Wall clock time and date at job start Sun Mar 29 2020 23:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.50695 * 120.00352 * 2 1 4 4 C 1.32996 * 119.99818 * 180.02562 * 2 1 3 5 5 C 1.47100 * 120.00062 * 5.62954 * 4 2 1 6 6 O 1.21612 * 120.00322 * 354.79587 * 5 4 2 7 7 N 1.34785 * 120.00083 * 174.79188 * 5 4 2 8 8 C 1.46505 * 119.99506 * 359.97438 * 7 5 4 9 9 C 1.50698 * 109.47169 * 270.00089 * 8 7 5 10 10 H 1.07993 * 120.00295 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99680 * 180.02562 * 9 8 7 12 12 N 1.31522 * 120.00164 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99837 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47274 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.46794 * 120.00288 * 13 11 9 16 16 H 1.48498 * 109.46911 * 239.99895 * 13 11 9 17 17 C 1.46491 * 120.00112 * 180.02562 * 7 5 4 18 18 C 1.50701 * 109.47326 * 90.00166 * 17 7 5 19 19 C 1.34508 * 125.79227 * 90.00005 * 18 17 7 20 20 C 1.41389 * 106.84185 * 180.02562 * 19 18 17 21 21 C 1.34518 * 106.83787 * 359.97438 * 20 19 18 22 22 O 1.34300 * 108.42005 * 359.74025 * 21 20 19 23 23 H 1.08997 * 109.47150 * 238.18018 * 1 2 3 24 24 H 1.08996 * 109.46943 * 358.17953 * 1 2 3 25 25 H 1.09004 * 109.46735 * 118.18224 * 1 2 3 26 26 H 1.08992 * 109.47188 * 270.00332 * 3 2 1 27 27 H 1.09012 * 109.46653 * 29.99757 * 3 2 1 28 28 H 1.08998 * 109.47249 * 149.99519 * 3 2 1 29 29 H 1.08001 * 119.99787 * 185.64301 * 4 2 1 30 30 H 1.09000 * 109.47274 * 30.00511 * 8 7 5 31 31 H 1.08999 * 109.46301 * 150.00214 * 8 7 5 32 32 H 0.96992 * 120.00250 * 180.02562 * 12 11 9 33 33 H 1.09004 * 109.46929 * 209.99979 * 17 7 5 34 34 H 1.08998 * 109.47379 * 329.99507 * 17 7 5 35 35 H 1.08001 * 126.58320 * 0.03065 * 19 18 17 36 36 H 1.07998 * 126.57881 * 179.97438 * 20 19 18 37 37 H 1.08002 * 125.79001 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1720 -1.1518 -0.0005 5 6 1.4418 -2.4226 -0.1260 6 8 0.2257 -2.4269 -0.1341 7 7 2.1205 -3.5822 -0.2323 8 6 3.5855 -3.5769 -0.2232 9 6 4.0961 -3.4407 -1.6345 10 1 3.3991 -3.3652 -2.4560 11 6 5.4531 -3.4124 -1.8769 12 7 6.3019 -3.5049 -0.8766 13 14 6.0860 -3.2429 -3.6263 14 1 4.9365 -3.1571 -4.5624 15 1 6.9079 -2.0112 -3.7380 16 1 6.9169 -4.4251 -3.9688 17 6 1.3933 -4.8477 -0.3578 18 6 1.1533 -5.1467 -1.8152 19 6 1.9751 -5.8425 -2.6213 20 6 1.3638 -5.8802 -3.8956 21 6 0.2047 -5.2056 -3.7919 22 8 0.0796 -4.7688 -2.5281 23 1 -0.3633 -0.5418 0.8732 24 1 -0.3633 1.0271 0.0326 25 1 -0.3633 -0.4854 -0.9059 26 1 2.4422 1.6197 -1.0276 27 1 1.6714 2.0647 0.5139 28 1 3.2129 1.1747 0.5139 29 1 3.2481 -1.1541 0.0915 30 1 3.9421 -2.7382 0.3748 31 1 3.9494 -4.5102 0.2064 32 1 7.2565 -3.4847 -1.0470 33 1 1.9822 -5.6507 0.0856 34 1 0.4371 -4.7702 0.1595 35 1 2.9205 -6.2873 -2.3476 36 1 1.7529 -6.3588 -4.7822 37 1 -0.5070 -5.0465 -4.5885 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299544592.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:51:33 Heat of formation + Delta-G solvation = -21.970545 kcal Electronic energy + Delta-G solvation = -20251.161274 eV Core-core repulsion = 17188.127838 eV Total energy + Delta-G solvation = -3063.033437 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.37620 -40.79286 -37.23038 -36.11124 -34.58648 -33.80083 -31.92333 -29.20280 -28.99148 -28.55169 -26.42815 -24.85855 -22.56354 -21.96047 -20.88579 -19.02393 -18.58326 -18.21496 -18.00820 -17.06431 -16.49577 -16.27046 -15.98883 -15.30960 -14.93071 -14.68493 -14.44255 -14.16928 -13.87571 -13.66363 -13.53390 -13.42077 -13.28567 -13.15452 -12.87397 -12.78104 -12.58307 -12.45459 -12.30861 -11.98284 -11.69063 -10.73604 -10.64860 -10.43081 -10.04796 -9.55052 -9.24431 -8.17534 -6.27582 0.51566 0.83764 1.36203 1.40483 1.50905 1.75141 2.15898 2.35445 2.52400 2.58719 3.13361 3.77561 3.93180 4.02055 4.13429 4.23110 4.35428 4.46263 4.52937 4.65958 4.73015 4.85149 4.88040 4.96048 4.98805 5.07362 5.12081 5.19606 5.26668 5.28391 5.60111 5.67197 5.70014 5.74731 5.86097 6.10675 6.31530 6.57822 6.85742 7.33734 7.45018 8.88614 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.011954 B = 0.009909 C = 0.006477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.727516 B = 2825.168261 C = 4321.711528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.042 4.042 3 C -0.119 4.119 4 C -0.241 4.241 5 C 0.540 3.460 6 O -0.581 6.581 7 N -0.596 5.596 8 C 0.252 3.748 9 C -0.520 4.520 10 H 0.043 0.957 11 C 0.025 3.975 12 N -0.920 5.920 13 Si 0.945 3.055 14 H -0.278 1.278 15 H -0.278 1.278 16 H -0.278 1.278 17 C 0.197 3.803 18 C -0.038 4.038 19 C -0.192 4.192 20 C -0.229 4.229 21 C -0.049 4.049 22 O -0.192 6.192 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.033 0.967 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 2.299 -1.129 8.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.044 4.044 3 C -0.175 4.175 4 C -0.261 4.261 5 C 0.333 3.667 6 O -0.465 6.465 7 N -0.325 5.325 8 C 0.132 3.868 9 C -0.559 4.559 10 H 0.061 0.939 11 C -0.175 4.175 12 N -0.560 5.560 13 Si 0.772 3.228 14 H -0.203 1.203 15 H -0.204 1.204 16 H -0.203 1.203 17 C 0.074 3.926 18 C -0.089 4.089 19 C -0.213 4.213 20 C -0.248 4.248 21 C -0.117 4.117 22 O -0.088 6.088 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.108 0.892 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.738 2.430 -0.940 9.118 hybrid contribution 1.113 -0.414 -1.150 1.653 sum -7.625 2.016 -2.090 8.159 Atomic orbital electron populations 1.20894 0.90762 1.01857 1.02411 1.22890 0.97022 0.95135 0.89343 1.21023 1.00055 0.92856 1.03547 1.22566 1.00592 0.91981 1.10992 1.18913 0.86720 0.85287 0.75765 1.90656 1.14402 1.87716 1.53761 1.48179 1.08720 1.05379 1.70253 1.19194 0.73580 0.97606 0.96451 1.21520 0.91396 1.49775 0.93179 0.93861 1.25479 0.96928 0.94992 1.00063 1.69997 1.02751 1.51190 1.32026 0.85696 0.78079 0.77915 0.81155 1.20324 1.20387 1.20323 1.19780 0.98377 0.87356 0.87051 1.23018 0.87769 1.01569 0.96531 1.21719 1.00909 1.04542 0.94083 1.22115 0.97078 1.06437 0.99169 1.24734 1.01231 1.00556 0.85159 1.84043 1.40781 1.62315 1.21681 0.91558 0.90089 0.92498 0.89747 0.88701 0.91126 0.85938 0.94940 0.95530 0.92493 0.86220 0.89178 0.84012 0.81678 0.74749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.15 8.34 71.24 0.59 -2.55 16 2 C -0.04 -1.36 6.11 -17.62 -0.11 -1.46 16 3 C -0.12 -2.83 9.99 71.23 0.71 -2.12 16 4 C -0.24 -9.59 8.84 23.43 0.21 -9.38 16 5 C 0.54 23.82 7.59 86.57 0.66 24.47 16 6 O -0.58 -26.51 12.68 -4.07 -0.05 -26.57 16 7 N -0.60 -26.14 2.44 -834.79 -2.04 -28.18 16 8 C 0.25 12.15 4.95 85.63 0.42 12.57 16 9 C -0.52 -27.27 9.13 25.60 0.23 -27.04 16 10 H 0.04 2.42 7.65 -2.91 -0.02 2.40 16 11 C 0.03 1.33 5.46 84.65 0.46 1.79 16 12 N -0.92 -50.35 13.29 21.45 0.28 -50.07 16 13 Si 0.94 42.79 29.54 68.60 2.03 44.82 16 14 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 15 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.20 7.66 5.98 85.64 0.51 8.17 16 18 C -0.04 -1.53 6.90 24.83 0.17 -1.36 16 19 C -0.19 -7.46 10.39 22.19 0.23 -7.23 16 20 C -0.23 -7.62 10.91 22.19 0.24 -7.38 16 21 C -0.05 -1.57 12.09 66.97 0.81 -0.76 16 22 O -0.19 -7.60 10.65 -2.49 -0.03 -7.63 16 23 H 0.07 2.18 7.32 -2.39 -0.02 2.17 16 24 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 25 H 0.06 2.02 7.14 -2.38 -0.02 2.00 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 1.70 8.03 -2.38 -0.02 1.68 16 28 H 0.07 1.69 8.06 -2.39 -0.02 1.68 16 29 H 0.12 5.16 6.16 -2.91 -0.02 5.15 16 30 H 0.03 1.63 6.03 -2.39 -0.01 1.62 16 31 H 0.03 1.32 7.89 -2.39 -0.02 1.30 16 32 H 0.27 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.12 4.07 7.89 -2.39 -0.02 4.05 16 34 H 0.09 3.37 7.42 -2.39 -0.02 3.35 16 35 H 0.14 5.55 8.06 -2.91 -0.02 5.53 16 36 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.24 4.99 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -64.37 318.75 6.40 -57.97 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 1.06 Total: 21.93 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 5.15 Total: -12.27 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -1.75 Total: -78.25 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.08 Total: -34.19 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -64.37 6.40 -57.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299544592.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.996 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds