Wall clock time and date at job start Mon Mar 30 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47455 * 2 1 4 4 C 1.53000 * 109.47289 * 120.00151 * 2 1 3 5 5 C 1.52997 * 109.47153 * 184.99780 * 4 2 1 6 6 H 1.09000 * 109.47611 * 305.00180 * 5 4 2 7 7 O 1.42906 * 109.46972 * 65.00104 * 5 4 2 8 8 C 1.50706 * 109.47238 * 184.99569 * 5 4 2 9 9 C 1.38235 * 119.99800 * 279.73058 * 8 5 4 10 10 C 1.38240 * 119.99311 * 179.80947 * 9 8 5 11 11 C 1.38236 * 120.00364 * 0.39406 * 10 9 8 12 12 C 1.38233 * 119.99562 * 359.85723 * 11 10 9 13 13 C 1.38232 * 119.99662 * 100.00217 * 8 5 4 14 14 N 1.46504 * 109.46905 * 239.99943 * 2 1 3 15 15 C 1.34770 * 120.00039 * 85.00134 * 14 2 1 16 16 O 1.21685 * 120.00082 * 0.02562 * 15 14 2 17 17 C 1.46380 * 120.00222 * 179.97438 * 15 14 2 18 18 H 1.08000 * 119.99621 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00467 * 179.97438 * 17 15 14 20 20 N 1.30669 * 119.99490 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00256 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46868 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47329 * 120.00355 * 21 19 17 24 24 H 1.48498 * 109.46987 * 240.00243 * 21 19 17 25 25 H 1.08993 * 109.46921 * 299.99695 * 1 2 3 26 26 H 1.08994 * 109.46971 * 60.00467 * 1 2 3 27 27 H 1.09000 * 109.46742 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47159 * 64.99648 * 4 2 1 29 29 H 1.09001 * 109.46685 * 305.00154 * 4 2 1 30 30 H 0.96696 * 113.99911 * 59.99963 * 7 5 4 31 31 H 1.07997 * 120.00401 * 359.97438 * 9 8 5 32 32 H 1.08001 * 119.99634 * 180.23079 * 10 9 8 33 33 H 1.08001 * 119.99982 * 179.83722 * 11 10 9 34 34 H 1.08004 * 119.99658 * 179.97438 * 12 11 10 35 35 H 1.07999 * 120.00225 * 359.97438 * 13 8 5 36 36 H 0.97003 * 119.99537 * 264.99658 * 14 2 1 37 37 H 0.97004 * 119.99856 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 3.9955 -0.9923 0.3867 7 8 3.9386 0.7549 1.4880 8 6 4.0774 -1.4259 2.4747 9 6 4.0265 -0.9092 3.7559 10 6 4.4931 -1.6562 4.8214 11 6 5.0180 -2.9165 4.6047 12 6 5.0736 -3.4310 3.3229 13 6 4.6036 -2.6856 2.2579 14 7 2.0183 -0.6906 -1.1962 15 6 2.1470 -0.0183 -2.3571 16 8 1.8581 1.1625 -2.4117 17 6 2.6354 -0.7082 -3.5522 18 1 2.8922 -1.7561 -3.5037 19 6 2.7687 -0.0098 -4.7587 20 7 2.4575 1.2579 -4.8175 21 14 3.3913 -0.8904 -6.2839 22 1 3.6712 -2.3113 -5.9554 23 1 2.3597 -0.8232 -7.3501 24 1 4.6372 -0.2368 -6.7589 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2618 2.1369 30 1 3.5896 1.1582 2.2946 31 1 3.6198 0.0769 3.9247 32 1 4.4499 -1.2540 5.8228 33 1 5.3849 -3.4990 5.4369 34 1 5.4841 -4.4156 3.1536 35 1 4.6470 -3.0877 1.2564 36 1 2.2490 -1.6318 -1.1526 37 1 2.5501 1.7419 -5.6531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274149205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:34 Heat of formation + Delta-G solvation = -77.930448 kcal Electronic energy + Delta-G solvation = -19502.859338 eV Core-core repulsion = 16437.399298 eV Total energy + Delta-G solvation = -3065.460040 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.74837 -37.86863 -36.60880 -34.27341 -32.36157 -31.69705 -30.95023 -30.00775 -27.94657 -26.02750 -23.97400 -22.67283 -21.20558 -20.81446 -19.28313 -17.63749 -17.10466 -15.96819 -15.69349 -15.33149 -15.14010 -14.71131 -14.13830 -14.04130 -13.75084 -13.42895 -13.05402 -12.69193 -12.55277 -12.29114 -11.86489 -11.61630 -11.52364 -11.27932 -11.22692 -11.01870 -10.94241 -10.79850 -10.40826 -10.22771 -10.11247 -9.77210 -9.02406 -8.81922 -8.76911 -7.52458 -7.41690 -6.12314 -4.57656 1.24182 1.29802 3.16195 3.24195 3.28399 3.66873 4.14982 4.56882 4.61399 4.66308 4.77194 4.86328 4.91464 5.00069 5.23184 5.37286 5.38659 5.50463 5.57600 5.82489 5.86888 5.87481 5.97109 6.09772 6.14425 6.25938 6.30407 6.35946 6.39642 6.59268 6.80497 6.89209 6.92690 7.48800 7.79962 8.00320 8.19750 8.39970 9.08777 9.62341 10.67248 10.87361 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.004572 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.739931 B = 6122.252455 C = 6721.824353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.083 0.917 4 C -0.148 4.148 5 C 0.146 3.854 6 H 0.114 0.886 7 O -0.544 6.544 8 C -0.107 4.107 9 C -0.115 4.115 10 C -0.120 4.120 11 C -0.127 4.127 12 C -0.119 4.119 13 C -0.110 4.110 14 N -0.761 5.761 15 C 0.557 3.443 16 O -0.578 6.578 17 C -0.547 4.547 18 H 0.066 0.934 19 C 0.088 3.912 20 N -0.768 5.768 21 Si 0.905 3.095 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.365 0.635 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.126 0.874 36 H 0.376 0.624 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.589 -8.135 16.918 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.047 3.953 3 H 0.101 0.899 4 C -0.187 4.187 5 C 0.087 3.913 6 H 0.132 0.868 7 O -0.349 6.349 8 C -0.107 4.107 9 C -0.133 4.133 10 C -0.138 4.138 11 C -0.146 4.146 12 C -0.137 4.137 13 C -0.128 4.128 14 N -0.416 5.416 15 C 0.361 3.639 16 O -0.460 6.460 17 C -0.584 4.584 18 H 0.084 0.916 19 C -0.131 4.131 20 N -0.397 5.397 21 Si 0.730 3.270 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.202 1.202 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.212 0.788 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.207 0.793 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.664 -7.174 16.192 17.910 hybrid contribution 0.087 -0.957 -0.121 0.969 sum 2.750 -8.132 16.071 18.220 Atomic orbital electron populations 1.22184 0.97240 1.00815 1.01452 1.20436 0.92446 0.97954 0.84441 0.89876 1.22561 0.95007 1.01891 0.99214 1.20933 0.93875 0.80942 0.95527 0.86796 1.86765 1.77029 1.24417 1.46639 1.20792 0.98471 0.95735 0.95705 1.20896 1.00344 0.99816 0.92253 1.21094 0.99095 0.94847 0.98728 1.21133 1.00335 0.96068 0.97014 1.21155 0.99848 0.99851 0.92817 1.21093 0.98118 0.94121 0.99472 1.46190 1.73196 1.12479 1.09727 1.18171 0.77730 0.86373 0.81644 1.90593 1.54606 1.16380 1.84459 1.20925 1.46910 0.97086 0.93475 0.91579 1.25688 0.93364 0.94435 0.99646 1.70035 1.35468 1.08168 1.26028 0.86363 0.78789 0.80283 0.81570 1.18857 1.20252 1.20210 0.93543 0.91852 0.93591 0.90988 0.91224 0.78821 0.86273 0.86202 0.86315 0.86066 0.85625 0.79304 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.48 37.16 0.35 -2.44 16 2 C 0.15 2.90 2.53 -67.93 -0.17 2.73 16 3 H 0.08 1.85 7.13 -51.93 -0.37 1.48 16 4 C -0.15 -2.08 4.41 -26.73 -0.12 -2.20 16 5 C 0.15 2.13 3.15 -27.88 -0.09 2.05 16 6 H 0.11 1.91 7.48 -51.93 -0.39 1.52 16 7 O -0.54 -8.62 12.64 -35.23 -0.45 -9.07 16 8 C -0.11 -1.34 4.97 -104.62 -0.52 -1.86 16 9 C -0.12 -1.26 9.32 -39.58 -0.37 -1.63 16 10 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 11 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 12 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 13 C -0.11 -1.30 9.67 -39.58 -0.38 -1.69 16 14 N -0.76 -16.78 4.44 -55.21 -0.25 -17.02 16 15 C 0.56 15.89 7.71 -12.99 -0.10 15.79 16 16 O -0.58 -18.84 14.68 5.20 0.08 -18.76 16 17 C -0.55 -15.58 9.54 -35.63 -0.34 -15.92 16 18 H 0.07 1.73 7.85 -52.49 -0.41 1.31 16 19 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 20 N -0.77 -23.39 11.83 55.55 0.66 -22.73 16 21 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 22 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.37 4.18 7.50 45.56 0.34 4.52 16 31 H 0.12 1.07 6.78 -52.49 -0.36 0.72 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 35 H 0.13 1.38 8.04 -52.49 -0.42 0.96 16 36 H 0.38 7.29 8.58 -40.82 -0.35 6.94 16 37 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -35.71 317.43 -7.70 -43.41 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.47 Total: 11.60 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.03 Total: -7.61 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.41 Total: -39.75 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.37 Total: -27.83 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.71 -7.70 -43.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274149205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.519 kcal (2) G-P(sol) polarization free energy of solvation -35.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds