Wall clock time and date at job start Mon Mar 30 2020 00:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47442 * 2 1 4 4 N 1.46503 * 109.47113 * 179.97438 * 3 2 1 5 5 C 1.37095 * 119.99892 * 264.74389 * 4 3 2 6 6 H 1.08004 * 119.99773 * 146.16587 * 5 4 3 7 7 C 1.38944 * 120.00054 * 326.16800 * 5 4 3 8 8 N 1.31408 * 120.00234 * 337.68287 * 7 5 4 9 9 Si 1.86808 * 120.00099 * 157.68588 * 7 5 4 10 10 H 1.48502 * 109.46914 * 59.99409 * 9 7 5 11 11 H 1.48498 * 109.46897 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46548 * 299.99925 * 9 7 5 13 13 C 1.34776 * 119.99686 * 84.74689 * 4 3 2 14 14 O 1.21293 * 119.99541 * 180.02562 * 13 4 3 15 15 C 1.50701 * 120.00693 * 359.97438 * 13 4 3 16 16 C 1.50696 * 109.47488 * 180.02562 * 15 13 4 17 17 C 1.38268 * 119.94277 * 89.99968 * 16 15 13 18 18 C 1.38144 * 120.05541 * 179.97438 * 17 16 15 19 19 C 1.38731 * 119.94448 * 0.02562 * 18 17 16 20 20 O 1.35905 * 120.05817 * 180.02562 * 19 18 17 21 21 C 1.38739 * 119.88925 * 0.27508 * 19 18 17 22 22 C 1.38148 * 119.93999 * 359.46876 * 21 19 18 23 23 H 1.09001 * 109.47613 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47408 * 300.00932 * 1 2 3 25 25 H 1.09006 * 109.46589 * 60.00460 * 1 2 3 26 26 H 1.09000 * 109.47408 * 239.99068 * 2 1 3 27 27 H 1.09006 * 109.46589 * 119.99540 * 2 1 3 28 28 H 1.08994 * 109.47191 * 59.99269 * 3 2 1 29 29 H 1.09006 * 109.46853 * 299.99378 * 3 2 1 30 30 H 0.97000 * 120.00470 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.46666 * 59.99546 * 15 13 4 32 32 H 1.09005 * 109.47012 * 300.00470 * 15 13 4 33 33 H 1.08005 * 119.97367 * 0.02562 * 17 16 15 34 34 H 1.07999 * 120.02795 * 179.97438 * 18 17 16 35 35 H 0.96696 * 113.99767 * 90.00241 * 20 19 18 36 36 H 1.07993 * 120.02855 * 179.71888 * 21 19 18 37 37 H 1.08001 * 119.97233 * 180.22748 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5513 1.1832 6 1 5.1328 1.0399 1.3102 7 6 3.6714 2.3195 2.2183 8 7 2.8003 3.2687 1.9594 9 14 4.2124 2.0031 3.9781 10 1 5.6805 2.1981 4.0872 11 1 3.5186 2.9504 4.8871 12 1 3.8686 0.6094 4.3585 13 6 4.1794 1.3353 -1.1614 14 8 5.3923 1.3348 -1.1608 15 6 3.4265 1.2151 -2.4613 16 6 4.4063 1.1095 -3.6015 17 6 4.8548 -0.1319 -4.0132 18 6 5.7526 -0.2315 -5.0584 19 6 6.2044 0.9155 -5.6948 20 8 7.0872 0.8202 -6.7237 21 6 5.7576 2.1603 -5.2757 22 6 4.8558 2.2541 -4.2334 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.6767 1.9563 0.8899 29 1 1.6768 1.9563 -0.8901 30 1 2.4385 3.8052 2.6819 31 1 2.7996 2.0958 -2.6008 32 1 2.8001 0.3233 -2.4372 33 1 4.5025 -1.0246 -3.5177 34 1 6.1030 -1.2013 -5.3794 35 1 6.6710 0.7402 -7.5928 36 1 6.1114 3.0548 -5.7665 37 1 4.5048 3.2227 -3.9092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268335075.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:12 Heat of formation + Delta-G solvation = -58.024421 kcal Electronic energy + Delta-G solvation = -19667.584105 eV Core-core repulsion = 16602.987254 eV Total energy + Delta-G solvation = -3064.596850 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.64622 -38.48081 -36.61048 -35.17246 -32.85965 -31.50108 -31.05448 -30.73044 -26.98844 -25.66464 -24.18665 -22.54984 -21.54118 -20.92175 -18.84369 -18.25045 -16.85239 -16.02435 -15.62648 -15.59715 -14.95038 -14.79011 -14.25420 -13.87879 -13.77937 -13.40014 -13.19443 -12.95735 -12.54089 -12.03302 -11.75373 -11.67358 -11.44203 -11.41202 -11.21615 -11.05263 -10.90479 -10.60383 -10.35965 -10.27613 -10.20330 -9.92798 -8.92333 -8.70565 -8.50737 -8.07525 -7.46785 -6.32077 -3.92657 1.49822 1.63821 3.19929 3.25877 3.29848 3.85832 3.93378 4.18448 4.35018 4.88735 5.02856 5.11853 5.19118 5.24729 5.54178 5.61374 5.66647 5.73229 5.75811 5.95850 5.96976 6.07066 6.13075 6.26914 6.29638 6.37961 6.47232 6.56185 6.60053 6.63953 6.91606 6.95683 7.07392 7.29045 7.60993 7.76750 8.25981 8.53244 9.21192 9.43612 10.04126 10.71531 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024442 B = 0.005126 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.287990 B = 5461.420508 C = 6096.502822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.442 5.442 5 C -0.306 4.306 6 H 0.091 0.909 7 C 0.036 3.964 8 N -0.870 5.870 9 Si 0.916 3.084 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.460 3.540 14 O -0.575 6.575 15 C -0.102 4.102 16 C -0.049 4.049 17 C -0.093 4.093 18 C -0.144 4.144 19 C 0.087 3.913 20 O -0.501 6.501 21 C -0.143 4.143 22 C -0.091 4.091 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.047 0.953 30 H 0.268 0.732 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.382 0.618 36 H 0.124 0.876 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.309 -4.526 -11.394 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C -0.024 4.024 4 N -0.161 5.161 5 C -0.434 4.434 6 H 0.109 0.891 7 C -0.168 4.168 8 N -0.509 5.509 9 Si 0.743 3.257 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.248 3.752 14 O -0.458 6.458 15 C -0.142 4.142 16 C -0.049 4.049 17 C -0.111 4.111 18 C -0.163 4.163 19 C 0.043 3.957 20 O -0.311 6.311 21 C -0.162 4.162 22 C -0.110 4.110 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.132 0.868 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.237 0.763 36 H 0.142 0.858 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.383 -4.325 -10.805 12.120 hybrid contribution -0.214 -0.071 0.542 0.587 sum -3.596 -4.396 -10.263 11.730 Atomic orbital electron populations 1.21678 0.96341 1.00658 1.01582 1.21985 0.94888 0.99405 1.01644 1.21681 0.82091 0.94444 1.04183 1.43509 1.04557 1.63216 1.04817 1.19413 1.06795 1.28402 0.88810 0.89135 1.25298 0.97346 0.93701 1.00432 1.69908 1.31074 1.16917 1.32954 0.86161 0.79141 0.78257 0.82165 1.19772 1.20989 1.19926 1.20138 0.88069 0.82639 0.84395 1.90553 1.13968 1.54542 1.86689 1.20761 0.97245 1.03646 0.92583 1.19533 0.97332 0.93100 0.94952 1.20853 0.96915 0.97374 0.95985 1.21276 0.98520 0.97982 0.98492 1.18406 0.92782 0.92507 0.92039 1.84849 1.33494 1.95938 1.16770 1.21294 0.98386 0.97007 0.99469 1.20899 0.96669 0.98378 0.95007 0.93480 0.92725 0.93155 0.93255 0.91731 0.86792 0.93479 0.92225 0.89224 0.89441 0.85963 0.85892 0.76295 0.85840 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.14 -2.47 6.17 -26.73 -0.16 -2.63 16 3 C 0.10 2.12 4.72 -4.04 -0.02 2.10 16 4 N -0.44 -11.06 2.56 -114.81 -0.29 -11.36 16 5 C -0.31 -8.49 8.98 -14.94 -0.13 -8.62 16 6 H 0.09 2.65 7.70 -52.48 -0.40 2.25 16 7 C 0.04 0.95 4.92 -17.47 -0.09 0.86 16 8 N -0.87 -23.18 11.33 55.50 0.63 -22.55 16 9 Si 0.92 20.59 29.61 -169.99 -5.03 15.56 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 C 0.46 11.17 7.59 -10.99 -0.08 11.09 16 14 O -0.57 -16.28 15.86 5.55 0.09 -16.19 16 15 C -0.10 -1.87 4.43 -29.04 -0.13 -2.00 16 16 C -0.05 -0.86 4.37 -104.60 -0.46 -1.32 16 17 C -0.09 -1.51 9.69 -39.60 -0.38 -1.90 16 18 C -0.14 -2.15 9.99 -39.43 -0.39 -2.54 16 19 C 0.09 1.29 6.71 -39.21 -0.26 1.02 16 20 O -0.50 -6.38 13.50 -19.44 -0.26 -6.64 16 21 C -0.14 -2.17 9.99 -39.43 -0.39 -2.56 16 22 C -0.09 -1.53 9.69 -39.60 -0.38 -1.91 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.81 6.59 -51.93 -0.34 0.47 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.11 2.68 5.34 -51.93 -0.28 2.41 16 29 H 0.05 0.90 6.66 -51.93 -0.35 0.56 16 30 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.09 1.51 7.36 -51.93 -0.38 1.12 16 32 H 0.09 1.40 6.48 -51.93 -0.34 1.06 16 33 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.38 2.74 9.06 45.56 0.41 3.15 16 36 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.12 1.95 8.06 -52.49 -0.42 1.52 16 LS Contribution 313.63 15.07 4.73 4.73 Total: -1.00 -32.80 313.63 -6.86 -39.66 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.19 Total: 6.88 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.52 Total: -10.08 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.34 Total: -33.91 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.17 Total: -22.84 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.80 -6.86 -39.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268335075.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.366 kcal (2) G-P(sol) polarization free energy of solvation -32.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds