Wall clock time and date at job start Mon Mar 30 2020 00:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.52995 * 109.47038 * 119.99997 * 2 1 3 5 5 C 1.52997 * 109.47111 * 185.00277 * 4 2 1 6 6 O 1.42894 * 109.47289 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.47147 * 240.00199 * 2 1 3 8 8 C 1.34780 * 120.00205 * 85.00197 * 7 2 1 9 9 O 1.21588 * 119.99887 * 359.97438 * 8 7 2 10 10 C 1.47641 * 120.00320 * 180.02562 * 8 7 2 11 11 C 1.40010 * 119.89797 * 179.97438 * 10 8 7 12 12 C 1.36311 * 120.10619 * 180.22650 * 11 10 8 13 13 C 1.40890 * 119.89268 * 359.52335 * 12 11 10 14 14 C 1.41106 * 120.10094 * 180.22849 * 13 12 11 15 15 H 1.08008 * 119.99856 * 204.78436 * 14 13 12 16 16 C 1.40225 * 120.00429 * 24.77851 * 14 13 12 17 17 N 1.30645 * 119.99670 * 17.75194 * 16 14 13 18 18 Si 1.86801 * 120.00217 * 197.75022 * 16 14 13 19 19 H 1.48500 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47119 * 120.00318 * 18 16 14 21 21 H 1.48503 * 109.47053 * 239.99919 * 18 16 14 22 22 C 1.40880 * 119.79000 * 0.47581 * 13 12 11 23 23 C 1.36318 * 119.89386 * 359.75338 * 22 13 12 24 24 H 1.08998 * 109.46977 * 59.99843 * 1 2 3 25 25 H 1.08993 * 109.46914 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47187 * 300.00097 * 1 2 3 27 27 H 1.08998 * 109.47020 * 305.00254 * 4 2 1 28 28 H 1.08996 * 109.47086 * 65.00241 * 4 2 1 29 29 H 1.09007 * 109.47057 * 300.00184 * 5 4 2 30 30 H 1.09000 * 109.47668 * 60.00070 * 5 4 2 31 31 H 0.96706 * 114.00674 * 179.97438 * 6 5 4 32 32 H 0.96997 * 120.00284 * 264.99489 * 7 2 1 33 33 H 1.08008 * 119.94228 * 359.95103 * 11 10 8 34 34 H 1.08000 * 120.05264 * 179.74278 * 12 11 10 35 35 H 0.97006 * 119.99884 * 179.97438 * 17 16 14 36 36 H 1.08006 * 120.05426 * 179.73650 * 22 13 12 37 37 H 1.08001 * 119.94209 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 8 4.0412 -1.2873 2.4801 7 7 2.0184 -0.6905 -1.1962 8 6 2.1472 -0.0182 -2.3571 9 8 1.8576 1.1615 -2.4118 10 6 2.6388 -0.7142 -3.5628 11 6 2.7712 -0.0137 -4.7678 12 6 3.2203 -0.6533 -5.8847 13 6 3.5609 -2.0190 -5.8226 14 6 4.0309 -2.6842 -6.9749 15 1 3.9159 -3.7543 -7.0653 16 6 4.6469 -1.9560 -8.0028 17 7 5.0995 -0.7527 -7.7701 18 14 4.8206 -2.7063 -9.7046 19 1 4.2320 -4.0697 -9.7068 20 1 4.1096 -1.8579 -10.6946 21 1 6.2589 -2.7880 -10.0652 22 6 3.4260 -2.7195 -4.6078 23 6 2.9716 -2.0726 -3.4973 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6053 -0.2617 2.1369 28 1 1.7517 -1.7715 1.2055 29 1 3.9995 -1.0727 0.4259 30 1 3.8532 0.4370 1.3574 31 1 5.0021 -1.2598 2.5856 32 1 2.2491 -1.6317 -1.1527 33 1 2.5128 1.0340 -4.8135 34 1 3.3181 -0.1131 -6.8148 35 1 5.5260 -0.2490 -8.4810 36 1 3.6819 -3.7676 -4.5565 37 1 2.8682 -2.6088 -2.5655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270398257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:39 Heat of formation + Delta-G solvation = -89.426499 kcal Electronic energy + Delta-G solvation = -19165.730014 eV Core-core repulsion = 16099.771468 eV Total energy + Delta-G solvation = -3065.958547 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.36387 -37.56387 -36.92399 -35.31118 -33.90281 -31.59521 -30.01302 -29.42448 -28.81956 -25.90868 -23.42156 -22.18772 -21.21253 -20.41489 -19.69774 -17.60874 -17.50012 -16.70262 -16.02506 -15.37682 -14.87416 -14.62160 -14.15268 -13.98784 -13.71273 -13.37795 -13.03304 -12.77526 -12.35692 -12.22861 -12.01661 -11.90404 -11.75459 -11.39270 -11.24754 -11.12714 -10.99557 -10.83494 -10.64420 -10.07356 -10.05003 -9.55656 -9.34745 -8.97469 -8.63511 -7.71219 -7.57955 -7.03250 -4.61374 2.22439 2.89543 2.95075 3.00398 3.02094 3.73571 3.76069 3.86638 4.02260 4.55916 4.92667 4.95388 5.13528 5.41037 5.47011 5.52914 5.58992 5.72790 5.82176 5.87125 5.96317 5.98025 6.23115 6.28991 6.33798 6.79320 6.82861 6.97780 7.05708 7.09892 7.42773 7.47905 7.60572 7.77692 7.86991 8.04352 8.24533 8.42260 8.62077 8.74482 9.07390 9.88689 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.003962 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.108525 B = 7065.627614 C = 7437.034321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.073 3.927 6 O -0.579 6.579 7 N -0.740 5.740 8 C 0.572 3.428 9 O -0.573 6.573 10 C -0.284 4.284 11 C -0.036 4.036 12 C -0.183 4.183 13 C 0.128 3.872 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.769 5.769 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.235 4.235 23 C -0.049 4.049 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.379 0.621 32 H 0.395 0.605 33 H 0.100 0.900 34 H 0.120 0.880 35 H 0.287 0.713 36 H 0.097 0.903 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.905 -1.579 10.073 10.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.004 4.004 6 O -0.384 6.384 7 N -0.393 5.393 8 C 0.367 3.633 9 O -0.455 6.455 10 C -0.289 4.289 11 C -0.055 4.055 12 C -0.202 4.202 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.148 4.148 17 N -0.392 5.392 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.197 1.197 22 C -0.255 4.255 23 C -0.068 4.068 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.226 0.774 32 H 0.231 0.769 33 H 0.118 0.882 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.115 0.885 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.618 -0.644 10.014 10.371 hybrid contribution 0.929 -0.619 -0.822 1.387 sum -1.689 -1.264 9.192 9.431 Atomic orbital electron populations 1.22153 0.95370 1.02014 1.02355 1.20725 0.94018 0.97463 0.83718 0.89658 1.21805 0.94337 1.02086 0.98053 1.22216 0.94979 0.95850 0.87396 1.86425 1.27248 1.78883 1.45864 1.46061 1.69745 1.13919 1.09574 1.18602 0.75839 0.86041 0.82847 1.90634 1.52907 1.16495 1.85434 1.18921 1.21335 0.94742 0.93885 1.20481 0.95332 0.97864 0.91860 1.21015 1.05341 0.95923 0.97908 1.17787 0.86241 0.92055 0.91448 1.19872 1.31223 0.95921 1.00058 0.89712 1.26107 0.92934 0.94462 1.01261 1.69757 1.24227 1.10588 1.34646 0.86177 0.78904 0.80629 0.80664 1.18074 1.19343 1.19669 1.20668 1.12201 0.99315 0.93296 1.20357 0.96706 0.93116 0.96661 0.91706 0.92581 0.92131 0.90069 0.90782 0.92987 0.93568 0.77396 0.76938 0.88203 0.86182 0.90207 0.88517 0.89332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.48 37.16 0.35 -1.66 16 2 C 0.15 1.98 2.57 -67.93 -0.17 1.80 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 4 C -0.12 -1.39 5.12 -26.74 -0.14 -1.53 16 5 C 0.07 0.83 6.93 37.16 0.26 1.09 16 6 O -0.58 -6.37 13.66 -35.23 -0.48 -6.85 16 7 N -0.74 -11.82 4.48 -54.81 -0.25 -12.06 16 8 C 0.57 11.91 7.73 -12.42 -0.10 11.81 16 9 O -0.57 -13.51 15.99 5.29 0.08 -13.43 16 10 C -0.28 -6.43 5.89 -104.73 -0.62 -7.04 16 11 C -0.04 -0.88 9.52 -39.61 -0.38 -1.26 16 12 C -0.18 -4.65 8.63 -39.27 -0.34 -4.99 16 13 C 0.13 3.24 5.57 -106.81 -0.60 2.65 16 14 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 15 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 16 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 17 N -0.77 -18.73 10.95 55.56 0.61 -18.12 16 18 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 22 C -0.24 -5.40 9.73 -39.27 -0.38 -5.78 16 23 C -0.05 -1.04 9.47 -39.61 -0.38 -1.41 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.63 7.75 -51.93 -0.40 0.22 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.38 2.55 9.12 45.56 0.42 2.97 16 32 H 0.40 5.64 6.60 -40.82 -0.27 5.37 16 33 H 0.10 2.41 7.63 -52.48 -0.40 2.01 16 34 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 35 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 36 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 37 H 0.09 1.53 6.37 -52.49 -0.33 1.19 16 LS Contribution 315.17 15.07 4.75 4.75 Total: -1.00 -29.27 315.17 -7.45 -36.71 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -4.22 Total: 12.74 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.91 Total: -16.00 kcal Atomic # 7 Polarization: -30.55 SS G_CDS: 0.36 Total: -30.19 kcal Atomic # 8 Polarization: -19.88 SS G_CDS: -0.40 Total: -20.28 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.27 -7.45 -36.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270398257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.713 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds