Wall clock time and date at job start Sun Mar 29 2020 23:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47058 * 2 1 4 4 H 1.08998 * 109.46673 * 55.00552 * 3 2 1 5 5 C 1.50698 * 109.46809 * 175.00104 * 3 2 1 6 6 H 1.08007 * 120.00239 * 120.00514 * 5 3 2 7 7 C 1.37878 * 120.00209 * 299.99916 * 5 3 2 8 8 N 1.31516 * 120.00076 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99838 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47129 * 60.00586 * 9 7 5 11 11 H 1.48505 * 109.47177 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47594 * 300.00205 * 9 7 5 13 13 N 1.46494 * 109.47281 * 295.00187 * 3 2 1 14 14 C 1.34776 * 120.00195 * 84.99838 * 13 3 2 15 15 O 1.21615 * 119.99572 * 0.02562 * 14 13 3 16 16 C 1.47372 * 120.00281 * 179.97438 * 14 13 3 17 17 C 1.47023 * 127.19403 * 0.11228 * 16 14 13 18 18 C 1.34176 * 105.95468 * 180.29782 * 17 16 14 19 19 O 1.34216 * 109.12623 * 359.76184 * 18 17 16 20 20 C 1.33657 * 110.90865 * 359.97438 * 19 18 17 21 21 C 1.50690 * 125.80163 * 180.02562 * 20 19 18 22 22 C 1.53000 * 117.50063 * 60.02856 * 21 20 19 23 23 C 1.53002 * 60.02940 * 252.49714 * 22 21 20 24 24 H 1.08998 * 109.47040 * 299.99660 * 1 2 3 25 25 H 1.08998 * 109.47198 * 59.99934 * 1 2 3 26 26 H 1.09005 * 109.46990 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46852 * 240.00375 * 2 1 3 28 28 H 1.08993 * 109.47282 * 120.00530 * 2 1 3 29 29 H 0.96997 * 119.99787 * 179.97438 * 8 7 5 30 30 H 0.96998 * 120.00031 * 264.99985 * 13 3 2 31 31 H 1.08003 * 127.02207 * 0.08330 * 17 16 14 32 32 H 1.08000 * 125.43830 * 179.79496 * 18 17 16 33 33 H 1.09008 * 115.56062 * 205.71486 * 21 20 19 34 34 H 1.09002 * 117.49833 * 359.97438 * 22 21 20 35 35 H 1.09002 * 117.49953 * 144.99860 * 22 21 20 36 36 H 1.09000 * 117.49996 * 107.50493 * 23 22 21 37 37 H 1.08999 * 117.49664 * 252.51862 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8812 1.3816 10 1 6.4994 2.2814 1.3821 11 1 6.3979 0.2166 2.6502 12 1 6.5976 0.1473 0.2347 13 7 1.6524 2.0975 -1.2517 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6326 -0.4314 16 6 0.0454 3.3239 -2.6259 17 6 0.8522 3.4533 -3.8482 18 6 0.0916 4.1300 -4.7222 19 8 -1.0889 4.4140 -4.1501 20 6 -1.1404 3.9395 -2.9017 21 6 -2.3073 4.0687 -1.9570 22 6 -3.6394 3.4544 -2.3916 23 6 -3.4652 4.9745 -2.3832 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 3.8294 -0.0619 2.9494 30 1 2.2719 2.1232 -1.9977 31 1 1.8539 3.0827 -4.0084 32 1 0.3826 4.4023 -5.7260 33 1 -2.0595 4.0343 -0.8960 34 1 -3.6719 2.9572 -3.3611 35 1 -4.2680 3.0156 -1.6166 36 1 -3.3831 5.4770 -3.3470 37 1 -3.9789 5.5356 -1.6026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282468788.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:08 Heat of formation + Delta-G solvation = -5.832749 kcal Electronic energy + Delta-G solvation = -19894.768779 eV Core-core repulsion = 16832.435130 eV Total energy + Delta-G solvation = -3062.333650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.42585 -38.69954 -37.04701 -34.97911 -32.89235 -32.12389 -30.70355 -29.52880 -27.02444 -23.94218 -22.84579 -22.59494 -22.33674 -20.63219 -19.41093 -19.25422 -17.80427 -16.38428 -16.09013 -15.68625 -15.27802 -14.99244 -14.61812 -14.28703 -14.00465 -13.35011 -12.72643 -12.66950 -12.39554 -12.04411 -11.91515 -11.61525 -11.47834 -11.21705 -10.96810 -10.88855 -10.79466 -10.44546 -10.29651 -10.13748 -9.64218 -9.52928 -9.06632 -8.98762 -8.47067 -8.32999 -7.73730 -6.10086 -4.19312 1.59048 2.25415 2.87837 3.26822 3.32083 3.33328 3.80907 4.12588 4.18712 4.41309 4.44897 4.77386 4.94930 4.99791 5.18182 5.21456 5.45391 5.55962 5.59233 5.76998 5.97547 6.03860 6.13425 6.22481 6.43275 6.44440 6.51212 6.70906 7.09280 7.15749 7.25739 7.41093 7.50784 7.65412 7.78545 7.94019 8.21150 8.73143 8.81298 9.19861 9.48262 10.95263 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.005098 C = 0.004607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.099697 B = 5490.796572 C = 6076.714421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.699 5.699 14 C 0.574 3.426 15 O -0.549 6.549 16 C -0.221 4.221 17 C -0.186 4.186 18 C -0.048 4.048 19 O -0.181 6.181 20 C 0.089 3.911 21 C -0.079 4.079 22 C -0.161 4.161 23 C -0.175 4.175 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.021 0.979 27 H 0.030 0.970 28 H 0.099 0.901 29 H 0.265 0.735 30 H 0.387 0.613 31 H 0.157 0.843 32 H 0.205 0.795 33 H 0.154 0.846 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.592 6.241 -11.963 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.346 5.346 14 C 0.360 3.640 15 O -0.430 6.430 16 C -0.226 4.226 17 C -0.205 4.205 18 C -0.114 4.114 19 O -0.077 6.077 20 C 0.037 3.963 21 C -0.096 4.096 22 C -0.198 4.198 23 C -0.212 4.212 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.220 0.780 31 H 0.174 0.826 32 H 0.221 0.779 33 H 0.172 0.828 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.315 6.246 -11.216 15.861 hybrid contribution 1.726 -0.170 -0.411 1.782 sum -7.589 6.075 -11.627 15.155 Atomic orbital electron populations 1.21837 0.98320 0.97971 1.01311 1.21932 0.92672 0.99780 1.02209 1.18791 0.94152 0.89180 0.80935 0.93210 1.21198 0.90740 1.39029 1.06282 0.92205 1.24874 0.98545 0.94813 0.95372 1.69887 1.35177 1.37563 1.09354 0.86523 0.84935 0.78290 0.77430 1.20206 1.21131 1.20192 1.46317 1.14279 1.55553 1.18465 1.17133 0.82835 0.78669 0.85392 1.90706 1.51720 1.60739 1.39826 1.21534 0.95311 1.08699 0.97028 1.22946 1.01330 1.03517 0.92715 1.23746 0.83945 1.04075 0.99625 1.83663 1.36034 1.62981 1.25060 1.21625 0.95779 0.96129 0.82774 1.20806 0.84536 1.06305 0.97979 1.23021 0.97800 0.95689 1.03295 1.23058 1.01277 0.93407 1.03466 0.93123 0.94179 0.95956 0.95116 0.88297 0.92532 0.78029 0.82575 0.77864 0.82848 0.88677 0.87658 0.88389 0.87926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.51 37.16 0.32 -2.80 16 2 C -0.13 -3.14 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.91 2.24 -69.08 -0.15 6.75 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -24.77 11.29 55.43 0.63 -24.14 16 9 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.70 -15.09 5.02 -56.03 -0.28 -15.37 16 14 C 0.57 12.05 6.38 -12.54 -0.08 11.97 16 15 O -0.55 -12.81 12.05 5.26 0.06 -12.75 16 16 C -0.22 -3.86 6.31 -103.28 -0.65 -4.51 16 17 C -0.19 -2.57 10.60 -37.45 -0.40 -2.97 16 18 C -0.05 -0.56 12.03 29.30 0.35 -0.21 16 19 O -0.18 -2.49 10.23 7.64 0.08 -2.41 16 20 C 0.09 1.41 6.86 -34.97 -0.24 1.17 16 21 C -0.08 -1.13 5.63 -91.74 -0.52 -1.65 16 22 C -0.16 -1.88 10.23 -26.73 -0.27 -2.16 16 23 C -0.18 -1.91 10.17 -26.69 -0.27 -2.18 16 24 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 25 H 0.04 0.90 5.65 -51.93 -0.29 0.60 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 7.41 7.71 -40.82 -0.31 7.09 16 31 H 0.16 1.84 7.74 -52.48 -0.41 1.43 16 32 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.15 2.50 6.65 -51.92 -0.35 2.16 16 34 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 1.02 7.97 -51.93 -0.41 0.60 16 37 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 309.78 15.07 4.67 4.67 Total: -1.00 -30.39 309.78 -7.28 -37.68 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -4.96 Total: 9.34 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: -2.46 Total: -12.65 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.34 Total: -39.51 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.14 Total: -15.16 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.39 -7.28 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282468788.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.845 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds