14.43791 -14.29336 -13.89169 -13.66799 -13.32671 -13.00034 -12.65048 -12.22402 -12.10417 -11.85386 -11.68284 -11.45872 -11.30225 -11.11638 -11.01214 -10.62532 -10.38207 -10.30406 -10.19803 -10.13787 -9.43568 -8.78295 -8.24590 -8.04834 -7.89588 -6.36416 -3.76853 1.37324 1.49520 3.19719 3.29802 3.32151 3.37334 3.80674 3.99807 4.22359 4.71991 4.81315 4.99543 5.06202 5.07298 5.18857 5.30781 5.39057 5.40820 5.47735 5.59930 5.69807 5.72829 5.87728 6.16794 6.20299 6.22632 6.36675 6.38778 6.45995 6.56101 6.64215 6.85340 6.95007 6.99908 7.45625 7.60542 8.12570 8.67814 9.23702 9.62047 10.13812 10.81553 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030613 B = 0.004198 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.418845 B = 6667.783229 C = 6977.426989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.127 3.873 4 C -0.210 4.210 5 C -0.093 4.093 6 C -0.157 4.157 7 C -0.078 4.078 8 C -0.096 4.096 9 C -0.027 4.027 10 H 0.091 0.909 11 C -0.143 4.143 12 C -0.122 4.122 13 C 0.444 3.556 14 O -0.591 6.591 15 N -0.565 5.565 16 C -0.298 4.298 17 H 0.103 0.897 18 C 0.021 3.979 19 N -0.903 5.903 20 Si 0.928 3.072 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.099 0.901 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.124 0.876 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.392 0.608 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.997 11.359 -6.611 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.222 6.222 3 C 0.082 3.918 4 C -0.229 4.229 5 C -0.111 4.111 6 C -0.175 4.175 7 C -0.096 4.096 8 C -0.097 4.097 9 C -0.045 4.045 10 H 0.110 0.890 11 C -0.200 4.200 12 C -0.162 4.162 13 C 0.230 3.770 14 O -0.477 6.477 15 N -0.201 5.201 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.180 4.180 19 N -0.544 5.544 20 Si 0.755 3.245 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.117 0.883 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.147 0.853 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.226 0.774 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.905 10.582 -7.017 18.104 hybrid contribution 0.238 -0.073 0.688 0.731 sum -12.667 10.509 -6.329 17.634 Atomic orbital electron populations 1.23031 0.78911 1.03871 1.00915 1.86159 1.20826 1.26681 1.88521 1.18896 0.91941 0.84176 0.96806 1.21167 0.99698 0.92448 1.09557 1.20843 0.94699 0.96686 0.98847 1.21022 0.93867 0.98296 1.04328 1.20936 1.00178 0.91003 0.97529 1.19510 0.90406 0.96342 1.03426 1.19675 0.95758 0.94113 0.94992 0.89037 1.21927 0.99232 1.03211 0.95650 1.21558 0.98704 0.97455 0.98510 1.19926 0.83746 0.89117 0.84169 1.90472 1.67846 1.48958 1.40424 1.41938 1.38676 1.17137 1.22368 1.19774 1.20484 0.93774 1.08759 0.87891 1.25255 0.97940 0.99292 0.95536 1.69630 1.37749 1.34642 1.12400 0.85820 0.78830 0.81540 0.78276 1.19242 1.20804 1.20808 0.88302 0.92874 0.92958 0.85830 0.86258 0.86143 0.85278 0.93804 0.93767 0.89511 0.90660 0.90600 0.77446 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.31 -4.48 9.26 -19.43 -0.18 -4.66 16 3 C 0.13 1.83 6.66 -39.22 -0.26 1.57 16 4 C -0.21 -2.48 9.04 -39.43 -0.36 -2.84 16 5 C -0.09 -1.01 10.04 -39.61 -0.40 -1.41 16 6 C -0.16 -1.79 10.04 -39.56 -0.40 -2.19 16 7 C -0.08 -1.04 8.76 -39.60 -0.35 -1.38 16 8 C -0.10 -1.46 4.79 -104.47 -0.50 -1.96 16 9 C -0.03 -0.47 2.17 -91.77 -0.20 -0.67 16 10 H 0.09 1.82 6.81 -51.93 -0.35 1.47 16 11 C -0.14 -2.46 8.75 37.16 0.33 -2.14 16 12 C -0.12 -2.28 4.91 -27.88 -0.14 -2.42 16 13 C 0.44 10.73 7.50 -10.98 -0.08 10.64 16 14 O -0.59 -16.02 13.54 5.55 0.08 -15.95 16 15 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 16 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 17 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 18 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 19 N -0.90 -25.04 13.05 55.50 0.72 -24.31 16 20 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.44 7.65 -51.92 -0.40 0.04 16 26 H 0.05 0.42 7.67 -51.93 -0.40 0.02 16 27 H 0.12 1.16 6.30 -52.49 -0.33 0.83 16 28 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 29 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.13 1.57 7.16 -52.48 -0.38 1.19 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.67 7.39 -51.93 -0.38 0.29 16 33 H 0.09 1.76 5.95 -51.93 -0.31 1.45 16 34 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 35 H 0.08 1.27 7.57 -51.93 -0.39 0.88 16 36 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -31.94 310.09 -6.28 -38.22 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -4.89 Total: 10.15 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -1.60 Total: -9.66 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.67 Total: -39.10 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.10 Total: -20.61 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.94 -6.28 -38.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264204068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.887 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds