Wall clock time and date at job start Mon Mar 30 2020 00:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35900 * 116.99950 * 2 1 4 4 C 1.38746 * 120.05704 * 0.20994 * 3 2 1 5 5 C 1.38123 * 119.94656 * 180.22988 * 4 3 2 6 6 C 1.38291 * 120.05427 * 359.81529 * 5 4 3 7 7 C 1.38245 * 120.10752 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.96720 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.46904 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47201 * 299.97742 * 8 7 6 11 11 C 1.50706 * 109.47302 * 59.97883 * 8 7 6 12 12 O 1.21296 * 119.99999 * 359.97438 * 11 8 7 13 13 N 1.34774 * 120.00191 * 180.02562 * 11 8 7 14 14 C 1.46498 * 119.99947 * 359.97438 * 13 11 8 15 15 C 1.37092 * 120.00204 * 180.02562 * 13 11 8 16 16 H 1.08005 * 120.00412 * 22.59560 * 15 13 11 17 17 C 1.38948 * 120.00112 * 202.60401 * 15 13 11 18 18 N 1.31411 * 119.99921 * 10.41354 * 17 15 13 19 19 Si 1.86803 * 120.00067 * 190.41728 * 17 15 13 20 20 H 1.48501 * 109.47076 * 59.99700 * 19 17 15 21 21 H 1.48502 * 109.46870 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47154 * 299.99713 * 19 17 15 23 23 C 1.38161 * 120.06165 * 359.97434 * 7 6 5 24 24 H 1.08995 * 109.47611 * 59.99729 * 1 2 3 25 25 H 1.09008 * 109.47106 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47183 * 299.99584 * 1 2 3 27 27 H 1.08002 * 120.02902 * 0.02809 * 4 3 2 28 28 H 1.08002 * 119.97219 * 179.79189 * 5 4 3 29 29 H 1.08003 * 119.94358 * 179.97438 * 6 5 4 30 30 H 1.08999 * 109.47028 * 299.99704 * 10 8 7 31 31 H 1.08999 * 109.47006 * 60.00197 * 10 8 7 32 32 H 1.09000 * 109.46705 * 180.02562 * 10 8 7 33 33 H 1.09000 * 109.47110 * 93.38737 * 14 13 11 34 34 H 1.09004 * 109.47332 * 213.39360 * 14 13 11 35 35 H 1.09001 * 109.47017 * 333.39272 * 14 13 11 36 36 H 0.96999 * 119.99894 * 180.02562 * 18 17 15 37 37 H 1.07992 * 120.03085 * 179.97438 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3752 0.0044 5 6 1.9208 3.6047 -0.0004 6 6 3.3019 3.6758 -0.0057 7 6 4.0559 2.5170 -0.0057 8 6 5.5607 2.5981 -0.0122 9 1 5.9788 1.5915 -0.0107 10 6 6.0261 3.3420 -1.2656 11 6 6.0292 3.3383 1.2142 12 8 5.2206 3.7591 2.0144 13 7 7.3465 3.5337 1.4212 14 6 8.3231 3.0261 0.4544 15 6 7.7727 4.2066 2.5370 16 1 7.1386 4.2615 3.4097 17 6 9.0203 4.8181 2.5454 18 7 9.7044 4.9304 1.4290 19 14 9.7253 5.4803 4.1435 20 1 9.8629 4.3710 5.1211 21 1 11.0590 6.0802 3.8851 22 1 8.8147 6.5158 4.6947 23 6 3.4311 1.2848 0.0001 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.2128 2.3203 0.0083 28 1 1.3339 4.5113 -0.0004 29 1 3.7922 4.6381 -0.0099 30 1 5.6873 2.8066 -2.1526 31 1 5.6080 4.3486 -1.2670 32 1 7.1145 3.4002 -1.2704 33 1 8.5602 3.8079 -0.2671 34 1 9.2313 2.7272 0.9781 35 1 7.9045 2.1653 -0.0670 36 1 10.5756 5.3570 1.4349 37 1 4.0206 0.3799 -0.0003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337530245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:55 Heat of formation + Delta-G solvation = -35.781246 kcal Electronic energy + Delta-G solvation = -19833.424965 eV Core-core repulsion = 16769.792651 eV Total energy + Delta-G solvation = -3063.632314 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.04980 -38.82461 -37.07584 -34.62571 -33.39845 -31.45155 -30.44823 -28.73462 -27.23352 -26.16205 -25.00541 -23.39387 -22.26837 -21.07829 -18.91913 -17.20967 -16.83674 -16.35092 -15.87715 -15.64982 -15.40050 -14.49534 -14.42430 -14.20936 -13.63935 -13.40910 -13.16484 -12.70113 -12.55106 -12.27614 -11.97855 -11.77990 -11.43399 -11.31210 -11.15890 -11.05309 -10.84467 -10.75070 -10.58662 -10.42318 -10.28335 -10.15645 -8.97207 -8.59204 -8.19883 -7.85664 -7.63860 -6.27286 -3.84392 1.64433 1.81505 3.21122 3.26134 3.30308 3.36997 3.93691 4.05457 4.21368 4.89003 4.97603 5.05928 5.09649 5.15416 5.18663 5.31177 5.39877 5.56076 5.70346 5.76619 5.78267 5.85616 6.00737 6.22160 6.25756 6.39425 6.40685 6.54920 6.59024 6.80173 6.91203 7.03533 7.10500 7.26678 7.59567 7.60370 8.17201 8.53029 9.23017 9.46815 10.03303 10.76041 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036717 B = 0.004563 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.414852 B = 6134.559939 C = 6333.446041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.216 4.216 5 C -0.087 4.087 6 C -0.112 4.112 7 C -0.007 4.007 8 C -0.068 4.068 9 H 0.089 0.911 10 C -0.148 4.148 11 C 0.454 3.546 12 O -0.581 6.581 13 N -0.446 5.446 14 C 0.111 3.889 15 C -0.304 4.304 16 H 0.097 0.903 17 C 0.030 3.970 18 N -0.886 5.886 19 Si 0.926 3.074 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C -0.148 4.148 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.123 0.877 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.071 -6.514 -6.936 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.236 6.236 3 C 0.071 3.929 4 C -0.234 4.234 5 C -0.105 4.105 6 C -0.131 4.131 7 C -0.008 4.008 8 C -0.090 4.090 9 H 0.107 0.893 10 C -0.206 4.206 11 C 0.241 3.759 12 O -0.465 6.465 13 N -0.165 5.165 14 C -0.033 4.033 15 C -0.432 4.432 16 H 0.115 0.885 17 C -0.172 4.172 18 N -0.526 5.526 19 Si 0.753 3.247 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.166 4.166 24 H 0.070 0.930 25 H 0.113 0.887 26 H 0.071 0.929 27 H 0.138 0.862 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.077 0.923 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.159 -6.412 -6.587 14.458 hybrid contribution 0.284 0.488 0.734 0.926 sum -10.875 -5.924 -5.853 13.697 Atomic orbital electron populations 1.22970 0.79034 1.03369 1.01154 1.86035 1.20867 1.27367 1.89288 1.18862 0.92139 0.83830 0.98073 1.21073 0.99344 0.92534 1.10490 1.20854 0.94617 0.96661 0.98400 1.20885 0.93169 0.98549 1.00451 1.19250 0.94429 0.92118 0.94991 1.20213 0.91420 1.00968 0.96378 0.89314 1.22015 1.03270 1.00208 0.95079 1.19810 0.82974 0.85357 0.87763 1.90537 1.53073 1.55162 1.47694 1.43511 1.03511 1.48297 1.21181 1.21655 0.92663 0.96084 0.92848 1.19608 1.01347 1.29725 0.92538 0.88526 1.25314 0.97229 0.96451 0.98232 1.69977 1.13939 1.43169 1.25482 0.85997 0.77902 0.79185 0.81594 1.19986 1.20979 1.19852 1.20228 0.91184 0.97956 1.07268 0.92951 0.88678 0.92878 0.86153 0.86203 0.85915 0.92620 0.92290 0.90120 0.91899 0.91613 0.95303 0.92288 0.85634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.55 10.50 -19.43 -0.20 -4.75 16 3 C 0.12 1.82 6.69 -39.22 -0.26 1.56 16 4 C -0.22 -3.14 9.04 -39.44 -0.36 -3.49 16 5 C -0.09 -1.35 10.04 -39.60 -0.40 -1.75 16 6 C -0.11 -2.04 7.92 -39.56 -0.31 -2.35 16 7 C -0.01 -0.14 4.40 -104.65 -0.46 -0.60 16 8 C -0.07 -1.29 2.09 -92.92 -0.19 -1.49 16 9 H 0.09 1.54 7.14 -51.93 -0.37 1.17 16 10 C -0.15 -2.47 8.61 37.16 0.32 -2.15 16 11 C 0.45 11.12 6.90 -10.98 -0.08 11.04 16 12 O -0.58 -16.20 14.80 5.54 0.08 -16.12 16 13 N -0.45 -11.45 3.02 -122.19 -0.37 -11.81 16 14 C 0.11 2.45 7.04 59.85 0.42 2.87 16 15 C -0.30 -8.54 9.29 -14.94 -0.14 -8.68 16 16 H 0.10 2.85 7.40 -52.48 -0.39 2.46 16 17 C 0.03 0.81 5.14 -17.47 -0.09 0.72 16 18 N -0.89 -23.49 10.56 55.50 0.59 -22.90 16 19 Si 0.93 20.95 29.57 -169.99 -5.03 15.92 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 C -0.15 -2.52 9.61 -39.43 -0.38 -2.90 16 24 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 25 H 0.09 0.67 8.14 -51.92 -0.42 0.24 16 26 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 27 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 28 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 29 H 0.12 2.33 7.51 -52.48 -0.39 1.93 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.01 7.39 -51.93 -0.38 0.63 16 32 H 0.08 1.36 4.59 -51.93 -0.24 1.13 16 33 H 0.06 1.43 6.50 -51.93 -0.34 1.09 16 34 H 0.07 1.54 7.13 -51.93 -0.37 1.17 16 35 H 0.03 0.53 5.75 -51.93 -0.30 0.23 16 36 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.13 1.96 7.94 -52.49 -0.42 1.54 16 LS Contribution 301.97 15.07 4.55 4.55 Total: -1.00 -31.83 301.97 -6.04 -37.87 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -4.73 Total: 3.18 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -0.93 Total: -5.93 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.22 Total: -34.72 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.12 Total: -20.87 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.83 -6.04 -37.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337530245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.092 kcal (2) G-P(sol) polarization free energy of solvation -31.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds