Wall clock time and date at job start Mon Mar 30 2020 00:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46504 * 109.47239 * 283.51991 * 3 2 1 5 5 C 1.37102 * 119.99879 * 263.74169 * 4 3 2 6 6 H 1.07999 * 119.99810 * 142.46700 * 5 4 3 7 7 C 1.38942 * 120.00122 * 322.45940 * 5 4 3 8 8 N 1.31415 * 120.00038 * 157.51792 * 7 5 4 9 9 Si 1.86800 * 120.00168 * 337.51910 * 7 5 4 10 10 H 1.48501 * 109.47254 * 95.70451 * 9 7 5 11 11 H 1.48500 * 109.47252 * 215.70205 * 9 7 5 12 12 H 1.48503 * 109.47082 * 335.70342 * 9 7 5 13 13 C 1.34771 * 119.99857 * 83.73745 * 4 3 2 14 14 O 1.21298 * 120.00134 * 180.02562 * 13 4 3 15 15 C 1.50706 * 120.00166 * 0.02562 * 13 4 3 16 16 C 1.52996 * 109.47299 * 179.97438 * 15 13 4 17 17 H 1.09007 * 110.50684 * 56.30098 * 16 15 13 18 18 C 1.54983 * 110.57158 * 293.54749 * 16 15 13 19 19 C 1.54888 * 102.33473 * 204.34452 * 18 16 15 20 20 C 1.51846 * 104.42985 * 37.62697 * 19 18 16 21 21 O 1.20759 * 126.34202 * 156.22531 * 20 19 18 22 22 C 1.51447 * 107.31889 * 336.20709 * 20 19 18 23 23 H 1.08996 * 109.98499 * 241.00647 * 22 20 19 24 24 C 1.53002 * 109.98601 * 119.70284 * 22 20 19 25 25 H 4.40642 * 5.51398 * 180.02562 * 4 1 2 26 26 H 1.08993 * 109.47412 * 43.52324 * 3 2 1 27 27 H 1.09003 * 109.47025 * 163.52836 * 3 2 1 28 28 H 0.97002 * 120.00242 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.46800 * 300.00299 * 15 13 4 30 30 H 1.08994 * 109.46814 * 59.99771 * 15 13 4 31 31 H 1.08997 * 110.83263 * 322.55868 * 18 16 15 32 32 H 1.09007 * 110.83390 * 85.93962 * 18 16 15 33 33 H 1.08999 * 110.44203 * 156.36390 * 19 18 16 34 34 H 1.08998 * 110.44718 * 278.76420 * 19 18 16 35 35 H 1.08997 * 109.47227 * 302.59225 * 24 22 20 36 36 H 1.09001 * 109.46748 * 62.58251 * 24 22 20 37 37 H 1.08996 * 109.47368 * 182.58216 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1345 -0.3220 1.3430 5 6 3.4846 0.6847 2.2053 6 1 3.2647 0.5941 3.2588 7 6 4.1224 1.8213 1.7240 8 7 4.0690 2.9434 2.4060 9 14 5.0559 1.7547 0.1073 10 1 4.1780 2.2319 -0.9913 11 1 6.2575 2.6229 0.1933 12 1 5.4742 0.3561 -0.1655 13 6 3.2396 -1.6085 1.7307 14 8 3.6437 -1.8757 2.8427 15 6 2.8553 -2.7151 0.7826 16 6 3.0682 -4.0680 1.4646 17 1 2.5063 -4.1180 2.3974 18 6 4.5760 -4.3162 1.7232 19 6 4.6501 -5.8618 1.7902 20 6 3.6672 -6.3340 0.7335 21 8 3.6829 -7.4004 0.1670 22 6 2.6633 -5.2200 0.5218 23 1 1.6611 -5.5697 0.7697 24 6 2.7073 -4.7457 -0.9322 25 1 -1.0500 -0.0002 0.0000 26 1 3.0097 -0.7443 -0.7076 27 1 3.0088 0.9863 -0.2914 28 1 4.5146 3.7368 2.0702 29 1 1.8064 -2.6083 0.5057 30 1 3.4748 -2.6583 -0.1124 31 1 5.1786 -3.9345 0.8991 32 1 4.8861 -3.8689 2.6677 33 1 5.6573 -6.2052 1.5539 34 1 4.3502 -6.2150 2.7767 35 1 3.7180 -4.4198 -1.1776 36 1 2.4201 -5.5655 -1.5906 37 1 2.0152 -3.9141 -1.0642 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281873888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:59 Heat of formation + Delta-G solvation = -34.028522 kcal Electronic energy + Delta-G solvation = -20139.467511 eV Core-core repulsion = 17075.911201 eV Total energy + Delta-G solvation = -3063.556310 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.40182 -40.37922 -37.94471 -36.92746 -34.54145 -33.26796 -32.58783 -31.17522 -28.37205 -27.35960 -25.92633 -25.28470 -21.78588 -20.47169 -20.11208 -19.49929 -18.46927 -18.01228 -17.55017 -17.06467 -16.52071 -16.21621 -15.76878 -15.55617 -14.94328 -14.84972 -14.62891 -14.22755 -14.19874 -13.96167 -13.56191 -13.46214 -13.06339 -12.85568 -12.72861 -12.63466 -12.26773 -11.99614 -11.83854 -11.59716 -11.39492 -11.31223 -11.10979 -10.95685 -10.41844 -10.21799 -9.82500 -8.50247 -6.13365 0.90900 1.19959 1.32991 1.44904 1.72903 1.95558 2.01809 2.19110 2.88079 2.95579 3.14371 3.51685 3.62446 3.71569 3.85673 4.10450 4.20803 4.25936 4.30092 4.35517 4.43582 4.53721 4.63713 4.68203 4.82360 4.89124 4.94726 5.06148 5.11625 5.13792 5.25777 5.40605 5.43209 5.53896 6.05940 6.47831 6.54363 6.75970 6.95933 7.30290 7.88522 8.67182 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024369 B = 0.006017 C = 0.005538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.730387 B = 4652.303503 C = 5054.653427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.232 4.232 3 C 0.190 3.810 4 N -0.479 5.479 5 C -0.332 4.332 6 H 0.042 0.958 7 C 0.011 3.989 8 N -0.912 5.912 9 Si 0.936 3.064 10 H -0.242 1.242 11 H -0.287 1.287 12 H -0.243 1.243 13 C 0.466 3.534 14 O -0.598 6.598 15 C -0.121 4.121 16 C -0.062 4.062 17 H 0.077 0.923 18 C -0.112 4.112 19 C -0.177 4.177 20 C 0.381 3.619 21 O -0.482 6.482 22 C -0.141 4.141 23 H 0.116 0.884 24 C -0.143 4.143 25 H 0.253 0.747 26 H 0.127 0.873 27 H 0.082 0.918 28 H 0.279 0.721 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -12.563 -10.630 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.234 4.234 3 C 0.068 3.932 4 N -0.201 5.201 5 C -0.460 4.460 6 H 0.060 0.940 7 C -0.191 4.191 8 N -0.549 5.549 9 Si 0.758 3.242 10 H -0.167 1.167 11 H -0.214 1.214 12 H -0.166 1.166 13 C 0.257 3.743 14 O -0.481 6.481 15 C -0.160 4.160 16 C -0.081 4.081 17 H 0.095 0.905 18 C -0.150 4.150 19 C -0.214 4.214 20 C 0.259 3.741 21 O -0.357 6.357 22 C -0.160 4.160 23 H 0.133 0.867 24 C -0.200 4.200 25 H 0.269 0.731 26 H 0.145 0.855 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.225 -13.050 -10.332 16.954 hybrid contribution 0.330 0.882 0.295 0.987 sum -2.895 -12.168 -10.037 16.037 Atomic orbital electron populations 1.25696 0.96533 0.99541 0.97971 1.23813 0.95313 1.01847 1.02394 1.18993 0.85168 1.02901 0.86099 1.43822 1.57929 1.05060 1.13277 1.18590 1.39233 0.96867 0.91319 0.93984 1.26167 0.96491 0.93722 1.02718 1.69892 1.41469 1.00750 1.42786 0.86002 0.78870 0.80196 0.79086 1.16725 1.21365 1.16596 1.21393 0.79859 0.83899 0.89152 1.90522 1.50107 1.83317 1.24153 1.21847 1.04236 0.91628 0.98317 1.21573 0.97127 0.91555 0.97883 0.90490 1.22448 0.96018 0.93575 1.02914 1.22915 1.00958 0.96986 1.00558 1.25231 0.84723 0.85176 0.78950 1.90381 1.72501 1.25091 1.47719 1.22263 1.00777 0.94705 0.98254 0.86660 1.21821 1.03389 1.02484 0.92318 0.73090 0.85532 0.90076 0.91125 0.87738 0.86945 0.90904 0.91383 0.88197 0.86718 0.91853 0.91810 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.04 19.25 74.32 1.43 -3.61 16 2 C -0.23 -7.94 12.91 31.12 0.40 -7.53 16 3 C 0.19 6.98 4.27 84.57 0.36 7.34 16 4 N -0.48 -22.17 2.15 -645.42 -1.39 -23.56 16 5 C -0.33 -19.13 9.36 84.04 0.79 -18.34 16 6 H 0.04 2.87 7.91 -2.91 -0.02 2.84 16 7 C 0.01 0.61 5.26 84.92 0.45 1.06 16 8 N -0.91 -53.87 13.96 21.66 0.30 -53.57 16 9 Si 0.94 39.71 25.05 68.60 1.72 41.43 16 10 H -0.24 -9.04 6.69 99.48 0.67 -8.37 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.24 -9.53 7.11 99.48 0.71 -8.82 16 13 C 0.47 19.90 7.35 87.66 0.64 20.54 16 14 O -0.60 -30.44 14.41 -3.08 -0.04 -30.49 16 15 C -0.12 -3.39 2.51 29.85 0.07 -3.31 16 16 C -0.06 -1.58 2.42 -9.68 -0.02 -1.60 16 17 H 0.08 2.17 8.03 -2.38 -0.02 2.15 16 18 C -0.11 -2.91 5.66 31.92 0.18 -2.73 16 19 C -0.18 -3.71 6.72 30.86 0.21 -3.51 16 20 C 0.38 8.72 7.18 29.71 0.21 8.93 16 21 O -0.48 -13.74 17.99 -1.45 -0.03 -13.77 16 22 C -0.14 -2.81 3.36 -10.87 -0.04 -2.85 16 23 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 24 C -0.14 -2.44 7.95 71.98 0.57 -1.87 16 25 H 0.25 4.55 7.80 -4.42 -0.03 4.51 16 26 H 0.13 3.45 6.70 -2.39 -0.02 3.43 16 27 H 0.08 3.18 3.62 -2.39 -0.01 3.17 16 28 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.10 2.58 6.93 -2.39 -0.02 2.56 16 30 H 0.11 2.59 5.94 -2.39 -0.01 2.58 16 31 H 0.07 1.81 8.02 -2.39 -0.02 1.79 16 32 H 0.07 2.18 7.11 -2.38 -0.02 2.17 16 33 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.06 7.63 -2.39 -0.02 1.04 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.26 6.63 -2.39 -0.02 1.25 16 Total: -1.00 -74.14 305.84 6.85 -67.29 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.03 Total: 20.15 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.26 Total: -7.48 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.09 Total: -77.14 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -0.07 Total: -44.25 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 1.72 Total: 41.43 kcal Total: -74.14 6.85 -67.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281873888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.265 kcal (2) G-P(sol) polarization free energy of solvation -74.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds