Wall clock time and date at job start Mon Mar 30 2020 00:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47606 * 2 1 4 4 C 1.53008 * 109.47124 * 239.99677 * 2 1 3 5 5 C 1.52999 * 109.46932 * 175.00104 * 4 2 1 6 6 O 1.42900 * 109.46606 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.47156 * 120.00298 * 2 1 3 8 8 C 1.34777 * 119.99371 * 274.99969 * 7 2 1 9 9 O 1.21587 * 120.00484 * 359.97438 * 8 7 2 10 10 C 1.47647 * 119.99578 * 179.97438 * 8 7 2 11 11 C 1.40007 * 119.89735 * 359.72371 * 10 8 7 12 12 C 1.36315 * 120.10916 * 179.75894 * 11 10 8 13 13 C 1.40885 * 119.88881 * 0.51787 * 12 11 10 14 14 C 1.41113 * 120.10502 * 179.71850 * 13 12 11 15 15 H 1.07995 * 120.00047 * 155.08147 * 14 13 12 16 16 C 1.40223 * 119.99351 * 335.07935 * 14 13 12 17 17 N 1.30646 * 120.00581 * 342.20235 * 16 14 13 18 18 Si 1.86807 * 119.99617 * 162.20615 * 16 14 13 19 19 H 1.48507 * 109.46752 * 94.66047 * 18 16 14 20 20 H 1.48496 * 109.47078 * 214.65838 * 18 16 14 21 21 H 1.48492 * 109.47248 * 334.66234 * 18 16 14 22 22 C 1.40892 * 119.79581 * 359.73443 * 13 12 11 23 23 C 1.36316 * 119.88709 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47165 * 300.00082 * 1 2 3 25 25 H 1.09004 * 109.47648 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47004 * 59.99930 * 1 2 3 27 27 H 1.08997 * 109.46867 * 295.00503 * 4 2 1 28 28 H 1.09002 * 109.46771 * 55.00350 * 4 2 1 29 29 H 1.09000 * 109.47241 * 299.99617 * 5 4 2 30 30 H 1.09002 * 109.47192 * 60.00504 * 5 4 2 31 31 H 0.96706 * 113.99694 * 180.02562 * 6 5 4 32 32 H 0.96991 * 120.00470 * 94.99728 * 7 2 1 33 33 H 1.08007 * 119.94335 * 0.02562 * 11 10 8 34 34 H 1.07994 * 120.05523 * 180.22760 * 12 11 10 35 35 H 0.97003 * 119.99947 * 179.97438 * 17 16 14 36 36 H 1.07994 * 120.05897 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.94596 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 8 4.0410 -1.2866 -2.4807 7 7 2.0183 -0.6907 1.1962 8 6 2.1470 -0.0183 2.3571 9 8 1.8583 1.1616 2.4116 10 6 2.6386 -0.7144 3.5628 11 6 2.9650 -2.0744 3.4990 12 6 3.4239 -2.7203 4.6083 13 6 3.5593 -2.0196 5.8230 14 6 4.0283 -2.6851 6.9756 15 1 4.5087 -2.1254 7.7644 16 6 3.8704 -4.0731 7.0966 17 7 3.0068 -4.7006 6.3433 18 14 4.8948 -5.0252 8.3350 19 1 4.1288 -5.1774 9.5982 20 1 5.2149 -6.3670 7.7854 21 1 6.1549 -4.2879 8.6062 22 6 3.2246 -0.6523 5.8836 23 6 2.7711 -0.0139 4.7678 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.7515 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 3.8532 0.4369 -1.3574 30 1 3.9994 -1.0729 -0.4259 31 1 5.0019 -1.2590 -2.5861 32 1 2.2490 -1.6318 1.1527 33 1 2.8570 -2.6117 2.5683 34 1 3.6789 -3.7685 4.5572 35 1 2.8979 -5.6609 6.4268 36 1 3.3263 -0.1112 6.8126 37 1 2.5139 1.0340 4.8133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270398258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:41 Heat of formation + Delta-G solvation = -89.673197 kcal Electronic energy + Delta-G solvation = -19210.108421 eV Core-core repulsion = 16144.139176 eV Total energy + Delta-G solvation = -3065.969244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.35839 -37.56167 -36.92381 -35.30942 -33.88501 -31.66225 -29.89418 -29.45047 -28.84881 -25.91244 -23.42320 -22.19146 -21.11222 -20.52100 -19.67397 -17.59323 -17.50623 -16.62554 -16.08651 -15.41375 -14.85338 -14.61490 -14.13757 -13.98823 -13.71661 -13.37052 -13.01690 -12.82363 -12.34717 -12.10318 -12.00324 -11.99053 -11.73471 -11.39394 -11.27049 -11.10501 -10.99082 -10.84940 -10.64665 -10.07882 -10.06049 -9.57832 -9.36423 -8.96511 -8.62399 -7.73932 -7.55986 -7.05388 -4.62031 2.21825 2.89109 2.93406 2.99592 3.01823 3.72432 3.77450 3.85743 4.03128 4.54834 4.93663 4.96553 5.14527 5.41381 5.48215 5.53138 5.59112 5.74288 5.83829 5.88598 5.97545 6.03673 6.25675 6.30212 6.35363 6.75193 6.81031 6.94750 7.06025 7.11789 7.41856 7.48532 7.63817 7.77482 7.84271 8.05480 8.23687 8.38099 8.61370 8.73509 9.07330 9.86766 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.004289 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.394183 B = 6526.197785 C = 7100.371318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.074 3.926 6 O -0.578 6.578 7 N -0.739 5.739 8 C 0.573 3.427 9 O -0.576 6.576 10 C -0.285 4.285 11 C -0.062 4.062 12 C -0.179 4.179 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.075 3.925 17 N -0.772 5.772 18 Si 0.912 3.088 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.239 4.239 23 C -0.022 4.022 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.379 0.621 32 H 0.396 0.604 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.855 0.844 -9.798 9.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.041 3.959 3 H 0.103 0.897 4 C -0.163 4.163 5 C -0.004 4.004 6 O -0.384 6.384 7 N -0.392 5.392 8 C 0.367 3.633 9 O -0.458 6.458 10 C -0.290 4.290 11 C -0.082 4.082 12 C -0.198 4.198 13 C 0.126 3.874 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.146 4.146 17 N -0.395 5.395 18 Si 0.736 3.264 19 H -0.192 1.192 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.258 4.258 23 C -0.041 4.041 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.226 0.774 32 H 0.232 0.768 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.110 1.332 -9.894 9.984 hybrid contribution 0.989 -0.948 0.620 1.504 sum 0.878 0.384 -9.274 9.323 Atomic orbital electron populations 1.22155 0.95364 1.02081 1.02327 1.20723 0.94038 0.97401 0.83725 0.89678 1.21812 0.94328 1.02152 0.98043 1.22215 0.95001 0.95799 0.87397 1.86433 1.27212 1.78952 1.45787 1.46057 1.69620 1.13980 1.09552 1.18589 0.75751 0.86006 0.82910 1.90627 1.53093 1.16535 1.85507 1.18914 1.21550 0.94849 0.93680 1.20467 0.97788 0.92811 0.97089 1.20969 1.06589 1.00378 0.91844 1.17787 0.85979 0.91100 0.92580 1.19850 1.31896 0.92032 1.03301 0.89712 1.26096 0.93721 0.98329 0.96490 1.69744 1.24997 1.11282 1.33485 0.86219 0.80999 0.78919 0.80293 1.19219 1.19726 1.18075 1.20719 1.11562 0.96256 0.97309 1.20365 0.94440 0.97674 0.91648 0.91707 0.92532 0.92142 0.90737 0.90067 0.93607 0.92974 0.77429 0.76822 0.89386 0.86257 0.90229 0.88399 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 9.48 37.16 0.35 -1.72 16 2 C 0.15 2.01 2.58 -67.93 -0.17 1.84 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 C -0.13 -1.43 5.12 -26.73 -0.14 -1.56 16 5 C 0.07 0.84 6.93 37.16 0.26 1.10 16 6 O -0.58 -6.43 13.66 -35.23 -0.48 -6.91 16 7 N -0.74 -12.03 4.48 -54.81 -0.25 -12.28 16 8 C 0.57 11.93 7.73 -12.42 -0.10 11.83 16 9 O -0.58 -13.42 15.98 5.29 0.08 -13.33 16 10 C -0.29 -6.45 5.89 -104.73 -0.62 -7.07 16 11 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 12 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 13 C 0.13 3.26 5.57 -106.80 -0.60 2.67 16 14 C -0.44 -10.97 9.04 -37.75 -0.34 -11.31 16 15 H 0.08 2.00 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 17 N -0.77 -18.40 10.97 55.56 0.61 -17.79 16 18 Si 0.91 17.12 29.60 -169.99 -5.03 12.09 16 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 22 C -0.24 -5.76 9.73 -39.27 -0.38 -6.14 16 23 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.63 7.75 -51.93 -0.40 0.23 16 31 H 0.38 2.57 9.12 45.56 0.42 2.99 16 32 H 0.40 5.90 6.60 -40.82 -0.27 5.63 16 33 H 0.09 1.64 6.37 -52.48 -0.33 1.30 16 34 H 0.12 2.94 6.17 -52.49 -0.32 2.61 16 35 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 36 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.10 2.28 7.63 -52.49 -0.40 1.88 16 LS Contribution 315.19 15.07 4.75 4.75 Total: -1.00 -28.97 315.19 -7.45 -36.42 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -4.22 Total: 13.09 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.91 Total: -16.04 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.36 Total: -30.07 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.40 Total: -20.24 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.97 -7.45 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270398258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.257 kcal (2) G-P(sol) polarization free energy of solvation -28.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds