Wall clock time and date at job start Mon Mar 30 2020 00:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47239 * 283.51991 * 3 2 1 5 5 C 1.37102 * 119.99879 * 263.74169 * 4 3 2 6 6 H 1.07999 * 119.99810 * 142.46700 * 5 4 3 7 7 C 1.38942 * 120.00122 * 322.45940 * 5 4 3 8 8 N 1.31415 * 120.00038 * 157.51792 * 7 5 4 9 9 Si 1.86800 * 120.00168 * 337.51910 * 7 5 4 10 10 H 1.48501 * 109.47254 * 95.70451 * 9 7 5 11 11 H 1.48500 * 109.47252 * 215.70205 * 9 7 5 12 12 H 1.48503 * 109.47082 * 335.70342 * 9 7 5 13 13 C 1.34771 * 119.99857 * 83.73745 * 4 3 2 14 14 O 1.21298 * 120.00134 * 180.02562 * 13 4 3 15 15 C 1.50706 * 120.00166 * 0.02562 * 13 4 3 16 16 C 1.52996 * 109.47299 * 179.97438 * 15 13 4 17 17 H 1.09007 * 110.50684 * 56.30098 * 16 15 13 18 18 C 1.54983 * 110.57158 * 293.54749 * 16 15 13 19 19 C 1.54888 * 102.33473 * 204.34452 * 18 16 15 20 20 C 1.51846 * 104.42985 * 37.62697 * 19 18 16 21 21 O 1.20759 * 126.34202 * 156.22531 * 20 19 18 22 22 C 1.51447 * 107.31889 * 336.20709 * 20 19 18 23 23 H 1.08996 * 109.98499 * 241.00647 * 22 20 19 24 24 C 1.53002 * 109.98601 * 119.70284 * 22 20 19 25 25 H 4.40642 * 5.51398 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47412 * 43.52324 * 3 2 1 27 27 H 1.09003 * 109.47025 * 163.52836 * 3 2 1 28 28 H 0.97002 * 120.00242 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46800 * 300.00299 * 15 13 4 30 30 H 1.08994 * 109.46814 * 59.99771 * 15 13 4 31 31 H 1.08997 * 110.83263 * 322.55868 * 18 16 15 32 32 H 1.09007 * 110.83390 * 85.93962 * 18 16 15 33 33 H 1.08999 * 110.44203 * 156.36390 * 19 18 16 34 34 H 1.08998 * 110.44718 * 278.76420 * 19 18 16 35 35 H 1.08997 * 109.47227 * 302.59225 * 24 22 20 36 36 H 1.09001 * 109.46748 * 62.58251 * 24 22 20 37 37 H 1.08996 * 109.47368 * 182.58216 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3220 1.3430 5 6 3.4846 0.6847 2.2053 6 1 3.2647 0.5941 3.2588 7 6 4.1224 1.8213 1.7240 8 7 4.0690 2.9434 2.4060 9 14 5.0559 1.7547 0.1073 10 1 4.1780 2.2319 -0.9913 11 1 6.2575 2.6229 0.1933 12 1 5.4742 0.3561 -0.1655 13 6 3.2396 -1.6085 1.7307 14 8 3.6437 -1.8757 2.8427 15 6 2.8553 -2.7151 0.7826 16 6 3.0682 -4.0680 1.4646 17 1 2.5063 -4.1180 2.3974 18 6 4.5760 -4.3162 1.7232 19 6 4.6501 -5.8618 1.7902 20 6 3.6672 -6.3340 0.7335 21 8 3.6829 -7.4004 0.1670 22 6 2.6633 -5.2200 0.5218 23 1 1.6611 -5.5697 0.7697 24 6 2.7073 -4.7457 -0.9322 25 1 -1.0500 -0.0002 0.0000 26 1 3.0097 -0.7443 -0.7076 27 1 3.0088 0.9863 -0.2914 28 1 4.5146 3.7368 2.0702 29 1 1.8064 -2.6083 0.5057 30 1 3.4748 -2.6583 -0.1124 31 1 5.1786 -3.9345 0.8991 32 1 4.8861 -3.8689 2.6677 33 1 5.6573 -6.2052 1.5539 34 1 4.3502 -6.2150 2.7767 35 1 3.7180 -4.4198 -1.1776 36 1 2.4201 -5.5655 -1.5906 37 1 2.0152 -3.9141 -1.0642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281873888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:59 Heat of formation + Delta-G solvation = -13.956732 kcal Electronic energy + Delta-G solvation = -20138.597133 eV Core-core repulsion = 17075.911201 eV Total energy + Delta-G solvation = -3062.685932 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.23475 -38.87219 -36.73543 -35.26824 -32.75282 -31.73867 -31.50514 -29.95942 -26.80977 -25.85185 -24.97024 -23.81667 -20.52298 -19.13182 -18.63768 -18.23171 -16.83204 -16.70364 -15.95007 -15.76128 -15.34125 -14.82494 -14.60806 -14.14348 -13.49924 -13.24956 -13.14916 -13.12848 -12.75266 -12.62998 -12.40270 -12.03162 -11.94338 -11.72841 -11.24916 -11.02046 -10.87839 -10.76919 -10.50837 -10.33508 -10.28492 -9.81787 -9.60724 -9.38074 -9.18005 -8.52990 -7.92371 -6.45659 -4.03458 1.89502 2.94605 3.11223 3.13597 3.17175 3.29395 3.66652 4.07603 4.10447 4.32166 4.58147 4.73195 4.80878 4.93310 5.04291 5.14956 5.25362 5.33118 5.44464 5.52983 5.59403 5.65733 5.73545 5.75059 5.87999 5.92999 6.00539 6.02650 6.13005 6.16176 6.34469 6.48871 6.52991 7.46060 7.46350 8.03402 8.22461 8.41788 8.89359 9.23664 9.67714 10.66487 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024369 B = 0.006017 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.730387 B = 4652.303503 C = 5054.653427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.176 4.176 3 C 0.192 3.808 4 N -0.465 5.465 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.061 3.939 8 N -0.860 5.860 9 Si 0.865 3.135 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.260 1.260 13 C 0.472 3.528 14 O -0.555 6.555 15 C -0.134 4.134 16 C -0.064 4.064 17 H 0.090 0.910 18 C -0.111 4.111 19 C -0.184 4.184 20 C 0.375 3.625 21 O -0.454 6.454 22 C -0.152 4.152 23 H 0.100 0.900 24 C -0.140 4.140 25 H 0.213 0.787 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.274 0.726 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -11.141 -7.375 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.177 4.177 3 C 0.069 3.931 4 N -0.186 5.186 5 C -0.444 4.444 6 H 0.123 0.877 7 C -0.145 4.145 8 N -0.495 5.495 9 Si 0.692 3.308 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.184 1.184 13 C 0.261 3.739 14 O -0.436 6.436 15 C -0.175 4.175 16 C -0.083 4.083 17 H 0.108 0.892 18 C -0.148 4.148 19 C -0.222 4.222 20 C 0.251 3.749 21 O -0.328 6.328 22 C -0.171 4.171 23 H 0.118 0.882 24 C -0.198 4.198 25 H 0.230 0.770 26 H 0.103 0.897 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.394 -11.620 -7.058 13.805 hybrid contribution 0.193 0.447 -0.861 0.989 sum -2.201 -11.173 -7.919 13.871 Atomic orbital electron populations 1.24739 0.95675 1.02285 1.00927 1.23784 0.94892 0.99267 0.99777 1.18916 0.83970 1.02387 0.87855 1.43708 1.57163 1.05449 1.12315 1.19021 1.37701 0.94869 0.92798 0.87659 1.25352 0.96304 0.94843 0.97995 1.69766 1.40108 0.99755 1.39898 0.87131 0.80706 0.79363 0.83648 1.20053 1.20904 1.18394 1.20279 0.81511 0.83174 0.88901 1.90541 1.48645 1.82537 1.21849 1.21838 1.02721 0.93713 0.99193 1.21627 0.97233 0.91508 0.97884 0.89174 1.22525 0.95887 0.92151 1.04256 1.22957 1.00339 0.98755 1.00124 1.25114 0.84652 0.85547 0.79579 1.90377 1.71712 1.23994 1.46692 1.22352 1.00445 0.96298 0.98012 0.88200 1.21766 1.02789 1.01769 0.93432 0.77008 0.89667 0.88610 0.91512 0.89746 0.89651 0.91347 0.88503 0.89349 0.87832 0.92110 0.92347 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.46 19.25 29.55 0.57 -2.89 16 2 C -0.18 -3.23 12.91 -37.13 -0.48 -3.71 16 3 C 0.19 3.74 4.27 -6.83 -0.03 3.71 16 4 N -0.46 -10.74 2.15 -117.94 -0.25 -11.00 16 5 C -0.32 -8.70 9.36 -14.93 -0.14 -8.84 16 6 H 0.11 3.28 7.91 -52.49 -0.42 2.86 16 7 C 0.06 1.64 5.26 -17.47 -0.09 1.55 16 8 N -0.86 -24.35 13.96 55.50 0.77 -23.57 16 9 Si 0.86 19.39 25.05 -169.99 -4.26 15.13 16 10 H -0.27 -5.71 6.69 56.52 0.38 -5.33 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 13 C 0.47 10.10 7.35 -10.99 -0.08 10.02 16 14 O -0.55 -13.58 14.41 5.54 0.08 -13.50 16 15 C -0.13 -2.06 2.51 -27.88 -0.07 -2.13 16 16 C -0.06 -0.86 2.42 -88.91 -0.22 -1.08 16 17 H 0.09 1.30 8.03 -51.93 -0.42 0.89 16 18 C -0.11 -1.50 5.66 -24.69 -0.14 -1.64 16 19 C -0.18 -2.10 6.72 -26.32 -0.18 -2.27 16 20 C 0.38 4.75 7.18 -28.10 -0.20 4.55 16 21 O -0.45 -6.98 17.99 6.00 0.11 -6.87 16 22 C -0.15 -1.75 3.36 -90.73 -0.31 -2.06 16 23 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 24 C -0.14 -1.49 7.95 37.16 0.30 -1.19 16 25 H 0.21 2.45 7.80 -54.09 -0.42 2.03 16 26 H 0.09 1.34 6.70 -51.93 -0.35 1.00 16 27 H 0.10 1.99 3.62 -51.93 -0.19 1.80 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.08 1.20 6.93 -51.93 -0.36 0.84 16 30 H 0.09 1.17 5.94 -51.93 -0.31 0.86 16 31 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 32 H 0.10 1.52 7.11 -51.92 -0.37 1.15 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 0.64 7.63 -51.93 -0.40 0.24 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.72 6.63 -51.93 -0.34 0.37 16 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -31.57 305.84 -4.84 -36.41 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -4.83 Total: 4.78 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -1.06 Total: -5.99 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.52 Total: -34.57 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.19 Total: -20.38 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -4.26 Total: 15.13 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.57 -4.84 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281873888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.455 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds