Wall clock time and date at job start Mon Mar 30 2020 00:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47455 * 2 1 4 4 C 1.53000 * 109.47289 * 120.00151 * 2 1 3 5 5 C 1.52997 * 109.47153 * 184.99780 * 4 2 1 6 6 H 1.09000 * 109.47611 * 305.00180 * 5 4 2 7 7 O 1.42906 * 109.46972 * 65.00104 * 5 4 2 8 8 C 1.50706 * 109.47238 * 184.99569 * 5 4 2 9 9 C 1.38235 * 119.99800 * 279.73058 * 8 5 4 10 10 C 1.38240 * 119.99311 * 179.80947 * 9 8 5 11 11 C 1.38236 * 120.00364 * 0.39406 * 10 9 8 12 12 C 1.38233 * 119.99562 * 359.85723 * 11 10 9 13 13 C 1.38232 * 119.99662 * 100.00217 * 8 5 4 14 14 N 1.46504 * 109.46905 * 239.99943 * 2 1 3 15 15 C 1.34770 * 120.00039 * 85.00134 * 14 2 1 16 16 O 1.21685 * 120.00082 * 0.02562 * 15 14 2 17 17 C 1.46380 * 120.00222 * 179.97438 * 15 14 2 18 18 H 1.08000 * 119.99621 * 0.02562 * 17 15 14 19 19 C 1.40047 * 120.00467 * 179.97438 * 17 15 14 20 20 N 1.30669 * 119.99490 * 0.02562 * 19 17 15 21 21 Si 1.86796 * 120.00256 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46868 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47329 * 120.00355 * 21 19 17 24 24 H 1.48498 * 109.46987 * 240.00243 * 21 19 17 25 25 H 1.08993 * 109.46921 * 299.99695 * 1 2 3 26 26 H 1.08994 * 109.46971 * 60.00467 * 1 2 3 27 27 H 1.09000 * 109.46742 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47159 * 64.99648 * 4 2 1 29 29 H 1.09001 * 109.46685 * 305.00154 * 4 2 1 30 30 H 0.96696 * 113.99911 * 59.99963 * 7 5 4 31 31 H 1.07997 * 120.00401 * 359.97438 * 9 8 5 32 32 H 1.08001 * 119.99634 * 180.23079 * 10 9 8 33 33 H 1.08001 * 119.99982 * 179.83722 * 11 10 9 34 34 H 1.08004 * 119.99658 * 179.97438 * 12 11 10 35 35 H 1.07999 * 120.00225 * 359.97438 * 13 8 5 36 36 H 0.97003 * 119.99537 * 264.99658 * 14 2 1 37 37 H 0.97004 * 119.99856 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.6133 1.3136 6 1 3.9955 -0.9923 0.3867 7 8 3.9386 0.7549 1.4880 8 6 4.0774 -1.4259 2.4747 9 6 4.0265 -0.9092 3.7559 10 6 4.4931 -1.6562 4.8214 11 6 5.0180 -2.9165 4.6047 12 6 5.0736 -3.4310 3.3229 13 6 4.6036 -2.6856 2.2579 14 7 2.0183 -0.6906 -1.1962 15 6 2.1470 -0.0183 -2.3571 16 8 1.8581 1.1625 -2.4117 17 6 2.6354 -0.7082 -3.5522 18 1 2.8922 -1.7561 -3.5037 19 6 2.7687 -0.0098 -4.7587 20 7 2.4575 1.2579 -4.8175 21 14 3.3913 -0.8904 -6.2839 22 1 3.6712 -2.3113 -5.9554 23 1 2.3597 -0.8232 -7.3501 24 1 4.6372 -0.2368 -6.7589 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.7516 -1.7715 1.2056 29 1 1.6054 -0.2618 2.1369 30 1 3.5896 1.1582 2.2946 31 1 3.6198 0.0769 3.9247 32 1 4.4499 -1.2540 5.8228 33 1 5.3849 -3.4990 5.4369 34 1 5.4841 -4.4156 3.1536 35 1 4.6470 -3.0877 1.2564 36 1 2.2490 -1.6318 -1.1526 37 1 2.5501 1.7419 -5.6531 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274149205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:33 Heat of formation + Delta-G solvation = -104.401493 kcal Electronic energy + Delta-G solvation = -19504.007209 eV Core-core repulsion = 16437.399298 eV Total energy + Delta-G solvation = -3066.607911 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.73288 -39.54165 -38.01866 -36.01066 -34.52223 -32.79172 -31.78395 -31.66954 -29.14430 -28.16090 -25.10432 -23.49030 -22.80020 -21.89597 -21.12814 -19.27883 -18.42829 -17.51616 -17.01821 -16.66676 -16.36995 -16.09724 -15.84388 -15.09785 -14.91548 -14.68185 -14.32926 -14.21869 -14.12940 -13.69627 -13.35475 -13.02703 -12.86900 -12.74561 -12.65476 -12.57056 -12.48340 -12.15726 -11.97332 -11.85705 -11.65376 -10.93960 -10.91663 -9.81181 -9.78347 -9.66701 -9.36002 -8.26036 -6.82211 0.42146 0.51152 1.39504 1.40109 1.57528 2.25538 2.51734 2.85488 3.17591 3.50858 3.60825 3.68101 3.94769 4.06020 4.16054 4.21417 4.27393 4.32658 4.54888 4.64378 4.66420 4.68808 4.85367 4.89523 5.01682 5.09331 5.18610 5.24982 5.33878 5.39390 5.57524 5.63065 5.70339 5.92579 6.12077 6.28959 6.38927 6.82549 6.89856 7.62515 8.55517 8.72977 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025339 B = 0.004572 C = 0.004165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.739931 B = 6122.252455 C = 6721.824353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.150 3.850 3 H 0.043 0.957 4 C -0.131 4.131 5 C 0.151 3.849 6 H 0.082 0.918 7 O -0.572 6.572 8 C -0.122 4.122 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.128 4.128 12 C -0.125 4.125 13 C -0.129 4.129 14 N -0.747 5.747 15 C 0.541 3.459 16 O -0.631 6.631 17 C -0.576 4.576 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.824 5.824 21 Si 0.996 3.004 22 H -0.247 1.247 23 H -0.268 1.268 24 H -0.270 1.270 25 H 0.080 0.920 26 H 0.018 0.982 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.383 0.617 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.123 0.877 36 H 0.391 0.609 37 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.091 -10.467 18.557 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.061 0.939 4 C -0.169 4.169 5 C 0.092 3.908 6 H 0.100 0.900 7 O -0.379 6.379 8 C -0.122 4.122 9 C -0.141 4.141 10 C -0.140 4.140 11 C -0.145 4.145 12 C -0.143 4.143 13 C -0.147 4.147 14 N -0.401 5.401 15 C 0.345 3.655 16 O -0.518 6.518 17 C -0.613 4.613 18 H 0.104 0.896 19 C -0.187 4.187 20 N -0.453 5.453 21 Si 0.816 3.184 22 H -0.169 1.169 23 H -0.193 1.193 24 H -0.195 1.195 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.232 0.768 31 H 0.153 0.847 32 H 0.163 0.837 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.141 0.859 36 H 0.224 0.776 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.158 -9.554 17.895 20.530 hybrid contribution -0.057 -0.224 -0.497 0.549 sum 3.100 -9.778 17.398 20.197 Atomic orbital electron populations 1.22093 0.96004 1.01906 1.00914 1.20579 0.93395 0.96292 0.85235 0.93903 1.22420 0.94766 1.02326 0.97350 1.20727 0.93929 0.80722 0.95448 0.89987 1.86711 1.77623 1.25427 1.48173 1.20573 1.00204 0.95936 0.95480 1.21141 1.00388 1.00693 0.91835 1.21450 0.98175 0.94819 0.99587 1.21528 0.99279 0.96227 0.97496 1.21429 0.99468 1.00596 0.92758 1.21237 0.98916 0.94390 1.00125 1.45845 1.72006 1.12983 1.09293 1.18537 0.77448 0.86002 0.83544 1.90545 1.56850 1.18598 1.85760 1.21484 1.47324 0.98190 0.94283 0.89648 1.26959 0.92850 0.95121 1.03740 1.70210 1.36983 1.10578 1.27570 0.84997 0.78129 0.79378 0.75915 1.16949 1.19334 1.19506 0.90145 0.96306 0.91574 0.89279 0.88240 0.76794 0.84701 0.83652 0.83679 0.84153 0.85891 0.77617 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.48 71.98 0.68 -4.61 16 2 C 0.15 5.78 2.53 44.99 0.11 5.89 16 3 H 0.04 2.01 7.13 -2.39 -0.02 1.99 16 4 C -0.13 -3.51 4.41 30.59 0.13 -3.37 16 5 C 0.15 4.40 3.15 29.85 0.09 4.49 16 6 H 0.08 2.87 7.48 -2.39 -0.02 2.85 16 7 O -0.57 -18.43 12.64 -148.98 -1.88 -20.31 16 8 C -0.12 -2.91 4.97 -19.86 -0.10 -3.01 16 9 C -0.12 -2.41 9.32 22.27 0.21 -2.20 16 10 C -0.12 -2.02 10.05 22.27 0.22 -1.79 16 11 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 12 C -0.12 -2.29 10.05 22.27 0.22 -2.07 16 13 C -0.13 -2.91 9.67 22.27 0.22 -2.70 16 14 N -0.75 -33.90 4.44 -446.82 -1.99 -35.88 16 15 C 0.54 32.18 7.71 86.36 0.67 32.85 16 16 O -0.63 -43.50 14.68 -4.30 -0.06 -43.56 16 17 C -0.58 -33.52 9.54 24.83 0.24 -33.28 16 18 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 19 C 0.03 1.60 5.50 85.30 0.47 2.07 16 20 N -0.82 -51.98 11.83 21.83 0.26 -51.72 16 21 Si 1.00 42.13 29.56 68.60 2.03 44.16 16 22 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 25 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.78 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.38 8.60 7.50 -74.06 -0.56 8.05 16 31 H 0.14 2.09 6.78 -2.91 -0.02 2.07 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 34 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.12 2.70 8.04 -2.91 -0.02 2.68 16 36 H 0.39 15.29 8.58 -92.71 -0.80 14.50 16 37 H 0.27 15.56 8.29 -92.70 -0.77 14.79 16 Total: -1.00 -82.17 317.43 1.48 -80.69 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.27 Total: 36.18 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: 3.39 Total: -9.55 kcal Atomic # 7 Polarization: -85.88 SS G_CDS: -1.73 Total: -87.61 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -1.95 Total: -63.87 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -82.17 1.48 -80.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274149205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.714 kcal (2) G-P(sol) polarization free energy of solvation -82.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds