Wall clock time and date at job start Mon Mar 30 2020 00:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08990 * 109.47606 * 2 1 4 4 C 1.53008 * 109.47124 * 239.99677 * 2 1 3 5 5 C 1.52999 * 109.46932 * 175.00104 * 4 2 1 6 6 O 1.42900 * 109.46606 * 180.02562 * 5 4 2 7 7 N 1.46506 * 109.47156 * 120.00298 * 2 1 3 8 8 C 1.34777 * 119.99371 * 274.99969 * 7 2 1 9 9 O 1.21587 * 120.00484 * 359.97438 * 8 7 2 10 10 C 1.47647 * 119.99578 * 179.97438 * 8 7 2 11 11 C 1.40007 * 119.89735 * 359.72371 * 10 8 7 12 12 C 1.36315 * 120.10916 * 179.75894 * 11 10 8 13 13 C 1.40885 * 119.88881 * 0.51787 * 12 11 10 14 14 C 1.41113 * 120.10502 * 179.71850 * 13 12 11 15 15 H 1.07995 * 120.00047 * 155.08147 * 14 13 12 16 16 C 1.40223 * 119.99351 * 335.07935 * 14 13 12 17 17 N 1.30646 * 120.00581 * 342.20235 * 16 14 13 18 18 Si 1.86807 * 119.99617 * 162.20615 * 16 14 13 19 19 H 1.48507 * 109.46752 * 94.66047 * 18 16 14 20 20 H 1.48496 * 109.47078 * 214.65838 * 18 16 14 21 21 H 1.48492 * 109.47248 * 334.66234 * 18 16 14 22 22 C 1.40892 * 119.79581 * 359.73443 * 13 12 11 23 23 C 1.36316 * 119.88709 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47165 * 300.00082 * 1 2 3 25 25 H 1.09004 * 109.47648 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47004 * 59.99930 * 1 2 3 27 27 H 1.08997 * 109.46867 * 295.00503 * 4 2 1 28 28 H 1.09002 * 109.46771 * 55.00350 * 4 2 1 29 29 H 1.09000 * 109.47241 * 299.99617 * 5 4 2 30 30 H 1.09002 * 109.47192 * 60.00504 * 5 4 2 31 31 H 0.96706 * 113.99694 * 180.02562 * 6 5 4 32 32 H 0.96991 * 120.00470 * 94.99728 * 7 2 1 33 33 H 1.08007 * 119.94335 * 0.02562 * 11 10 8 34 34 H 1.07994 * 120.05523 * 180.22760 * 12 11 10 35 35 H 0.97003 * 119.99947 * 179.97438 * 17 16 14 36 36 H 1.07994 * 120.05897 * 179.97438 * 22 13 12 37 37 H 1.08002 * 119.94596 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0275 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 8 4.0410 -1.2866 -2.4807 7 7 2.0183 -0.6907 1.1962 8 6 2.1470 -0.0183 2.3571 9 8 1.8583 1.1616 2.4116 10 6 2.6386 -0.7144 3.5628 11 6 2.9650 -2.0744 3.4990 12 6 3.4239 -2.7203 4.6083 13 6 3.5593 -2.0196 5.8230 14 6 4.0283 -2.6851 6.9756 15 1 4.5087 -2.1254 7.7644 16 6 3.8704 -4.0731 7.0966 17 7 3.0068 -4.7006 6.3433 18 14 4.8948 -5.0252 8.3350 19 1 4.1288 -5.1774 9.5982 20 1 5.2149 -6.3670 7.7854 21 1 6.1549 -4.2879 8.6062 22 6 3.2246 -0.6523 5.8836 23 6 2.7711 -0.0139 4.7678 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 1.7515 -1.7716 -1.2056 28 1 1.6054 -0.2618 -2.1370 29 1 3.8532 0.4369 -1.3574 30 1 3.9994 -1.0729 -0.4259 31 1 5.0019 -1.2590 -2.5861 32 1 2.2490 -1.6318 1.1527 33 1 2.8570 -2.6117 2.5683 34 1 3.6789 -3.7685 4.5572 35 1 2.8979 -5.6609 6.4268 36 1 3.3263 -0.1112 6.8126 37 1 2.5139 1.0340 4.8133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270398258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:41 Heat of formation + Delta-G solvation = -108.968806 kcal Electronic energy + Delta-G solvation = -19210.945141 eV Core-core repulsion = 16144.139176 eV Total energy + Delta-G solvation = -3066.805965 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92363 -39.10989 -38.13732 -36.54570 -35.66703 -33.12639 -31.52409 -31.26647 -29.88461 -27.67603 -24.59945 -23.66084 -22.84675 -21.84996 -21.25792 -19.36515 -18.66749 -18.01181 -17.46551 -16.98287 -15.96659 -15.87194 -15.75100 -15.51439 -15.10023 -15.04957 -14.48183 -14.17648 -13.93352 -13.68470 -13.50895 -13.14701 -12.90803 -12.87267 -12.79498 -12.63088 -12.35741 -12.05209 -11.91772 -11.77799 -11.37134 -11.11583 -10.92790 -10.66620 -10.05823 -9.57469 -9.40415 -8.79618 -6.48458 0.44878 1.14786 1.38693 1.42504 1.55028 2.12760 2.18617 2.39874 2.79237 3.18360 3.69023 3.97000 4.00457 4.17687 4.30828 4.34324 4.43544 4.45665 4.49970 4.60182 4.81357 4.87386 4.92681 5.01649 5.04316 5.13578 5.17075 5.29358 5.30158 5.58100 5.66707 5.82747 5.94756 5.99447 6.22908 6.53910 6.72523 6.77241 6.84063 6.88994 7.46766 8.15850 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025370 B = 0.004289 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.394183 B = 6526.197785 C = 7100.371318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.072 0.928 4 C -0.116 4.116 5 C 0.074 3.926 6 O -0.589 6.589 7 N -0.721 5.721 8 C 0.574 3.426 9 O -0.604 6.604 10 C -0.294 4.294 11 C -0.053 4.053 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.475 4.475 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.799 5.799 18 Si 0.986 3.014 19 H -0.262 1.262 20 H -0.261 1.261 21 H -0.257 1.257 22 C -0.253 4.253 23 C -0.033 4.033 24 H 0.035 0.965 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.397 0.603 32 H 0.405 0.595 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.297 0.703 36 H 0.103 0.897 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -0.293 -11.070 11.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.090 0.910 4 C -0.154 4.154 5 C -0.004 4.004 6 O -0.398 6.398 7 N -0.374 5.374 8 C 0.367 3.633 9 O -0.488 6.488 10 C -0.298 4.298 11 C -0.072 4.072 12 C -0.218 4.218 13 C 0.098 3.902 14 C -0.503 4.503 15 H 0.103 0.897 16 C -0.180 4.180 17 N -0.423 5.423 18 Si 0.806 3.194 19 H -0.186 1.186 20 H -0.185 1.185 21 H -0.181 1.181 22 C -0.273 4.273 23 C -0.053 4.053 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.106 0.894 27 H 0.099 0.901 28 H 0.117 0.883 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.247 0.753 32 H 0.242 0.758 33 H 0.140 0.860 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.062 0.182 -11.212 11.213 hybrid contribution 0.897 -0.549 0.905 1.388 sum 0.959 -0.367 -10.306 10.357 Atomic orbital electron populations 1.22121 0.94408 1.02724 1.02296 1.20904 0.94758 0.96808 0.83471 0.91027 1.21726 0.94376 1.02250 0.97053 1.22158 0.95028 0.95923 0.87291 1.86383 1.29135 1.78868 1.45379 1.45934 1.68102 1.14259 1.09066 1.18356 0.75702 0.85587 0.83638 1.90612 1.54440 1.17695 1.86094 1.19218 1.21013 0.95295 0.94290 1.20712 0.96069 0.92565 0.97826 1.21006 1.08077 1.00264 0.92408 1.18135 0.86745 0.91757 0.93520 1.20119 1.33113 0.93461 1.03567 0.89702 1.26909 0.94278 0.98479 0.98307 1.69762 1.25675 1.12175 1.34647 0.85119 0.79005 0.77554 0.77715 1.18627 1.18547 1.18072 1.20857 1.12191 0.96315 0.97911 1.20517 0.94635 0.97948 0.92168 0.94529 0.91531 0.89407 0.90096 0.88344 0.93375 0.93885 0.75343 0.75773 0.85958 0.86906 0.89178 0.87869 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 9.48 71.98 0.68 -3.05 16 2 C 0.14 3.70 2.58 44.99 0.12 3.82 16 3 H 0.07 2.07 7.58 -2.39 -0.02 2.06 16 4 C -0.12 -2.31 5.12 30.60 0.16 -2.16 16 5 C 0.07 1.52 6.93 71.98 0.50 2.02 16 6 O -0.59 -11.58 13.66 -148.98 -2.03 -13.62 16 7 N -0.72 -22.37 4.48 -445.58 -2.00 -24.36 16 8 C 0.57 23.60 7.73 86.73 0.67 24.27 16 9 O -0.60 -28.21 15.98 -3.99 -0.06 -28.27 16 10 C -0.29 -13.26 5.89 -19.93 -0.12 -13.38 16 11 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 12 C -0.20 -9.73 8.63 22.47 0.19 -9.54 16 13 C 0.10 5.27 5.57 -21.28 -0.12 5.15 16 14 C -0.48 -23.97 9.04 23.46 0.21 -23.76 16 15 H 0.08 4.11 7.91 -2.91 -0.02 4.08 16 16 C 0.04 1.81 5.13 85.35 0.44 2.25 16 17 N -0.80 -38.05 10.97 21.87 0.24 -37.81 16 18 Si 0.99 34.54 29.60 68.60 2.03 36.57 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 21 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 22 C -0.25 -12.57 9.73 22.47 0.22 -12.35 16 23 C -0.03 -1.60 9.52 22.25 0.21 -1.39 16 24 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.96 7.75 -2.39 -0.02 0.94 16 31 H 0.40 4.45 9.12 -74.05 -0.68 3.78 16 32 H 0.41 11.14 6.60 -92.72 -0.61 10.52 16 33 H 0.12 4.31 6.37 -2.91 -0.02 4.30 16 34 H 0.11 5.62 6.17 -2.91 -0.02 5.60 16 35 H 0.30 12.53 8.29 -92.71 -0.77 11.76 16 36 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -62.56 315.19 1.36 -61.20 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.19 Total: 36.47 kcal Atomic # 6 Polarization: -33.56 SS G_CDS: 3.37 Total: -30.19 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -1.76 Total: -62.17 kcal Atomic # 8 Polarization: -39.79 SS G_CDS: -2.10 Total: -41.89 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Total: -62.56 1.36 -61.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270398258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.769 kcal (2) G-P(sol) polarization free energy of solvation -62.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds