Wall clock time and date at job start Mon Mar 30 2020 00:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46755 * 2 1 4 4 C 1.52995 * 109.47038 * 119.99997 * 2 1 3 5 5 C 1.52997 * 109.47111 * 185.00277 * 4 2 1 6 6 O 1.42894 * 109.47289 * 180.02562 * 5 4 2 7 7 N 1.46496 * 109.47147 * 240.00199 * 2 1 3 8 8 C 1.34780 * 120.00205 * 85.00197 * 7 2 1 9 9 O 1.21588 * 119.99887 * 359.97438 * 8 7 2 10 10 C 1.47641 * 120.00320 * 180.02562 * 8 7 2 11 11 C 1.40010 * 119.89797 * 179.97438 * 10 8 7 12 12 C 1.36311 * 120.10619 * 180.22650 * 11 10 8 13 13 C 1.40890 * 119.89268 * 359.52335 * 12 11 10 14 14 C 1.41106 * 120.10094 * 180.22849 * 13 12 11 15 15 H 1.08008 * 119.99856 * 204.78436 * 14 13 12 16 16 C 1.40225 * 120.00429 * 24.77851 * 14 13 12 17 17 N 1.30645 * 119.99670 * 17.75194 * 16 14 13 18 18 Si 1.86801 * 120.00217 * 197.75022 * 16 14 13 19 19 H 1.48500 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47119 * 120.00318 * 18 16 14 21 21 H 1.48503 * 109.47053 * 239.99919 * 18 16 14 22 22 C 1.40880 * 119.79000 * 0.47581 * 13 12 11 23 23 C 1.36318 * 119.89386 * 359.75338 * 22 13 12 24 24 H 1.08998 * 109.46977 * 59.99843 * 1 2 3 25 25 H 1.08993 * 109.46914 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47187 * 300.00097 * 1 2 3 27 27 H 1.08998 * 109.47020 * 305.00254 * 4 2 1 28 28 H 1.08996 * 109.47086 * 65.00241 * 4 2 1 29 29 H 1.09007 * 109.47057 * 300.00184 * 5 4 2 30 30 H 1.09000 * 109.47668 * 60.00070 * 5 4 2 31 31 H 0.96706 * 114.00674 * 179.97438 * 6 5 4 32 32 H 0.96997 * 120.00284 * 264.99489 * 7 2 1 33 33 H 1.08008 * 119.94228 * 359.95103 * 11 10 8 34 34 H 1.08000 * 120.05264 * 179.74278 * 12 11 10 35 35 H 0.97006 * 119.99884 * 179.97438 * 17 16 14 36 36 H 1.08006 * 120.05426 * 179.73650 * 22 13 12 37 37 H 1.08001 * 119.94209 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.6132 1.3137 6 8 4.0412 -1.2873 2.4801 7 7 2.0184 -0.6905 -1.1962 8 6 2.1472 -0.0182 -2.3571 9 8 1.8576 1.1615 -2.4118 10 6 2.6388 -0.7142 -3.5628 11 6 2.7712 -0.0137 -4.7678 12 6 3.2203 -0.6533 -5.8847 13 6 3.5609 -2.0190 -5.8226 14 6 4.0309 -2.6842 -6.9749 15 1 3.9159 -3.7543 -7.0653 16 6 4.6469 -1.9560 -8.0028 17 7 5.0995 -0.7527 -7.7701 18 14 4.8206 -2.7063 -9.7046 19 1 4.2320 -4.0697 -9.7068 20 1 4.1096 -1.8579 -10.6946 21 1 6.2589 -2.7880 -10.0652 22 6 3.4260 -2.7195 -4.6078 23 6 2.9716 -2.0726 -3.4973 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6053 -0.2617 2.1369 28 1 1.7517 -1.7715 1.2055 29 1 3.9995 -1.0727 0.4259 30 1 3.8532 0.4370 1.3574 31 1 5.0021 -1.2598 2.5856 32 1 2.2491 -1.6317 -1.1527 33 1 2.5128 1.0340 -4.8135 34 1 3.3181 -0.1131 -6.8148 35 1 5.5260 -0.2490 -8.4810 36 1 3.6819 -3.7676 -4.5565 37 1 2.8682 -2.6088 -2.5655 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270398257.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:39 Heat of formation + Delta-G solvation = -109.289475 kcal Electronic energy + Delta-G solvation = -19166.591338 eV Core-core repulsion = 16099.771468 eV Total energy + Delta-G solvation = -3066.819870 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92406 -39.10700 -38.13304 -36.53891 -35.69196 -33.02562 -31.79165 -31.09275 -29.86751 -27.67654 -24.57478 -23.69242 -22.87047 -21.76795 -21.30090 -19.36001 -18.69025 -18.07328 -17.27676 -17.07788 -15.98501 -15.88012 -15.74582 -15.50484 -15.10147 -15.03928 -14.44631 -14.17321 -13.98493 -13.75327 -13.37979 -13.20288 -12.90389 -12.87018 -12.77970 -12.62367 -12.36219 -12.04718 -11.91912 -11.74398 -11.35907 -11.12832 -10.92487 -10.67517 -10.05746 -9.56803 -9.41073 -8.79286 -6.48403 0.44936 1.15323 1.37725 1.41942 1.55240 2.12402 2.18019 2.39651 2.79775 3.18753 3.69724 3.97890 4.01131 4.18173 4.31291 4.36362 4.41200 4.45456 4.50614 4.60918 4.82279 4.88891 4.97344 5.01267 5.04228 5.14961 5.22360 5.26258 5.30294 5.58693 5.66649 5.79040 5.96815 6.02083 6.20566 6.56279 6.74815 6.76905 6.84136 6.89787 7.47855 8.16021 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032968 B = 0.003962 C = 0.003764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.108525 B = 7065.627614 C = 7437.034321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.144 3.856 3 H 0.068 0.932 4 C -0.115 4.115 5 C 0.073 3.927 6 O -0.589 6.589 7 N -0.719 5.719 8 C 0.573 3.427 9 O -0.606 6.606 10 C -0.293 4.293 11 C -0.051 4.051 12 C -0.203 4.203 13 C 0.100 3.900 14 C -0.473 4.473 15 H 0.092 0.908 16 C 0.034 3.966 17 N -0.804 5.804 18 Si 0.988 3.012 19 H -0.251 1.251 20 H -0.265 1.265 21 H -0.263 1.263 22 C -0.246 4.246 23 C -0.037 4.037 24 H 0.034 0.966 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.397 0.603 32 H 0.407 0.593 33 H 0.090 0.910 34 H 0.103 0.897 35 H 0.295 0.705 36 H 0.116 0.884 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 -3.284 11.448 12.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.005 4.005 6 O -0.397 6.397 7 N -0.372 5.372 8 C 0.366 3.634 9 O -0.491 6.491 10 C -0.298 4.298 11 C -0.070 4.070 12 C -0.222 4.222 13 C 0.097 3.903 14 C -0.500 4.500 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.428 5.428 18 Si 0.808 3.192 19 H -0.174 1.174 20 H -0.190 1.190 21 H -0.188 1.188 22 C -0.266 4.266 23 C -0.056 4.056 24 H 0.054 0.946 25 H 0.088 0.912 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.247 0.753 32 H 0.244 0.756 33 H 0.109 0.891 34 H 0.121 0.879 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.729 -2.376 11.444 12.002 hybrid contribution 0.964 -0.048 -1.105 1.467 sum -1.764 -2.424 10.339 10.765 Atomic orbital electron populations 1.22114 0.94280 1.02863 1.02216 1.20900 0.94846 0.96723 0.83541 0.91400 1.21715 0.94222 1.02390 0.96953 1.22162 0.95148 0.95814 0.87343 1.86376 1.29143 1.78756 1.45445 1.45891 1.68133 1.14282 1.08883 1.18379 0.75748 0.85569 0.83682 1.90619 1.54428 1.17927 1.86097 1.19211 1.20905 0.95660 0.94013 1.20553 0.95907 0.97705 0.92845 1.20933 1.07062 0.96579 0.97658 1.18149 0.86980 0.92179 0.92983 1.20180 1.32252 0.96507 1.01034 0.89022 1.27010 0.91891 0.94652 1.04888 1.69807 1.24745 1.11959 1.36255 0.85057 0.79138 0.79768 0.75243 1.17448 1.19009 1.18775 1.20944 1.12341 1.00275 0.93004 1.20688 0.94604 0.92357 0.97932 0.94632 0.91204 0.89528 0.88432 0.89747 0.93800 0.93663 0.75346 0.75581 0.89147 0.87919 0.89395 0.86642 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 9.48 71.98 0.68 -2.90 16 2 C 0.14 3.61 2.57 44.99 0.12 3.73 16 3 H 0.07 1.98 7.58 -2.39 -0.02 1.97 16 4 C -0.11 -2.20 5.12 30.59 0.16 -2.04 16 5 C 0.07 1.48 6.93 71.98 0.50 1.98 16 6 O -0.59 -11.30 13.66 -148.98 -2.03 -13.34 16 7 N -0.72 -21.60 4.48 -445.59 -2.00 -23.59 16 8 C 0.57 23.60 7.73 86.73 0.67 24.27 16 9 O -0.61 -28.99 15.99 -3.99 -0.06 -29.06 16 10 C -0.29 -13.25 5.89 -19.94 -0.12 -13.36 16 11 C -0.05 -2.57 9.52 22.25 0.21 -2.36 16 12 C -0.20 -10.79 8.63 22.47 0.19 -10.59 16 13 C 0.10 5.18 5.57 -21.28 -0.12 5.06 16 14 C -0.47 -23.70 9.04 23.46 0.21 -23.49 16 15 H 0.09 4.31 7.91 -2.91 -0.02 4.28 16 16 C 0.03 1.61 5.14 85.35 0.44 2.05 16 17 N -0.80 -40.20 10.95 21.87 0.24 -39.96 16 18 Si 0.99 35.27 29.60 68.60 2.03 37.30 16 19 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 20 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 22 C -0.25 -11.12 9.73 22.47 0.22 -10.90 16 23 C -0.04 -1.50 9.47 22.25 0.21 -1.29 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 0.95 7.75 -2.38 -0.02 0.93 16 30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.40 4.34 9.12 -74.05 -0.68 3.67 16 32 H 0.41 10.31 6.60 -92.71 -0.61 9.70 16 33 H 0.09 4.62 7.63 -2.91 -0.02 4.60 16 34 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 35 H 0.29 13.18 8.29 -92.70 -0.77 12.42 16 36 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 37 H 0.13 4.10 6.37 -2.91 -0.02 4.08 16 Total: -1.00 -64.75 315.17 1.36 -63.39 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: -0.19 Total: 35.09 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: 3.37 Total: -29.85 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -1.76 Total: -63.55 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -2.10 Total: -42.39 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -64.75 1.36 -63.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270398257.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.899 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds