Wall clock time and date at job start Mon Mar 30 2020 00:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46896 * 2 1 4 4 O 1.42902 * 109.47530 * 119.99776 * 2 1 3 5 5 C 1.42904 * 113.99522 * 90.00011 * 4 2 1 6 6 C 1.50693 * 109.46729 * 180.02562 * 5 4 2 7 7 O 1.21290 * 120.00524 * 0.02562 * 6 5 4 8 8 N 1.34784 * 119.99870 * 180.02562 * 6 5 4 9 9 C 1.39939 * 119.99812 * 174.88959 * 8 6 5 10 10 C 1.39289 * 119.94398 * 145.78305 * 9 8 6 11 11 C 1.38488 * 120.42937 * 180.02562 * 10 9 8 12 12 C 1.37680 * 120.32187 * 359.97438 * 11 10 9 13 13 C 1.40743 * 119.88597 * 0.03003 * 12 11 10 14 14 C 1.41408 * 120.21375 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00248 * 205.17360 * 14 13 12 16 16 C 1.39933 * 119.99579 * 25.17097 * 14 13 12 17 17 N 1.30829 * 120.00525 * 16.79766 * 16 14 13 18 18 Si 1.86805 * 119.99523 * 196.79362 * 16 14 13 19 19 H 1.48501 * 109.46920 * 90.00477 * 18 16 14 20 20 H 1.48503 * 109.46810 * 210.00048 * 18 16 14 21 21 H 1.48491 * 109.47508 * 330.00280 * 18 16 14 22 22 C 1.38240 * 119.94927 * 325.51852 * 9 8 6 23 23 H 1.09004 * 109.46963 * 299.99377 * 1 2 3 24 24 H 1.08994 * 109.47727 * 60.00016 * 1 2 3 25 25 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47337 * 240.00733 * 2 1 3 27 27 H 1.08995 * 109.47070 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47234 * 300.00182 * 3 2 1 29 29 H 1.08999 * 109.47437 * 60.00240 * 3 2 1 30 30 H 1.08998 * 109.46936 * 300.00234 * 5 4 2 31 31 H 1.09002 * 109.47187 * 60.00221 * 5 4 2 32 32 H 0.96995 * 120.00023 * 354.88951 * 8 6 5 33 33 H 1.08003 * 119.79026 * 359.97438 * 10 9 8 34 34 H 1.08002 * 119.83918 * 180.02562 * 11 10 9 35 35 H 1.08002 * 120.06022 * 180.02562 * 12 11 10 36 36 H 0.96993 * 120.00217 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.15986 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0782 0.9886 6 6 2.7004 -2.6833 2.2748 7 8 2.8735 -1.9811 3.2485 8 7 2.9555 -4.0050 2.3432 9 6 3.5205 -4.5495 3.5020 10 6 3.1659 -5.8326 3.9117 11 6 3.7184 -6.3810 5.0570 12 6 4.6256 -5.6632 5.8035 13 6 4.9935 -4.3654 5.4019 14 6 5.9242 -3.6217 6.1637 15 1 5.9135 -2.5425 6.1257 16 6 6.8592 -4.2843 6.9668 17 7 7.1009 -5.5559 6.7764 18 14 7.7623 -3.3531 8.3110 19 1 6.9883 -3.4350 9.5757 20 1 9.1053 -3.9539 8.5128 21 1 7.9112 -1.9302 7.9131 22 6 4.4339 -3.8151 4.2351 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.2539 -2.5433 0.7124 31 1 2.9320 -2.2466 0.1985 32 1 2.7475 -4.5788 1.5894 33 1 2.4547 -6.4033 3.3329 34 1 3.4370 -7.3770 5.3657 35 1 5.0543 -6.0951 6.6958 36 1 7.7492 -6.0150 7.3328 37 1 4.7130 -2.8219 3.9157 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313427096.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:38 Heat of formation + Delta-G solvation = -89.603582 kcal Electronic energy + Delta-G solvation = -19100.822876 eV Core-core repulsion = 16034.856651 eV Total energy + Delta-G solvation = -3065.966226 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.28386 -39.46232 -38.62488 -36.21386 -34.86052 -33.71022 -31.76754 -30.67640 -28.36822 -27.90568 -27.23891 -23.39154 -22.72947 -22.23537 -21.27420 -19.60497 -18.23459 -17.97211 -17.29989 -17.08272 -16.65250 -16.44311 -15.82245 -15.55527 -15.05232 -14.73069 -14.55386 -14.10515 -13.85261 -13.54558 -13.47233 -13.06041 -13.03379 -12.96268 -12.86007 -12.76850 -12.35219 -12.19260 -11.98051 -11.62975 -11.52879 -11.17195 -10.89413 -10.65610 -10.60994 -9.41353 -8.77750 -8.62388 -6.39085 0.83779 0.98187 1.35119 1.47153 1.48706 1.74673 1.87182 2.20432 2.71621 3.03725 3.66035 3.76247 4.02778 4.10806 4.16791 4.29034 4.32403 4.46057 4.62407 4.76079 4.81832 4.92301 4.94528 5.02754 5.08040 5.10668 5.21578 5.29452 5.31518 5.34706 5.73710 5.84110 6.06129 6.09024 6.21340 6.33022 6.64137 6.68120 6.92011 6.99331 7.31647 8.31894 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.004267 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.557320 B = 6561.154910 C = 7513.765781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.070 3.930 3 C -0.151 4.151 4 O -0.398 6.398 5 C 0.057 3.943 6 C 0.495 3.505 7 O -0.560 6.560 8 N -0.654 5.654 9 C 0.157 3.843 10 C -0.248 4.248 11 C -0.091 4.091 12 C -0.198 4.198 13 C 0.089 3.911 14 C -0.506 4.506 15 H 0.060 0.940 16 C 0.039 3.961 17 N -0.821 5.821 18 Si 0.982 3.018 19 H -0.259 1.259 20 H -0.259 1.259 21 H -0.266 1.266 22 C -0.240 4.240 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.425 0.575 33 H 0.136 0.864 34 H 0.126 0.874 35 H 0.105 0.895 36 H 0.290 0.710 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.495 3.889 -14.871 18.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 C -0.208 4.208 4 O -0.318 6.318 5 C -0.022 4.022 6 C 0.283 3.717 7 O -0.437 6.437 8 N -0.302 5.302 9 C 0.064 3.936 10 C -0.269 4.269 11 C -0.109 4.109 12 C -0.218 4.218 13 C 0.086 3.914 14 C -0.535 4.535 15 H 0.078 0.922 16 C -0.176 4.176 17 N -0.447 5.447 18 Si 0.802 3.198 19 H -0.184 1.184 20 H -0.183 1.183 21 H -0.191 1.191 22 C -0.262 4.262 23 H 0.066 0.934 24 H 0.108 0.892 25 H 0.081 0.919 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.067 0.933 30 H 0.134 0.866 31 H 0.131 0.869 32 H 0.264 0.736 33 H 0.154 0.846 34 H 0.143 0.857 35 H 0.123 0.877 36 H 0.101 0.899 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.200 4.340 -14.005 17.310 hybrid contribution 0.514 0.068 0.357 0.629 sum -8.687 4.408 -13.649 16.768 Atomic orbital electron populations 1.22303 0.94859 1.02900 1.02980 1.22465 0.94622 0.94069 0.87529 1.21906 1.01449 0.94392 1.03087 1.88067 1.87183 1.18810 1.37696 1.22286 1.03506 0.83482 0.92899 1.21398 0.77310 0.82026 0.90938 1.90766 1.51689 1.61563 1.39671 1.43209 1.61760 1.08372 1.16849 1.17511 0.93677 0.93800 0.88577 1.20497 1.08574 0.95983 1.01836 1.20865 0.96209 0.98975 0.94898 1.21324 1.01803 0.96632 1.02034 1.17828 0.90612 0.92868 0.90060 1.19750 1.14960 0.94199 1.24621 0.92181 1.26677 0.96497 0.95850 0.98530 1.69845 1.28395 1.11548 1.34885 0.85226 0.77815 0.78946 0.77810 1.18399 1.18328 1.19065 1.20949 1.05081 1.00775 0.99418 0.93402 0.89196 0.91871 0.89403 0.92831 0.88368 0.93280 0.86648 0.86912 0.73648 0.84598 0.85651 0.87692 0.89916 0.90229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 9.53 71.98 0.69 -1.92 16 2 C 0.07 1.28 3.34 30.59 0.10 1.38 16 3 C -0.15 -2.66 9.56 71.98 0.69 -1.97 16 4 O -0.40 -11.36 9.52 -129.94 -1.24 -12.59 16 5 C 0.06 1.33 6.23 71.23 0.44 1.78 16 6 C 0.50 18.07 7.63 87.65 0.67 18.74 16 7 O -0.56 -28.04 14.25 15.98 0.23 -27.82 16 8 N -0.65 -22.30 5.34 -303.65 -1.62 -23.92 16 9 C 0.16 7.20 6.25 38.10 0.24 7.43 16 10 C -0.25 -10.40 9.97 22.58 0.23 -10.18 16 11 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 12 C -0.20 -10.85 8.69 22.75 0.20 -10.65 16 13 C 0.09 5.27 5.57 -21.31 -0.12 5.15 16 14 C -0.51 -30.25 9.05 23.46 0.21 -30.03 16 15 H 0.06 3.64 7.90 -2.91 -0.02 3.62 16 16 C 0.04 2.12 5.16 85.25 0.44 2.56 16 17 N -0.82 -44.43 10.94 21.82 0.24 -44.19 16 18 Si 0.98 40.98 29.59 68.60 2.03 43.01 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 22 C -0.24 -13.43 8.39 22.85 0.19 -13.24 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.86 7.87 -2.39 -0.02 0.84 16 26 H 0.09 1.11 7.79 -2.39 -0.02 1.09 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.12 1.77 7.87 -2.39 -0.02 1.75 16 31 H 0.11 1.85 8.09 -2.39 -0.02 1.83 16 32 H 0.42 9.69 8.82 -92.71 -0.82 8.87 16 33 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 34 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 35 H 0.11 5.94 6.16 -2.91 -0.02 5.92 16 36 H 0.29 14.01 8.30 -92.71 -0.77 13.25 16 37 H 0.08 4.75 6.48 -2.91 -0.02 4.73 16 Total: -1.00 -77.96 316.45 4.09 -73.87 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.25 Total: 26.54 kcal Atomic # 6 Polarization: -39.10 SS G_CDS: 4.20 Total: -34.90 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: -1.38 Total: -68.11 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -1.01 Total: -40.41 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Total: -77.96 4.09 -73.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313427096.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.733 kcal (2) G-P(sol) polarization free energy of solvation -77.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds