Wall clock time and date at job start Mon Mar 30 2020 00:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47319 * 2 1 4 4 O 1.42901 * 109.47318 * 120.00132 * 2 1 3 5 5 C 1.35900 * 116.99695 * 155.20381 * 4 2 1 6 6 C 1.38747 * 120.05958 * 5.20374 * 5 4 2 7 7 C 1.38123 * 119.94285 * 179.69452 * 6 5 4 8 8 C 1.38291 * 120.05911 * 0.60106 * 7 6 5 9 9 C 1.38244 * 120.10654 * 359.67343 * 8 7 6 10 10 C 1.50700 * 119.97087 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.46939 * 269.97849 * 10 9 8 12 12 O 1.21289 * 120.00433 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99764 * 180.02562 * 11 10 9 14 14 C 1.37096 * 119.99673 * 180.02562 * 13 11 10 15 15 H 1.07994 * 120.00526 * 359.97438 * 14 13 11 16 16 C 1.38956 * 119.99514 * 179.97438 * 14 13 11 17 17 N 1.31406 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99743 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47336 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47273 * 119.99458 * 18 16 14 21 21 H 1.48496 * 109.47355 * 239.99658 * 18 16 14 22 22 C 1.38164 * 120.05727 * 0.02562 * 9 8 7 23 23 H 1.08997 * 109.47314 * 299.99693 * 1 2 3 24 24 H 1.09003 * 109.46941 * 60.00344 * 1 2 3 25 25 H 1.09006 * 109.46966 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.47014 * 240.00523 * 2 1 3 27 27 H 1.08997 * 109.46677 * 59.99917 * 3 2 1 28 28 H 1.08992 * 109.47387 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.46682 * 300.00476 * 3 2 1 30 30 H 1.07998 * 120.03196 * 359.96964 * 6 5 4 31 31 H 1.08004 * 119.97558 * 180.29571 * 7 6 5 32 32 H 1.07998 * 119.94736 * 179.69715 * 8 7 6 33 33 H 1.08998 * 109.47125 * 29.97866 * 10 9 8 34 34 H 1.09000 * 109.46975 * 149.97458 * 10 9 8 35 35 H 0.96997 * 119.99989 * 359.97438 * 13 11 10 36 36 H 0.97001 * 120.00084 * 180.02562 * 17 16 14 37 37 H 1.07998 * 120.03094 * 180.02562 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2484 -1.2210 1.0992 6 6 4.0361 -1.0204 -0.0253 7 6 5.3005 -1.5726 -0.0888 8 6 5.7769 -2.3353 0.9618 9 6 4.9918 -2.5414 2.0809 10 6 5.5142 -3.3725 3.2243 11 6 5.1412 -4.8164 3.0073 12 8 4.5125 -5.1388 2.0214 13 7 5.5052 -5.7493 3.9092 14 6 5.1663 -7.0629 3.7115 15 1 4.6072 -7.3501 2.8332 16 6 5.5421 -8.0249 4.6412 17 7 6.2227 -7.6756 5.7096 18 14 5.0797 -9.8146 4.3721 19 1 4.3193 -9.9441 3.1031 20 1 6.3128 -10.6386 4.2970 21 1 4.2388 -10.2840 5.5025 22 6 3.7287 -1.9860 2.1520 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 3.6626 -0.4293 -0.8484 31 1 5.9159 -1.4128 -0.9619 32 1 6.7639 -2.7702 0.9082 33 1 6.5992 -3.2811 3.2739 34 1 5.0769 -3.0207 4.1587 35 1 6.0076 -5.4915 4.6979 36 1 6.4854 -8.3472 6.3583 37 1 3.1159 -2.1469 3.0266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299724181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:56 Heat of formation + Delta-G solvation = -84.353759 kcal Electronic energy + Delta-G solvation = -19072.911721 eV Core-core repulsion = 16007.173145 eV Total energy + Delta-G solvation = -3065.738576 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.30678 -40.18317 -38.56115 -35.98875 -34.18649 -33.59808 -33.09922 -30.74813 -29.03160 -28.07421 -26.53299 -23.79071 -23.46867 -21.71632 -20.78068 -19.92786 -18.79637 -17.74019 -17.12282 -16.93485 -16.57149 -16.30966 -15.90238 -15.69808 -15.10684 -14.85477 -14.53340 -14.38235 -13.88482 -13.64385 -13.50845 -13.23681 -13.09678 -13.00817 -12.73581 -12.66556 -12.42485 -12.33907 -12.14268 -12.05363 -11.65457 -11.52632 -11.49384 -10.44506 -10.02526 -9.71676 -9.07500 -8.47423 -5.96455 0.39411 0.55324 1.35901 1.41118 1.55562 2.03991 2.24735 2.30798 2.79050 3.19600 3.40358 3.78707 3.83098 3.93932 4.03254 4.09078 4.21256 4.31037 4.41638 4.52401 4.56185 4.67378 4.70882 4.75322 4.83333 4.86569 4.97275 5.13177 5.19524 5.27703 5.39381 5.40715 5.50805 5.71716 5.87586 6.00456 6.55672 6.58306 7.11275 7.54561 8.10371 8.70110 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032964 B = 0.003767 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.207205 B = 7430.961886 C = 7808.471868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.063 3.937 3 C -0.174 4.174 4 O -0.331 6.331 5 C 0.121 3.879 6 C -0.215 4.215 7 C -0.079 4.079 8 C -0.160 4.160 9 C -0.025 4.025 10 C -0.088 4.088 11 C 0.443 3.557 12 O -0.629 6.629 13 N -0.572 5.572 14 C -0.335 4.335 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.919 5.919 18 Si 0.993 3.007 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.270 1.270 22 C -0.166 4.166 23 H 0.065 0.935 24 H 0.103 0.897 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.398 0.602 36 H 0.278 0.722 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.239 17.497 -9.412 20.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 C -0.231 4.231 4 O -0.246 6.246 5 C 0.076 3.924 6 C -0.233 4.233 7 C -0.097 4.097 8 C -0.178 4.178 9 C -0.026 4.026 10 C -0.128 4.128 11 C 0.231 3.769 12 O -0.516 6.516 13 N -0.209 5.209 14 C -0.464 4.464 15 H 0.095 0.905 16 C -0.212 4.212 17 N -0.560 5.560 18 Si 0.816 3.184 19 H -0.199 1.199 20 H -0.194 1.194 21 H -0.195 1.195 22 C -0.185 4.185 23 H 0.084 0.916 24 H 0.122 0.878 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.114 0.886 30 H 0.170 0.830 31 H 0.172 0.828 32 H 0.147 0.853 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.728 17.180 -9.736 20.305 hybrid contribution 0.127 -0.977 0.506 1.108 sum -4.601 16.203 -9.231 19.207 Atomic orbital electron populations 1.21892 0.91399 1.02922 1.04162 1.22772 0.96376 0.93352 0.86707 1.22350 1.01871 0.94823 1.04037 1.86096 1.29150 1.68759 1.40627 1.18986 0.85081 0.93620 0.94724 1.21467 0.96240 1.06934 0.98684 1.21221 0.95189 0.94963 0.98343 1.21147 1.01218 1.01410 0.94043 1.19250 0.93349 0.94341 0.95640 1.20567 1.03882 0.89785 0.98521 1.20728 0.83701 0.88272 0.84192 1.90509 1.45883 1.83150 1.32056 1.41951 1.50014 1.06721 1.22171 1.19707 1.34663 0.84022 1.08051 0.90487 1.26043 0.96245 1.04226 0.94687 1.69674 1.38364 1.36600 1.11386 0.84877 0.78326 0.76905 0.78257 1.19921 1.19388 1.19536 1.20327 0.96554 1.01764 0.99816 0.91631 0.87833 0.92775 0.90499 0.91872 0.92299 0.88555 0.82980 0.82809 0.85279 0.86449 0.87324 0.76803 0.91232 0.86588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.56 71.98 0.69 -1.66 16 2 C 0.06 1.25 2.85 30.60 0.09 1.34 16 3 C -0.17 -2.62 9.17 71.98 0.66 -1.96 16 4 O -0.33 -9.67 9.80 -92.42 -0.91 -10.57 16 5 C 0.12 3.84 6.60 22.51 0.15 3.99 16 6 C -0.21 -5.71 8.24 22.36 0.18 -5.52 16 7 C -0.08 -2.11 10.04 22.25 0.22 -1.89 16 8 C -0.16 -5.09 9.70 22.28 0.22 -4.87 16 9 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 10 C -0.09 -3.18 5.83 29.10 0.17 -3.01 16 11 C 0.44 21.90 7.78 87.66 0.68 22.58 16 12 O -0.63 -36.39 15.61 -3.06 -0.05 -36.44 16 13 N -0.57 -30.12 5.29 -306.98 -1.62 -31.74 16 14 C -0.33 -19.47 9.68 84.04 0.81 -18.65 16 15 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 16 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 17 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 18 Si 0.99 43.59 29.55 68.60 2.03 45.61 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 22 C -0.17 -5.97 9.64 22.37 0.22 -5.75 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 26 H 0.08 1.43 6.31 -2.38 -0.02 1.42 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 0.96 6.91 -2.39 -0.02 0.94 16 29 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.15 3.03 5.43 -2.91 -0.02 3.02 16 31 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.12 3.57 8.08 -2.39 -0.02 3.56 16 34 H 0.11 3.48 8.08 -2.39 -0.02 3.46 16 35 H 0.40 19.75 7.90 -92.71 -0.73 19.02 16 36 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 37 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -71.55 316.64 4.55 -67.01 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.34 Total: 32.65 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 4.47 Total: -16.61 kcal Atomic # 7 Polarization: -80.31 SS G_CDS: -1.34 Total: -81.65 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -0.95 Total: -47.01 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.55 4.55 -67.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299724181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.348 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds