Wall clock time and date at job start Mon Mar 30 2020 00:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35896 * 117.00225 * 2 1 4 4 C 1.38748 * 120.05810 * 0.21461 * 3 2 1 5 5 C 1.38123 * 119.94691 * 180.27529 * 4 3 2 6 6 C 1.38294 * 120.05283 * 359.76596 * 5 4 3 7 7 C 1.38242 * 120.11288 * 359.97438 * 6 5 4 8 8 C 1.50691 * 119.97272 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.47322 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47311 * 60.02715 * 8 7 6 11 11 C 1.50699 * 109.47493 * 300.02243 * 8 7 6 12 12 O 1.21293 * 119.99679 * 21.84443 * 11 8 7 13 13 N 1.34779 * 120.00361 * 201.83547 * 11 8 7 14 14 C 1.46494 * 119.99786 * 183.47610 * 13 11 8 15 15 C 1.37099 * 119.99631 * 3.47820 * 13 11 8 16 16 H 1.07997 * 120.00504 * 350.08295 * 15 13 11 17 17 C 1.38944 * 119.99670 * 170.09157 * 15 13 11 18 18 N 1.31420 * 120.00188 * 7.15018 * 17 15 13 19 19 Si 1.86796 * 120.00103 * 187.15310 * 17 15 13 20 20 H 1.48499 * 109.47420 * 59.99664 * 19 17 15 21 21 H 1.48503 * 109.47610 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47100 * 299.99739 * 19 17 15 23 23 C 1.38173 * 120.05352 * 0.02779 * 7 6 5 24 24 H 1.09004 * 109.47631 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46993 * 300.00193 * 1 2 3 26 26 H 1.09002 * 109.47374 * 59.99540 * 1 2 3 27 27 H 1.08004 * 120.02766 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.97595 * 179.74432 * 5 4 3 29 29 H 1.08000 * 119.94204 * 180.02562 * 6 5 4 30 30 H 1.09001 * 109.46984 * 54.68311 * 10 8 7 31 31 H 1.08994 * 109.47297 * 174.68584 * 10 8 7 32 32 H 1.09002 * 109.47014 * 294.68922 * 10 8 7 33 33 H 1.09000 * 109.47540 * 3.40012 * 14 13 11 34 34 H 1.09003 * 109.47046 * 123.40136 * 14 13 11 35 35 H 1.09001 * 109.47461 * 243.39862 * 14 13 11 36 36 H 0.97001 * 119.99591 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.02157 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0045 5 6 1.9210 3.6047 -0.0013 6 6 3.3021 3.6756 -0.0066 7 6 4.0561 2.5169 -0.0057 8 6 5.5608 2.5979 -0.0109 9 1 5.9789 1.5912 -0.0098 10 6 6.0356 3.3486 1.2348 11 6 6.0202 3.3311 -1.2448 12 8 5.2599 4.0768 -1.8254 13 7 7.2759 3.1583 -1.7031 14 6 7.7467 3.9282 -2.8571 15 6 8.1123 2.2621 -1.0893 16 1 7.8273 1.8139 -0.1490 17 6 9.3269 1.9306 -1.6770 18 7 9.7384 2.5769 -2.7448 19 14 10.3750 0.5663 -0.9494 20 1 9.6103 -0.7066 -0.9637 21 1 11.6122 0.4089 -1.7555 22 1 10.7356 0.9114 0.4492 23 6 3.4311 1.2846 0.0000 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 0.2129 2.3204 0.0084 28 1 1.3342 4.5114 -0.0019 29 1 3.7924 4.6379 -0.0107 30 1 5.6247 2.8720 2.1248 31 1 7.1243 3.3255 1.2801 32 1 5.6957 4.3832 1.1871 33 1 6.9701 4.6261 -3.1697 34 1 8.6442 4.4825 -2.5823 35 1 7.9765 3.2488 -3.6779 36 1 10.5862 2.3451 -3.1552 37 1 4.0207 0.3798 0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337530239.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:53 Heat of formation + Delta-G solvation = -54.167129 kcal Electronic energy + Delta-G solvation = -19895.952268 eV Core-core repulsion = 16831.522683 eV Total energy + Delta-G solvation = -3064.429586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.32867 -40.39495 -38.39701 -36.68963 -34.70649 -33.32188 -31.63856 -30.07392 -28.37140 -28.08164 -26.63473 -24.82985 -23.44951 -22.20093 -20.82830 -19.24116 -18.10810 -17.98976 -17.04555 -16.78866 -16.57949 -16.17968 -15.98423 -15.85340 -15.22191 -14.67053 -14.46681 -14.27421 -14.00255 -13.48522 -13.35736 -13.23278 -13.03421 -12.86918 -12.68473 -12.55924 -12.31399 -12.17798 -12.16146 -12.05160 -11.82964 -11.55946 -10.99136 -10.27015 -9.88822 -9.69641 -9.04896 -8.20849 -5.87565 0.40215 0.58612 1.45711 1.48379 1.58301 2.04326 2.28957 2.40318 2.79883 3.14147 3.18121 3.79540 3.93146 4.16515 4.22713 4.35468 4.37155 4.43897 4.45819 4.53156 4.62288 4.73830 4.75785 4.87470 4.99842 5.01403 5.15271 5.15708 5.25515 5.36328 5.42816 5.47032 5.57639 5.79556 5.82932 5.89187 6.43423 6.52973 7.12280 7.61294 8.00105 8.74392 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024943 B = 0.005350 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.268716 B = 5232.603396 C = 5770.312937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.113 3.887 4 C -0.208 4.208 5 C -0.088 4.088 6 C -0.129 4.129 7 C -0.035 4.035 8 C -0.054 4.054 9 H 0.096 0.904 10 C -0.123 4.123 11 C 0.449 3.551 12 O -0.632 6.632 13 N -0.460 5.460 14 C 0.138 3.862 15 C -0.349 4.349 16 H 0.118 0.882 17 C -0.012 4.012 18 N -0.906 5.906 19 Si 0.994 3.006 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.260 1.260 23 C -0.166 4.166 24 H 0.119 0.881 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.156 0.844 28 H 0.148 0.852 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.268 0.732 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -3.747 8.233 15.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.068 3.932 4 C -0.226 4.226 5 C -0.106 4.106 6 C -0.148 4.148 7 C -0.036 4.036 8 C -0.075 4.075 9 H 0.114 0.886 10 C -0.181 4.181 11 C 0.238 3.762 12 O -0.521 6.521 13 N -0.177 5.177 14 C -0.005 4.005 15 C -0.476 4.476 16 H 0.135 0.865 17 C -0.213 4.213 18 N -0.545 5.545 19 Si 0.817 3.183 20 H -0.192 1.192 21 H -0.210 1.210 22 H -0.184 1.184 23 C -0.184 4.184 24 H 0.137 0.863 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.129 0.871 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.079 -3.574 7.795 15.639 hybrid contribution 0.841 -0.249 -0.320 0.934 sum -12.237 -3.823 7.475 14.841 Atomic orbital electron populations 1.23343 0.76443 1.05508 1.02286 1.86029 1.23545 1.26677 1.88966 1.18973 0.91860 0.85023 0.97384 1.21443 1.01040 0.91516 1.08643 1.21201 0.93808 0.98266 0.97360 1.20965 0.94351 0.97855 1.01613 1.19370 0.94089 0.92954 0.97185 1.20016 0.91872 1.01237 0.94380 0.88634 1.21609 1.01692 0.99641 0.95134 1.20470 0.81752 0.85763 0.88208 1.90482 1.54756 1.44400 1.62509 1.43950 1.10637 1.35656 1.27502 1.21279 0.95788 0.94500 0.88945 1.20161 1.00047 1.20170 1.07222 0.86491 1.26255 0.98739 1.00015 0.96258 1.70338 1.21857 1.40519 1.21821 0.84966 0.76947 0.77946 0.78424 1.19186 1.20998 1.18435 1.20380 0.92418 0.97732 1.07916 0.86300 0.91328 0.92031 0.82665 0.83415 0.87114 0.89772 0.91780 0.92971 0.95142 0.93140 0.92914 0.92178 0.85497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.34 -9.17 10.50 -92.38 -0.97 -10.14 16 3 C 0.11 3.45 6.69 22.51 0.15 3.60 16 4 C -0.21 -5.53 9.04 22.36 0.20 -5.32 16 5 C -0.09 -2.57 10.04 22.26 0.22 -2.34 16 6 C -0.13 -4.66 7.91 22.28 0.18 -4.48 16 7 C -0.04 -1.34 4.61 -19.88 -0.09 -1.43 16 8 C -0.05 -2.18 2.05 -12.29 -0.03 -2.20 16 9 H 0.10 3.82 6.38 -2.39 -0.02 3.80 16 10 C -0.12 -4.23 8.76 71.98 0.63 -3.60 16 11 C 0.45 22.40 6.75 87.66 0.59 22.99 16 12 O -0.63 -34.37 13.91 -3.07 -0.04 -34.42 16 13 N -0.46 -24.27 3.03 -658.90 -1.99 -26.26 16 14 C 0.14 7.34 8.87 127.77 1.13 8.47 16 15 C -0.35 -17.66 8.88 84.04 0.75 -16.91 16 16 H 0.12 5.39 5.43 -2.91 -0.02 5.37 16 17 C -0.01 -0.60 5.46 84.92 0.46 -0.14 16 18 N -0.91 -48.01 9.50 21.66 0.21 -47.81 16 19 Si 0.99 39.22 29.56 68.60 2.03 41.24 16 20 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 21 H -0.28 -11.22 7.11 99.48 0.71 -10.52 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.17 -5.81 9.61 22.37 0.21 -5.60 16 24 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.07 0.90 7.65 -2.39 -0.02 0.88 16 26 H 0.06 0.90 7.67 -2.39 -0.02 0.88 16 27 H 0.16 2.94 6.30 -2.91 -0.02 2.92 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.11 4.26 7.02 -2.91 -0.02 4.24 16 30 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.06 2.27 7.29 -2.39 -0.02 2.25 16 32 H 0.05 1.80 7.58 -2.39 -0.02 1.78 16 33 H 0.03 1.58 6.92 -2.39 -0.02 1.57 16 34 H 0.05 2.71 7.26 -2.39 -0.02 2.70 16 35 H 0.05 2.91 6.87 -2.39 -0.02 2.89 16 36 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 37 H 0.13 4.29 7.94 -2.91 -0.02 4.26 16 Total: -1.00 -64.56 303.27 5.83 -58.73 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: 1.07 Total: 24.22 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.53 Total: -5.56 kcal Atomic # 7 Polarization: -72.28 SS G_CDS: -1.79 Total: -74.07 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.01 Total: -44.56 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.24 kcal Total: -64.56 5.83 -58.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337530239.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.565 kcal (2) G-P(sol) polarization free energy of solvation -64.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds