Wall clock time and date at job start Mon Mar 30 2020 00:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.42899 * 113.99778 * 150.00013 * 4 2 1 6 6 C 1.50699 * 109.46785 * 179.97438 * 5 4 2 7 7 C 1.38377 * 119.84666 * 269.72228 * 6 5 4 8 8 C 1.37936 * 120.15076 * 179.72623 * 7 6 5 9 9 C 1.39647 * 119.84763 * 0.57063 * 8 7 6 10 10 C 1.47727 * 120.15332 * 179.68158 * 9 8 7 11 11 O 1.21595 * 119.99629 * 180.02562 * 10 9 8 12 12 N 1.34772 * 119.99874 * 0.02678 * 10 9 8 13 13 C 1.36870 * 119.99972 * 180.02562 * 12 10 9 14 14 H 1.07998 * 119.99863 * 359.97438 * 13 12 10 15 15 C 1.39048 * 120.00004 * 179.97438 * 13 12 10 16 16 N 1.31356 * 120.00185 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99703 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47697 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.46905 * 120.00378 * 17 15 13 20 20 H 1.48504 * 109.47155 * 239.99523 * 17 15 13 21 21 C 1.39648 * 119.69552 * 359.70652 * 9 8 7 22 22 C 1.37935 * 119.84767 * 359.97438 * 21 9 8 23 23 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 24 24 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 25 25 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 27 27 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 28 28 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 29 29 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47171 * 299.99768 * 5 4 2 31 31 H 1.08997 * 109.47442 * 59.99964 * 5 4 2 32 32 H 1.08001 * 119.92252 * 0.02562 * 7 6 5 33 33 H 1.07999 * 120.08133 * 180.25526 * 8 7 6 34 34 H 0.96996 * 120.00379 * 359.97438 * 12 10 9 35 35 H 0.97001 * 120.00300 * 179.97438 * 16 15 13 36 36 H 1.08006 * 120.07853 * 179.97438 * 21 9 8 37 37 H 1.08000 * 119.92508 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2660 -1.3245 0.9887 6 6 3.6698 -1.9979 2.2750 7 6 4.4250 -1.3071 3.2063 8 6 4.7933 -1.9154 4.3882 9 6 4.4124 -3.2354 4.6387 10 6 4.8091 -3.8958 5.8992 11 8 4.4762 -5.0454 6.1141 12 7 5.5399 -3.2240 6.8108 13 6 5.9079 -3.8360 7.9784 14 1 5.6123 -4.8571 8.1694 15 6 6.6623 -3.1432 8.9188 16 7 7.0223 -1.9015 8.6863 17 14 7.1640 -3.9783 10.5127 18 1 6.6363 -5.3662 10.5318 19 1 8.6455 -4.0099 10.6099 20 1 6.6085 -3.2222 11.6638 21 6 3.6551 -3.9284 3.6919 22 6 3.2881 -3.3057 2.5171 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.6768 1.9563 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 3.1809 -2.0707 0.1987 31 1 4.0200 -0.5875 0.7126 32 1 4.7226 -0.2878 3.0094 33 1 5.3792 -1.3739 5.1161 34 1 5.8057 -2.3071 6.6392 35 1 7.5483 -1.4180 9.3424 36 1 3.3575 -4.9497 3.8790 37 1 2.7028 -3.8407 1.7838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299724720.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:27 Heat of formation + Delta-G solvation = -71.877488 kcal Electronic energy + Delta-G solvation = -18780.486356 eV Core-core repulsion = 15715.288792 eV Total energy + Delta-G solvation = -3065.197564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.46501 -38.42990 -37.24163 -34.10121 -33.25576 -31.65002 -30.87177 -30.42471 -27.50151 -26.53096 -24.73848 -22.20060 -21.80167 -21.48390 -19.41566 -18.20828 -17.01296 -16.66256 -15.81567 -15.52427 -14.95165 -14.48952 -14.37546 -13.88584 -13.72504 -13.61421 -13.32532 -13.10431 -12.84548 -12.58136 -12.39612 -12.15829 -11.92964 -11.66051 -11.59171 -11.17068 -11.05995 -10.84626 -10.68714 -10.38820 -10.28393 -9.68907 -9.64961 -8.59517 -8.50271 -8.39986 -8.08310 -6.57126 -3.89725 1.29343 1.78374 3.11036 3.21543 3.29200 3.43527 3.94818 4.08558 4.53741 4.63194 4.78646 4.88319 4.94243 4.98910 5.05359 5.20575 5.28836 5.34613 5.36739 5.38606 5.55079 5.59126 5.61360 5.80715 5.90138 5.95098 5.99251 6.09268 6.27104 6.37712 6.75997 6.82469 6.95258 7.14426 7.29595 7.42278 7.95915 8.49859 9.05363 9.41598 9.97438 10.59860 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.038422 B = 0.003463 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.581495 B = 8084.686019 C = 8529.108140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.375 6.375 5 C 0.108 3.892 6 C -0.100 4.100 7 C -0.102 4.102 8 C -0.108 4.108 9 C -0.085 4.085 10 C 0.463 3.537 11 O -0.598 6.598 12 N -0.542 5.542 13 C -0.294 4.294 14 H 0.109 0.891 15 C 0.023 3.977 16 N -0.889 5.889 17 Si 0.934 3.066 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.082 4.082 22 C -0.106 4.106 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.394 0.606 35 H 0.275 0.725 36 H 0.133 0.867 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 6.776 -16.712 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.233 4.233 4 O -0.294 6.294 5 C 0.032 3.968 6 C -0.100 4.100 7 C -0.120 4.120 8 C -0.127 4.127 9 C -0.089 4.089 10 C 0.251 3.749 11 O -0.485 6.485 12 N -0.176 5.176 13 C -0.424 4.424 14 H 0.127 0.873 15 C -0.180 4.180 16 N -0.529 5.529 17 Si 0.761 3.239 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.101 4.101 22 C -0.124 4.124 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.229 0.771 35 H 0.085 0.915 36 H 0.150 0.850 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.187 6.152 -16.225 18.781 hybrid contribution 0.655 0.374 0.478 0.893 sum -6.532 6.526 -15.746 18.254 Atomic orbital electron populations 1.21861 0.93713 1.02731 1.02396 1.22077 0.95011 0.92461 0.88381 1.22308 1.01584 0.96911 1.02512 1.88066 1.36373 1.69805 1.35205 1.21317 0.85778 0.94965 0.94741 1.19532 1.00011 0.94465 0.96038 1.20860 0.98378 0.99258 0.93473 1.21408 0.99671 0.94458 0.97174 1.20416 0.98382 0.94102 0.95955 1.17767 0.85232 0.87261 0.84597 1.90592 1.60527 1.17968 1.79408 1.41918 1.44684 1.14895 1.16109 1.19905 1.29579 0.99592 0.93293 0.87348 1.25397 0.96782 0.95678 1.00187 1.69594 1.36814 1.09734 1.36738 0.85717 0.78258 0.79534 0.80406 1.18956 1.20509 1.20502 1.21196 0.96282 1.00335 0.92331 1.20887 0.99759 0.94405 0.97329 0.91724 0.91456 0.91979 0.92398 0.91849 0.91669 0.92466 0.92724 0.92731 0.86141 0.85389 0.77099 0.91463 0.84962 0.86169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.56 37.16 0.36 -0.87 16 2 C 0.08 0.73 3.34 -26.73 -0.09 0.64 16 3 C -0.18 -1.43 9.53 37.16 0.35 -1.08 16 4 O -0.37 -4.75 9.97 -35.23 -0.35 -5.10 16 5 C 0.11 1.26 5.87 36.01 0.21 1.47 16 6 C -0.10 -1.46 5.52 -104.52 -0.58 -2.03 16 7 C -0.10 -1.56 9.68 -39.64 -0.38 -1.95 16 8 C -0.11 -1.95 9.54 -39.17 -0.37 -2.32 16 9 C -0.08 -1.77 5.87 -104.97 -0.62 -2.38 16 10 C 0.46 11.81 7.72 -12.39 -0.10 11.72 16 11 O -0.60 -17.12 15.92 5.28 0.08 -17.03 16 12 N -0.54 -14.23 5.23 -11.87 -0.06 -14.29 16 13 C -0.29 -8.24 9.68 -15.00 -0.15 -8.39 16 14 H 0.11 3.17 7.15 -52.49 -0.38 2.79 16 15 C 0.02 0.61 5.50 -17.45 -0.10 0.51 16 16 N -0.89 -23.79 13.05 55.50 0.72 -23.07 16 17 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 21 C -0.08 -1.51 9.60 -39.17 -0.38 -1.89 16 22 C -0.11 -1.62 9.68 -39.64 -0.38 -2.00 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.46 7.79 -51.93 -0.40 0.06 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.46 7.87 -51.93 -0.41 0.06 16 30 H 0.05 0.55 8.03 -51.93 -0.42 0.13 16 31 H 0.05 0.56 7.81 -51.93 -0.41 0.15 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.13 2.27 6.41 -52.49 -0.34 1.94 16 34 H 0.39 9.78 5.93 -40.82 -0.24 9.53 16 35 H 0.28 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 2.46 7.65 -52.48 -0.40 2.06 16 37 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 319.89 15.07 4.82 4.82 Total: -1.00 -31.41 319.89 -7.11 -38.52 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -5.08 Total: 9.06 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.22 Total: -8.58 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.66 Total: -37.35 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.27 Total: -22.13 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.41 -7.11 -38.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299724720.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.356 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds