Wall clock time and date at job start Sun Mar 29 2020 23:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.47081 * 2 1 4 4 H 1.09001 * 109.46856 * 55.00713 * 3 2 1 5 5 O 1.42897 * 109.47636 * 295.00528 * 3 2 1 6 6 C 1.53004 * 109.46841 * 174.99744 * 3 2 1 7 7 N 1.46502 * 109.46931 * 185.00238 * 6 3 2 8 8 C 1.34771 * 119.99664 * 180.02562 * 7 6 3 9 9 O 1.21586 * 120.00739 * 0.02562 * 8 7 6 10 10 C 1.47647 * 119.99944 * 180.02562 * 8 7 6 11 11 C 1.40016 * 119.89244 * 359.72543 * 10 8 7 12 12 C 1.36315 * 120.10095 * 179.71868 * 11 10 8 13 13 C 1.40890 * 119.89706 * 0.57590 * 12 11 10 14 14 C 1.41106 * 120.10314 * 179.67241 * 13 12 11 15 15 H 1.08008 * 119.99746 * 204.65100 * 14 13 12 16 16 C 1.40226 * 120.00291 * 24.65993 * 14 13 12 17 17 N 1.30643 * 119.99756 * 17.85490 * 16 14 13 18 18 Si 1.86800 * 120.00023 * 197.86225 * 16 14 13 19 19 H 1.48501 * 109.46970 * 89.99682 * 18 16 14 20 20 H 1.48503 * 109.46819 * 209.99639 * 18 16 14 21 21 H 1.48497 * 109.47125 * 329.99511 * 18 16 14 22 22 C 1.40885 * 119.78930 * 359.69918 * 13 12 11 23 23 C 1.36318 * 119.89350 * 0.02562 * 22 13 12 24 24 H 1.09002 * 109.46533 * 299.99349 * 1 2 3 25 25 H 1.08999 * 109.47117 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47160 * 59.99131 * 1 2 3 27 27 H 1.08998 * 109.47160 * 120.00869 * 2 1 3 28 28 H 1.09002 * 109.46533 * 240.00650 * 2 1 3 29 29 H 0.96702 * 113.99644 * 299.99599 * 5 3 2 30 30 H 1.08991 * 109.47597 * 305.00979 * 6 3 2 31 31 H 1.09005 * 109.46310 * 65.00609 * 6 3 2 32 32 H 0.96997 * 119.99955 * 0.02562 * 7 6 3 33 33 H 1.07997 * 119.94474 * 359.97438 * 11 10 8 34 34 H 1.08002 * 120.05174 * 180.24909 * 12 11 10 35 35 H 0.97005 * 119.99997 * 179.97438 * 17 16 14 36 36 H 1.08000 * 120.05653 * 179.97438 * 22 13 12 37 37 H 1.08001 * 119.94732 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6620 2.0815 -1.2209 6 6 3.5649 1.4443 0.1258 7 7 4.0434 2.8237 0.2459 8 6 5.3625 3.0711 0.3686 9 8 6.1556 2.1496 0.3791 10 6 5.8447 4.4613 0.4903 11 6 4.9300 5.5213 0.4721 12 6 5.3700 6.8060 0.5899 13 6 6.7486 7.0673 0.7178 14 6 7.2094 8.3960 0.8330 15 1 8.2180 8.6452 0.5379 16 6 6.3580 9.3928 1.3309 17 7 5.2883 9.0618 2.0040 18 14 6.7531 11.1938 1.0314 19 1 6.1202 11.6350 -0.2375 20 1 6.2283 12.0093 2.1561 21 1 8.2247 11.3687 0.9376 22 6 7.6655 5.9977 0.7297 23 6 7.2156 4.7159 0.6170 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5140 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 2.0142 1.6544 -2.0138 30 1 3.8572 0.8799 1.0112 31 1 4.0029 0.9835 -0.7597 32 1 3.4107 3.5590 0.2372 33 1 3.8739 5.3203 0.3688 34 1 4.6634 7.6228 0.5798 35 1 4.6995 9.7513 2.3487 36 1 8.7232 6.1931 0.8271 37 1 7.9177 3.8953 0.6265 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292430761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:15 Heat of formation + Delta-G solvation = -92.242805 kcal Electronic energy + Delta-G solvation = -18967.405136 eV Core-core repulsion = 15901.324465 eV Total energy + Delta-G solvation = -3066.080671 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.28169 -38.00706 -36.96050 -33.86506 -33.83207 -32.95010 -30.38436 -29.43397 -28.35624 -25.84110 -23.57071 -21.69292 -21.67306 -20.86693 -19.49049 -17.52450 -17.17554 -16.36910 -16.13427 -15.54233 -15.04575 -14.59029 -14.31024 -13.97033 -13.64930 -13.46773 -13.16855 -12.74043 -12.39962 -12.29660 -12.08150 -12.03629 -11.87693 -11.34442 -11.27796 -11.21578 -10.96858 -10.93470 -10.64248 -10.15711 -10.02809 -9.54719 -9.34365 -8.95689 -8.59792 -7.70669 -7.53192 -7.02591 -4.59393 2.24374 2.92549 2.96589 2.98879 3.05132 3.70677 3.74805 3.87844 4.29867 4.56080 4.59362 4.78721 4.83541 5.21611 5.27783 5.50343 5.57836 5.67365 5.70728 5.72341 6.01423 6.03593 6.07847 6.14603 6.32991 6.78183 6.83799 6.93496 7.06809 7.14850 7.44887 7.49593 7.66800 7.80896 7.87349 8.08238 8.26382 8.41208 8.64168 8.76597 9.08636 9.89442 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030671 B = 0.003829 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.691340 B = 7310.337814 C = 8027.279272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.153 4.153 3 C 0.094 3.906 4 H 0.104 0.896 5 O -0.557 6.557 6 C 0.092 3.908 7 N -0.737 5.737 8 C 0.571 3.429 9 O -0.579 6.579 10 C -0.285 4.285 11 C -0.062 4.062 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.259 1.259 22 C -0.240 4.240 23 C -0.022 4.022 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.375 0.625 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.401 0.599 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.286 0.714 36 H 0.098 0.902 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.466 -8.343 -2.922 12.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.191 4.191 3 C 0.035 3.965 4 H 0.122 0.878 5 O -0.362 6.362 6 C -0.033 4.033 7 N -0.391 5.391 8 C 0.366 3.634 9 O -0.462 6.462 10 C -0.289 4.289 11 C -0.081 4.081 12 C -0.198 4.198 13 C 0.125 3.875 14 C -0.471 4.471 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.395 5.395 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.259 4.259 23 C -0.041 4.041 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.222 0.778 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.237 0.763 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.429 -8.504 -2.354 12.203 hybrid contribution 0.057 0.708 -0.305 0.773 sum -8.372 -7.796 -2.659 11.745 Atomic orbital electron populations 1.21696 0.94911 1.01415 1.02514 1.22158 0.97203 0.96654 1.03112 1.22241 0.92671 0.93400 0.88229 0.87790 1.86595 1.76696 1.57363 1.15554 1.21901 0.93770 0.85359 1.02230 1.45809 1.08349 1.07572 1.77336 1.18614 0.80867 0.89732 0.74235 1.90624 1.55139 1.46926 1.53471 1.18899 0.94448 0.90282 1.25303 1.20494 0.96237 0.93326 0.98042 1.20980 0.96427 0.95151 1.07195 1.17789 0.91768 0.92605 0.85297 1.19858 0.99676 0.92334 1.35202 0.89700 1.26102 0.93902 1.02416 0.92292 1.69746 1.10848 1.36816 1.22048 0.86200 0.80351 0.80539 0.79125 1.18924 1.20028 1.18296 1.20716 0.98386 0.92232 1.14573 1.20357 0.93571 0.96010 0.94190 0.92663 0.92846 0.92017 0.90756 0.91388 0.77770 0.91329 0.91920 0.76300 0.89238 0.86184 0.90230 0.88387 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.81 37.16 0.36 -0.80 16 2 C -0.15 -1.27 5.61 -26.73 -0.15 -1.42 16 3 C 0.09 0.98 3.00 -26.73 -0.08 0.90 16 4 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 5 O -0.56 -6.16 12.82 -35.23 -0.45 -6.61 16 6 C 0.09 1.25 5.31 -4.04 -0.02 1.23 16 7 N -0.74 -12.57 5.45 -61.31 -0.33 -12.91 16 8 C 0.57 12.38 7.76 -12.42 -0.10 12.28 16 9 O -0.58 -13.99 16.32 5.29 0.09 -13.90 16 10 C -0.28 -6.64 5.89 -104.73 -0.62 -7.26 16 11 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 12 C -0.18 -4.43 8.63 -39.27 -0.34 -4.77 16 13 C 0.13 3.31 5.58 -106.80 -0.60 2.71 16 14 C -0.44 -11.10 9.04 -37.75 -0.34 -11.44 16 15 H 0.08 2.03 7.91 -52.48 -0.42 1.62 16 16 C 0.07 1.74 5.14 -17.31 -0.09 1.65 16 17 N -0.77 -18.59 10.95 55.56 0.61 -17.99 16 18 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 22 C -0.24 -5.87 9.73 -39.27 -0.38 -6.26 16 23 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.37 3.04 9.05 45.56 0.41 3.45 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.40 6.42 6.47 -40.82 -0.26 6.16 16 33 H 0.09 1.75 6.37 -52.49 -0.33 1.42 16 34 H 0.12 3.02 6.16 -52.49 -0.32 2.69 16 35 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 36 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 37 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 315.72 15.07 4.76 4.76 Total: -1.00 -29.29 315.72 -7.71 -37.00 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -4.25 Total: 13.15 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.10 Total: -15.84 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.27 Total: -30.89 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.37 Total: -20.51 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.29 -7.71 -37.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292430761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.243 kcal (2) G-P(sol) polarization free energy of solvation -29.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds