Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46896 * 2 1 4 4 O 1.42902 * 109.47530 * 119.99776 * 2 1 3 5 5 C 1.42904 * 113.99522 * 90.00011 * 4 2 1 6 6 C 1.50693 * 109.46729 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00524 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.39939 * 119.99812 * 174.88959 * 8 6 5 10 10 C 1.39289 * 119.94398 * 145.78305 * 9 8 6 11 11 C 1.38488 * 120.42937 * 180.02562 * 10 9 8 12 12 C 1.37680 * 120.32187 * 359.97438 * 11 10 9 13 13 C 1.40743 * 119.88597 * 0.03003 * 12 11 10 14 14 C 1.41408 * 120.21375 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00248 * 205.17360 * 14 13 12 16 16 C 1.39933 * 119.99579 * 25.17097 * 14 13 12 17 17 N 1.30829 * 120.00525 * 16.79766 * 16 14 13 18 18 Si 1.86805 * 119.99523 * 196.79362 * 16 14 13 19 19 H 1.48501 * 109.46920 * 90.00477 * 18 16 14 20 20 H 1.48503 * 109.46810 * 210.00048 * 18 16 14 21 21 H 1.48491 * 109.47508 * 330.00280 * 18 16 14 22 22 C 1.38240 * 119.94927 * 325.51852 * 9 8 6 23 23 H 1.09004 * 109.46963 * 299.99377 * 1 2 3 24 24 H 1.08994 * 109.47727 * 60.00016 * 1 2 3 25 25 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47337 * 240.00733 * 2 1 3 27 27 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47234 * 300.00182 * 3 2 1 29 29 H 1.08999 * 109.47437 * 60.00240 * 3 2 1 30 30 H 1.08998 * 109.46936 * 300.00234 * 5 4 2 31 31 H 1.09002 * 109.47187 * 60.00221 * 5 4 2 32 32 H 0.96995 * 120.00023 * 354.88951 * 8 6 5 33 33 H 1.08003 * 119.79026 * 359.97438 * 10 9 8 34 34 H 1.08002 * 119.83918 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.06022 * 180.02562 * 12 11 10 36 36 H 0.96993 * 120.00217 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.15986 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0782 0.9886 6 6 2.7004 -2.6833 2.2748 7 8 2.8735 -1.9811 3.2485 8 7 2.9555 -4.0050 2.3432 9 6 3.5205 -4.5495 3.5020 10 6 3.1659 -5.8326 3.9117 11 6 3.7184 -6.3810 5.0570 12 6 4.6256 -5.6632 5.8035 13 6 4.9935 -4.3654 5.4019 14 6 5.9242 -3.6217 6.1637 15 1 5.9135 -2.5425 6.1257 16 6 6.8592 -4.2843 6.9668 17 7 7.1009 -5.5559 6.7764 18 14 7.7623 -3.3531 8.3110 19 1 6.9883 -3.4350 9.5757 20 1 9.1053 -3.9539 8.5128 21 1 7.9112 -1.9302 7.9131 22 6 4.4339 -3.8151 4.2351 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.2539 -2.5433 0.7124 31 1 2.9320 -2.2466 0.1985 32 1 2.7475 -4.5788 1.5894 33 1 2.4547 -6.4033 3.3329 34 1 3.4370 -7.3770 5.3657 35 1 5.0543 -6.0951 6.6958 36 1 7.7492 -6.0150 7.3328 37 1 4.7130 -2.8219 3.9157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313427096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = -68.381061 kcal Electronic energy + Delta-G solvation = -19099.902599 eV Core-core repulsion = 16034.856651 eV Total energy + Delta-G solvation = -3065.045948 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.76531 -38.24821 -36.96128 -34.41525 -33.04291 -32.83759 -29.79811 -29.08550 -27.45821 -26.69910 -25.25751 -21.70464 -21.43177 -20.83292 -19.61699 -17.81947 -16.96053 -16.69119 -15.93840 -15.46335 -15.04594 -14.70688 -14.50980 -14.22950 -13.67674 -13.07971 -12.98669 -12.87034 -12.62228 -12.37161 -12.12858 -12.01618 -11.64241 -11.56842 -11.15757 -11.11119 -10.90493 -10.85458 -10.43357 -10.11287 -9.74498 -9.62376 -9.36343 -9.04624 -8.91759 -7.42802 -6.90223 -6.68738 -4.31083 2.59766 2.86100 3.05207 3.11964 3.17430 3.22652 3.40304 3.99272 4.10916 4.66917 4.68985 4.82304 4.96311 5.01592 5.10197 5.20297 5.39641 5.52155 5.61214 5.66537 5.74691 5.99616 6.04896 6.26083 6.40855 6.76573 6.97252 7.06005 7.09101 7.13004 7.28584 7.59837 7.74844 7.98924 8.12712 8.18915 8.29393 8.65513 8.75962 8.96979 9.01194 10.24486 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.004267 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.557320 B = 6561.154910 C = 7513.765781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.355 6.355 5 C 0.047 3.953 6 C 0.502 3.498 7 O -0.495 6.495 8 N -0.668 5.668 9 C 0.152 3.848 10 C -0.261 4.261 11 C -0.092 4.092 12 C -0.172 4.172 13 C 0.120 3.880 14 C -0.458 4.458 15 H 0.079 0.921 16 C 0.076 3.924 17 N -0.796 5.796 18 Si 0.909 3.091 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.210 4.210 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.398 0.602 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.119 0.881 36 H 0.280 0.720 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.228 4.909 -12.788 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.020 3.980 3 C -0.207 4.207 4 O -0.273 6.273 5 C -0.033 4.033 6 C 0.287 3.713 7 O -0.368 6.368 8 N -0.314 5.314 9 C 0.061 3.939 10 C -0.283 4.283 11 C -0.111 4.111 12 C -0.191 4.191 13 C 0.117 3.883 14 C -0.488 4.488 15 H 0.097 0.903 16 C -0.141 4.141 17 N -0.422 5.422 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.232 4.232 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.232 0.768 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.906 5.396 -11.851 15.234 hybrid contribution 0.232 -0.227 -0.146 0.356 sum -7.673 5.169 -11.997 15.151 Atomic orbital electron populations 1.22316 0.95983 1.02375 1.02673 1.22158 0.93695 0.94099 0.88036 1.21850 1.02066 0.94288 1.02484 1.88100 1.86490 1.17846 1.34899 1.22230 1.00906 0.84010 0.96192 1.20207 0.78949 0.82511 0.89608 1.90783 1.49006 1.60162 1.36799 1.43330 1.62784 1.07764 1.17542 1.17407 0.95135 0.93739 0.87641 1.20028 1.09242 0.96490 1.02509 1.20460 0.97708 0.97875 0.95103 1.21355 0.99861 0.96573 1.01350 1.17491 0.89840 0.91733 0.89230 1.19610 1.12712 0.94824 1.21658 0.90297 1.25900 0.96348 0.94885 0.96991 1.69825 1.27852 1.10394 1.34086 0.86299 0.78433 0.80783 0.81141 1.19261 1.20367 1.18568 1.20994 1.02680 1.01182 0.98321 0.91538 0.91670 0.92513 0.92157 0.91799 0.91315 0.91554 0.90703 0.90414 0.76845 0.89280 0.89019 0.86282 0.90961 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.53 37.16 0.35 -1.20 16 2 C 0.08 0.81 3.34 -26.73 -0.09 0.72 16 3 C -0.15 -1.41 9.56 37.16 0.36 -1.05 16 4 O -0.36 -5.28 9.52 -55.14 -0.52 -5.80 16 5 C 0.05 0.61 6.23 36.00 0.22 0.83 16 6 C 0.50 9.34 7.63 -10.99 -0.08 9.26 16 7 O -0.50 -11.91 14.25 -14.36 -0.20 -12.12 16 8 N -0.67 -12.03 5.34 -9.91 -0.05 -12.08 16 9 C 0.15 3.52 6.25 -83.76 -0.52 2.99 16 10 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.58 16 12 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 13 C 0.12 3.37 5.57 -106.85 -0.59 2.78 16 14 C -0.46 -12.86 9.05 -37.74 -0.34 -13.20 16 15 H 0.08 2.19 7.90 -52.49 -0.41 1.78 16 16 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 17 N -0.80 -20.98 10.94 55.55 0.61 -20.37 16 18 Si 0.91 19.43 29.59 -169.99 -5.03 14.40 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 21 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.21 -5.60 8.39 -38.68 -0.32 -5.93 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.48 7.87 -51.93 -0.41 0.07 16 26 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.75 7.87 -51.93 -0.41 0.34 16 31 H 0.08 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.40 5.31 8.82 -40.82 -0.36 4.95 16 33 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 35 H 0.12 3.25 6.16 -52.49 -0.32 2.92 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 37 H 0.11 2.92 6.48 -52.49 -0.34 2.58 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -32.78 316.45 -7.85 -40.63 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -5.17 Total: 7.20 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -2.24 Total: -16.62 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.55 Total: -32.46 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.73 Total: -17.92 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.78 -7.85 -40.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.749 kcal (2) G-P(sol) polarization free energy of solvation -32.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds