Wall clock time and date at job start Mon Mar 30 2020 00:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35896 * 117.00225 * 2 1 4 4 C 1.38748 * 120.05810 * 0.21461 * 3 2 1 5 5 C 1.38123 * 119.94691 * 180.27529 * 4 3 2 6 6 C 1.38294 * 120.05283 * 359.76596 * 5 4 3 7 7 C 1.38242 * 120.11288 * 359.97438 * 6 5 4 8 8 C 1.50691 * 119.97272 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47322 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47311 * 60.02715 * 8 7 6 11 11 C 1.50699 * 109.47493 * 300.02243 * 8 7 6 12 12 O 1.21293 * 119.99679 * 21.84443 * 11 8 7 13 13 N 1.34779 * 120.00361 * 201.83547 * 11 8 7 14 14 C 1.46494 * 119.99786 * 183.47610 * 13 11 8 15 15 C 1.37099 * 119.99631 * 3.47820 * 13 11 8 16 16 H 1.07997 * 120.00504 * 350.08295 * 15 13 11 17 17 C 1.38944 * 119.99670 * 170.09157 * 15 13 11 18 18 N 1.31420 * 120.00188 * 7.15018 * 17 15 13 19 19 Si 1.86796 * 120.00103 * 187.15310 * 17 15 13 20 20 H 1.48499 * 109.47420 * 59.99664 * 19 17 15 21 21 H 1.48503 * 109.47610 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47100 * 299.99739 * 19 17 15 23 23 C 1.38173 * 120.05352 * 0.02779 * 7 6 5 24 24 H 1.09004 * 109.47631 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46993 * 300.00193 * 1 2 3 26 26 H 1.09002 * 109.47374 * 59.99540 * 1 2 3 27 27 H 1.08004 * 120.02766 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.97595 * 179.74432 * 5 4 3 29 29 H 1.08000 * 119.94204 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46984 * 54.68311 * 10 8 7 31 31 H 1.08994 * 109.47297 * 174.68584 * 10 8 7 32 32 H 1.09002 * 109.47014 * 294.68922 * 10 8 7 33 33 H 1.09000 * 109.47540 * 3.40012 * 14 13 11 34 34 H 1.09003 * 109.47046 * 123.40136 * 14 13 11 35 35 H 1.09001 * 109.47461 * 243.39862 * 14 13 11 36 36 H 0.97001 * 119.99591 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.02157 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0045 5 6 1.9210 3.6047 -0.0013 6 6 3.3021 3.6756 -0.0066 7 6 4.0561 2.5169 -0.0057 8 6 5.5608 2.5979 -0.0109 9 1 5.9789 1.5912 -0.0098 10 6 6.0356 3.3486 1.2348 11 6 6.0202 3.3311 -1.2448 12 8 5.2599 4.0768 -1.8254 13 7 7.2759 3.1583 -1.7031 14 6 7.7467 3.9282 -2.8571 15 6 8.1123 2.2621 -1.0893 16 1 7.8273 1.8139 -0.1490 17 6 9.3269 1.9306 -1.6770 18 7 9.7384 2.5769 -2.7448 19 14 10.3750 0.5663 -0.9494 20 1 9.6103 -0.7066 -0.9637 21 1 11.6122 0.4089 -1.7555 22 1 10.7356 0.9114 0.4492 23 6 3.4311 1.2846 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2129 2.3204 0.0084 28 1 1.3342 4.5114 -0.0019 29 1 3.7924 4.6379 -0.0107 30 1 5.6247 2.8720 2.1248 31 1 7.1243 3.3255 1.2801 32 1 5.6957 4.3832 1.1871 33 1 6.9701 4.6261 -3.1697 34 1 8.6442 4.4825 -2.5823 35 1 7.9765 3.2488 -3.6779 36 1 10.5862 2.3451 -3.1552 37 1 4.0207 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337530239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:53 Heat of formation + Delta-G solvation = -37.186296 kcal Electronic energy + Delta-G solvation = -19895.215924 eV Core-core repulsion = 16831.522683 eV Total energy + Delta-G solvation = -3063.693241 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98849 -38.76587 -37.04788 -34.74920 -33.19909 -31.37763 -30.41231 -28.72745 -27.18207 -26.42609 -24.77116 -23.29195 -22.18782 -20.75485 -19.01442 -17.78005 -16.48415 -16.32188 -15.83163 -15.60971 -15.38994 -14.43486 -14.26522 -14.03343 -13.71763 -13.31536 -13.01660 -12.85349 -12.46432 -12.12898 -12.01688 -11.67006 -11.46684 -11.33421 -11.00594 -10.98878 -10.87030 -10.65327 -10.51693 -10.41739 -10.39745 -10.12775 -9.07010 -8.58948 -8.15510 -7.87706 -7.80088 -6.28897 -3.88802 1.68849 1.87123 3.11022 3.18773 3.19797 3.41838 3.90480 4.05215 4.16645 4.87928 4.99465 5.07515 5.12541 5.14250 5.22740 5.39835 5.45494 5.68745 5.81787 5.84327 5.91563 6.00814 6.19013 6.33464 6.44105 6.53191 6.60593 6.65504 6.87225 6.92527 7.12526 7.19210 7.28145 7.39861 7.52180 7.66053 7.77400 8.39742 9.06890 9.55712 9.95044 10.64714 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.005350 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.268716 B = 5232.603396 C = 5770.312937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.321 6.321 3 C 0.113 3.887 4 C -0.216 4.216 5 C -0.092 4.092 6 C -0.108 4.108 7 C -0.016 4.016 8 C -0.061 4.061 9 H 0.097 0.903 10 C -0.131 4.131 11 C 0.456 3.544 12 O -0.607 6.607 13 N -0.443 5.443 14 C 0.123 3.877 15 C -0.332 4.332 16 H 0.102 0.898 17 C 0.035 3.965 18 N -0.875 5.875 19 Si 0.924 3.076 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C -0.147 4.147 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.127 0.873 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.034 0.966 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.267 0.733 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 -2.485 6.740 13.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.235 6.235 3 C 0.069 3.931 4 C -0.235 4.235 5 C -0.110 4.110 6 C -0.127 4.127 7 C -0.016 4.016 8 C -0.083 4.083 9 H 0.115 0.885 10 C -0.189 4.189 11 C 0.244 3.756 12 O -0.494 6.494 13 N -0.160 5.160 14 C -0.020 4.020 15 C -0.459 4.459 16 H 0.119 0.881 17 C -0.169 4.169 18 N -0.514 5.514 19 Si 0.751 3.249 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.165 4.165 24 H 0.113 0.887 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.137 0.863 29 H 0.145 0.855 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.414 -2.310 6.287 13.235 hybrid contribution 0.481 -0.645 0.183 0.825 sum -10.934 -2.955 6.470 13.044 Atomic orbital electron populations 1.22962 0.79117 1.03336 1.01085 1.86042 1.20792 1.27399 1.89311 1.18871 0.92155 0.83805 0.98283 1.21073 0.99274 0.92582 1.10569 1.20873 0.94740 0.96553 0.98862 1.20970 0.92939 0.98823 0.99930 1.19427 0.94887 0.92028 0.95285 1.20080 0.90592 1.01918 0.95687 0.88514 1.21653 1.02212 0.99832 0.95210 1.19646 0.82477 0.86129 0.87319 1.90518 1.54159 1.43310 1.61442 1.43674 1.09781 1.35193 1.27360 1.21538 0.96448 0.95011 0.88954 1.19725 0.99774 1.20022 1.06409 0.88076 1.25325 0.97678 0.98026 0.95914 1.70218 1.21404 1.39222 1.20577 0.86036 0.79027 0.81061 0.78814 1.19757 1.20800 1.19769 1.20307 0.91153 0.98202 1.06871 0.88706 0.92996 0.92935 0.86254 0.86330 0.85517 0.92656 0.91040 0.92643 0.94782 0.92195 0.91477 0.92201 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.75 10.50 -19.41 -0.20 -4.96 16 3 C 0.11 1.85 6.69 -39.22 -0.26 1.59 16 4 C -0.22 -3.21 9.04 -39.44 -0.36 -3.56 16 5 C -0.09 -1.44 10.04 -39.60 -0.40 -1.84 16 6 C -0.11 -1.97 7.91 -39.56 -0.31 -2.29 16 7 C -0.02 -0.30 4.61 -104.65 -0.48 -0.78 16 8 C -0.06 -1.24 2.05 -92.93 -0.19 -1.43 16 9 H 0.10 1.92 6.38 -51.93 -0.33 1.59 16 10 C -0.13 -2.29 8.76 37.16 0.33 -1.96 16 11 C 0.46 11.15 6.75 -10.99 -0.07 11.07 16 12 O -0.61 -16.06 13.91 5.55 0.08 -15.98 16 13 N -0.44 -11.41 3.03 -122.20 -0.37 -11.78 16 14 C 0.12 3.15 8.87 59.84 0.53 3.68 16 15 C -0.33 -8.34 8.88 -14.93 -0.13 -8.47 16 16 H 0.10 2.35 5.43 -52.49 -0.28 2.06 16 17 C 0.03 0.86 5.46 -17.47 -0.10 0.77 16 18 N -0.87 -22.81 9.50 55.50 0.53 -22.29 16 19 Si 0.92 19.34 29.56 -169.99 -5.02 14.31 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 23 C -0.15 -2.62 9.61 -39.43 -0.38 -3.00 16 24 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 26 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 27 H 0.12 1.41 6.30 -52.48 -0.33 1.08 16 28 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.13 2.39 7.02 -52.49 -0.37 2.02 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.28 7.29 -51.93 -0.38 0.90 16 32 H 0.05 0.95 7.58 -51.93 -0.39 0.56 16 33 H 0.03 0.85 6.92 -51.93 -0.36 0.49 16 34 H 0.06 1.55 7.26 -51.93 -0.38 1.17 16 35 H 0.07 1.78 6.87 -51.93 -0.36 1.42 16 36 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 37 H 0.13 2.15 7.94 -52.49 -0.42 1.73 16 LS Contribution 303.27 15.07 4.57 4.57 Total: -1.00 -29.68 303.27 -6.05 -35.73 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -4.80 Total: 5.29 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.84 Total: -4.91 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.16 Total: -34.06 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -0.13 Total: -20.94 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.68 -6.05 -35.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337530239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.454 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds