Wall clock time and date at job start Sun Mar 29 2020 23:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47342 * 2 1 4 4 H 1.08999 * 109.47140 * 54.99886 * 3 2 1 5 5 O 1.42900 * 109.46946 * 294.99838 * 3 2 1 6 6 C 1.53000 * 109.47083 * 175.00022 * 3 2 1 7 7 N 1.46501 * 109.46792 * 184.99843 * 6 3 2 8 8 C 1.34779 * 120.00081 * 179.97438 * 7 6 3 9 9 O 1.21546 * 119.99722 * 0.02562 * 8 7 6 10 10 C 1.47883 * 120.00338 * 180.02562 * 8 7 6 11 11 C 1.39925 * 120.02343 * 359.72237 * 10 8 7 12 12 C 1.38325 * 120.36024 * 179.78454 * 11 10 8 13 13 C 1.37761 * 120.41113 * 0.47238 * 12 11 10 14 14 C 1.40752 * 120.03624 * 359.78822 * 13 12 11 15 15 C 1.41436 * 120.17641 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00210 * 150.17387 * 15 14 13 17 17 C 1.39939 * 119.99891 * 330.17807 * 15 14 13 18 18 N 1.30823 * 119.99739 * 161.72844 * 17 15 14 19 19 Si 1.86803 * 119.99871 * 341.72567 * 17 15 14 20 20 H 1.48501 * 109.46835 * 95.41976 * 19 17 15 21 21 H 1.48494 * 109.46962 * 215.41496 * 19 17 15 22 22 H 1.48498 * 109.47228 * 335.41815 * 19 17 15 23 23 C 1.38989 * 120.02766 * 179.97438 * 10 8 7 24 24 H 1.09003 * 109.47125 * 300.00220 * 1 2 3 25 25 H 1.09008 * 109.47166 * 59.99984 * 1 2 3 26 26 H 1.08998 * 109.47165 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47649 * 239.99752 * 2 1 3 28 28 H 1.09000 * 109.47363 * 119.99771 * 2 1 3 29 29 H 0.96706 * 114.00246 * 299.99887 * 5 3 2 30 30 H 1.08996 * 109.47398 * 304.99797 * 6 3 2 31 31 H 1.09002 * 109.47121 * 65.00123 * 6 3 2 32 32 H 0.96999 * 120.00329 * 359.97438 * 7 6 3 33 33 H 1.08000 * 119.81740 * 0.02562 * 11 10 8 34 34 H 1.07995 * 119.79927 * 180.23925 * 12 11 10 35 35 H 1.07996 * 119.97887 * 179.76495 * 13 12 11 36 36 H 0.97003 * 119.99883 * 179.97438 * 18 17 15 37 37 H 1.08000 * 120.20168 * 359.96228 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4443 0.1257 7 7 4.0432 2.8238 0.2458 8 6 5.3623 3.0712 0.3694 9 8 6.1550 2.1499 0.3809 10 6 5.8453 4.4636 0.4911 11 6 4.9337 5.5250 0.4722 12 6 5.3774 6.8299 0.5900 13 6 6.7221 7.1004 0.7176 14 6 7.6545 6.0460 0.7332 15 6 9.0358 6.3204 0.8635 16 1 9.6859 5.6035 1.3431 17 6 9.5603 7.5207 0.3712 18 7 10.7255 7.9450 0.7879 19 14 8.5965 8.5170 -0.8810 20 1 7.8144 9.5677 -0.1814 21 1 9.5376 9.1544 -1.8366 22 1 7.6714 7.6211 -1.6204 23 6 7.2054 4.7194 0.6192 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0142 1.6542 -2.0140 30 1 3.8571 0.8800 1.0113 31 1 4.0029 0.9835 -0.7597 32 1 3.4107 3.5591 0.2362 33 1 3.8776 5.3241 0.3689 34 1 4.6656 7.6419 0.5781 35 1 7.0612 8.1220 0.8053 36 1 11.0893 8.7769 0.4463 37 1 7.9129 3.9034 0.6309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293636714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:16 Heat of formation + Delta-G solvation = -109.531574 kcal Electronic energy + Delta-G solvation = -19041.644500 eV Core-core repulsion = 15974.814132 eV Total energy + Delta-G solvation = -3066.830368 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.08020 -39.33940 -38.67153 -35.66539 -35.31110 -33.71140 -32.55085 -31.80296 -29.47335 -27.09450 -25.28576 -23.69751 -22.57530 -22.40703 -21.44095 -19.68136 -18.20996 -17.56420 -17.32361 -17.21307 -16.58926 -16.37368 -15.89756 -15.56211 -15.29452 -14.94916 -14.58561 -14.42774 -14.38413 -13.85454 -13.49090 -13.30850 -12.99168 -12.86381 -12.84669 -12.68589 -12.31882 -11.82633 -11.79668 -11.72679 -11.58273 -11.26827 -11.07520 -10.74018 -10.21029 -9.64020 -9.56348 -8.92486 -6.56450 0.16554 0.73233 1.25236 1.41239 1.48270 1.93684 2.12136 2.15896 2.64258 3.44201 3.47446 3.64769 3.86334 4.02981 4.10485 4.25373 4.37615 4.40673 4.54036 4.60886 4.69375 4.86528 4.87956 4.90065 4.91979 5.14020 5.15078 5.29030 5.39784 5.41644 5.43893 5.64041 5.70857 5.83527 6.09487 6.28847 6.54776 6.64945 6.73224 6.79577 7.21416 8.16622 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043049 B = 0.003881 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.268265 B = 7212.906431 C = 7584.690007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.109 0.891 5 O -0.568 6.568 6 C 0.085 3.915 7 N -0.706 5.706 8 C 0.560 3.440 9 O -0.588 6.588 10 C -0.115 4.115 11 C -0.182 4.182 12 C -0.082 4.082 13 C -0.225 4.225 14 C 0.066 3.934 15 C -0.489 4.489 16 H 0.050 0.950 17 C 0.045 3.955 18 N -0.849 5.849 19 Si 0.968 3.032 20 H -0.246 1.246 21 H -0.277 1.277 22 H -0.252 1.252 23 C -0.167 4.167 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.388 0.612 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.415 0.585 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.107 0.893 36 H 0.295 0.705 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.911 -8.168 -3.807 22.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.188 4.188 3 C 0.048 3.952 4 H 0.127 0.873 5 O -0.376 6.376 6 C -0.039 4.039 7 N -0.359 5.359 8 C 0.349 3.651 9 O -0.470 6.470 10 C -0.118 4.118 11 C -0.202 4.202 12 C -0.100 4.100 13 C -0.245 4.245 14 C 0.063 3.937 15 C -0.518 4.518 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.475 5.475 19 Si 0.790 3.210 20 H -0.171 1.171 21 H -0.203 1.203 22 H -0.176 1.176 23 C -0.187 4.187 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.238 0.762 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.253 0.747 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.442 -8.300 -3.360 22.317 hybrid contribution 0.920 0.139 -0.459 1.038 sum -19.521 -8.161 -3.819 21.501 Atomic orbital electron populations 1.21677 0.94420 1.02040 1.02243 1.22128 0.97482 0.95261 1.03919 1.22146 0.89790 0.94861 0.88395 0.87275 1.86565 1.76830 1.57942 1.16231 1.22274 0.96325 0.82701 1.02619 1.45685 1.06268 1.10115 1.73798 1.18611 0.82785 0.88573 0.75131 1.90683 1.56476 1.47169 1.52654 1.19719 0.94132 0.92574 1.05347 1.20997 0.98641 0.91412 1.09138 1.21045 0.94617 0.97192 0.97152 1.21399 0.94198 0.97822 1.11047 1.17776 0.93359 0.91981 0.90551 1.19462 0.93445 1.03120 1.35814 0.93191 1.26905 0.95853 0.96949 0.97210 1.69723 1.19153 1.21251 1.37369 0.85463 0.78493 0.78739 0.78343 1.17069 1.20347 1.17571 1.21201 0.94454 0.95948 1.07136 0.92677 0.92481 0.91928 0.90540 0.90201 0.76246 0.91069 0.91571 0.74672 0.83568 0.83486 0.87514 0.89404 0.89262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.81 71.98 0.71 -0.85 16 2 C -0.15 -1.64 5.61 30.59 0.17 -1.47 16 3 C 0.11 1.53 3.00 30.60 0.09 1.63 16 4 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 5 O -0.57 -8.68 12.82 -148.98 -1.91 -10.59 16 6 C 0.08 1.76 5.31 86.38 0.46 2.22 16 7 N -0.71 -18.83 5.45 -465.94 -2.54 -21.37 16 8 C 0.56 21.45 7.77 86.80 0.67 22.12 16 9 O -0.59 -26.94 16.33 -3.86 -0.06 -27.00 16 10 C -0.11 -4.80 5.87 -20.13 -0.12 -4.92 16 11 C -0.18 -6.33 9.55 22.70 0.22 -6.11 16 12 C -0.08 -3.01 10.01 22.18 0.22 -2.78 16 13 C -0.23 -10.19 7.17 22.77 0.16 -10.03 16 14 C 0.07 3.44 5.10 -21.32 -0.11 3.33 16 15 C -0.49 -28.38 9.57 23.47 0.22 -28.16 16 16 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 17 C 0.05 2.46 5.40 85.26 0.46 2.92 16 18 N -0.85 -47.17 13.93 21.82 0.30 -46.86 16 19 Si 0.97 41.96 24.52 68.60 1.68 43.64 16 20 H -0.25 -9.68 6.71 99.48 0.67 -9.01 16 21 H -0.28 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.25 -11.14 6.86 99.48 0.68 -10.46 16 23 C -0.17 -8.42 9.34 23.01 0.21 -8.21 16 24 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.67 7.82 -2.38 -0.02 0.65 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.39 3.90 9.05 -74.05 -0.67 3.23 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.41 9.17 6.49 -92.71 -0.60 8.57 16 33 H 0.15 3.67 6.38 -2.91 -0.02 3.66 16 34 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.11 4.73 4.72 -2.91 -0.01 4.71 16 36 H 0.30 14.60 8.30 -92.71 -0.77 13.83 16 37 H 0.09 4.83 7.64 -2.91 -0.02 4.81 16 Total: -1.00 -69.42 310.74 0.61 -68.81 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.24 Total: 23.68 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 3.38 Total: -30.31 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -2.24 Total: -68.23 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -1.97 Total: -37.59 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.68 Total: 43.64 kcal Total: -69.42 0.61 -68.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293636714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.719 kcal (2) G-P(sol) polarization free energy of solvation -69.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds