Wall clock time and date at job start Mon Mar 30 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47173 * 2 1 4 4 O 1.42904 * 109.47096 * 180.02562 * 3 2 1 5 5 C 1.42896 * 113.99970 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47241 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00049 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00250 * 179.97438 * 6 5 4 9 9 C 1.39126 * 120.00085 * 185.72390 * 8 6 5 10 10 C 1.38649 * 120.28330 * 19.25536 * 9 8 6 11 11 C 1.38220 * 120.02955 * 180.25397 * 10 9 8 12 12 C 1.38863 * 120.62073 * 359.73829 * 11 10 9 13 13 C 1.36461 * 120.57369 * 359.97438 * 12 11 10 14 14 C 1.40734 * 119.94536 * 0.02562 * 13 12 11 15 15 C 1.41077 * 120.30202 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99861 * 206.47471 * 15 14 13 17 17 C 1.39952 * 119.99806 * 26.47517 * 15 14 13 18 18 N 1.30849 * 120.00014 * 201.35691 * 17 15 14 19 19 Si 1.86807 * 120.00193 * 21.35800 * 17 15 14 20 20 H 1.48498 * 109.47052 * 270.00029 * 19 17 15 21 21 H 1.48500 * 109.46919 * 29.99659 * 19 17 15 22 22 H 1.48495 * 109.47110 * 149.99484 * 19 17 15 23 23 H 1.09001 * 109.46777 * 60.00050 * 1 2 3 24 24 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46912 * 300.00309 * 1 2 3 26 26 H 1.09007 * 109.47216 * 240.00149 * 2 1 3 27 27 H 1.09003 * 109.47276 * 120.00062 * 2 1 3 28 28 H 1.09000 * 109.46563 * 59.99900 * 3 2 1 29 29 H 1.09003 * 109.47070 * 300.00188 * 3 2 1 30 30 H 1.09000 * 109.47582 * 59.99317 * 5 4 3 31 31 H 1.09005 * 109.46920 * 299.99793 * 5 4 3 32 32 H 0.96996 * 119.99619 * 5.73325 * 8 6 5 33 33 H 1.08004 * 119.98472 * 359.96424 * 10 9 8 34 34 H 1.08003 * 119.69134 * 179.75574 * 11 10 9 35 35 H 1.07996 * 119.71424 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.03062 * 180.02562 * 13 12 11 37 37 H 0.96998 * 120.00180 * 354.94268 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5525 2.6290 -0.0001 7 8 6.0742 1.5340 -0.0011 8 7 6.3165 3.7393 -0.0002 9 6 7.6985 3.6328 -0.1204 10 6 8.2690 2.4765 -0.6301 11 6 9.6428 2.3743 -0.7423 12 6 10.4642 3.4242 -0.3536 13 6 9.9292 4.5760 0.1458 14 6 8.5334 4.7058 0.2706 15 6 7.9722 5.8929 0.7864 16 1 7.0100 5.8669 1.2762 17 6 8.6624 7.1042 0.6634 18 7 8.3858 8.0993 1.4668 19 14 9.9784 7.3004 -0.6479 20 1 11.2943 6.8929 -0.0933 21 1 9.6462 6.4438 -1.8146 22 1 10.0407 8.7203 -1.0781 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.7290 3.2884 0.8903 31 1 3.7283 3.2894 -0.8897 32 1 5.9028 4.6126 0.0837 33 1 7.6398 1.6533 -0.9351 34 1 10.0815 1.4695 -1.1364 35 1 11.5358 3.3288 -0.4480 36 1 10.5763 5.3872 0.4451 37 1 7.6536 8.0236 2.0984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339168389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:42 Heat of formation + Delta-G solvation = -70.042942 kcal Electronic energy + Delta-G solvation = -19194.606833 eV Core-core repulsion = 16129.488821 eV Total energy + Delta-G solvation = -3065.118013 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83926 -38.12574 -37.09480 -33.96764 -33.85186 -33.72073 -30.25699 -29.57641 -27.56507 -25.69168 -24.65157 -22.18931 -21.74321 -20.59760 -19.61507 -18.25013 -17.06745 -16.92196 -16.54030 -15.89457 -15.14777 -14.90912 -14.53908 -14.15337 -13.89807 -13.50184 -13.26069 -12.82622 -12.57618 -12.32361 -12.25310 -12.20447 -11.97875 -11.58753 -11.10232 -11.06450 -10.92022 -10.80671 -10.51424 -9.89062 -9.74467 -9.70964 -9.48415 -9.11564 -8.76947 -7.76701 -7.39804 -7.02709 -4.57223 2.38943 2.70049 3.10492 3.17624 3.20760 3.36354 3.52404 3.96640 4.17928 4.51384 4.75105 4.83066 5.03864 5.13388 5.19162 5.20083 5.28419 5.29920 5.40231 5.51207 5.74829 5.92170 6.00826 6.11156 6.21414 6.38001 6.64647 6.80582 7.00205 7.02508 7.32566 7.35421 7.49664 7.67166 7.83449 7.90451 8.20430 8.32629 8.47052 8.66705 8.83079 9.92297 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.004423 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.551273 B = 6328.416086 C = 7141.216051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.059 3.941 4 O -0.363 6.363 5 C 0.048 3.952 6 C 0.496 3.504 7 O -0.517 6.517 8 N -0.635 5.635 9 C 0.024 3.976 10 C -0.092 4.092 11 C -0.229 4.229 12 C -0.087 4.087 13 C -0.234 4.234 14 C 0.087 3.913 15 C -0.525 4.525 16 H 0.074 0.926 17 C 0.046 3.954 18 N -0.813 5.813 19 Si 1.075 2.925 20 H -0.275 1.275 21 H -0.263 1.263 22 H -0.291 1.291 23 H 0.055 0.945 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.406 0.594 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.167 -6.108 -3.371 13.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.018 4.018 4 O -0.281 6.281 5 C -0.033 4.033 6 C 0.282 3.718 7 O -0.394 6.394 8 N -0.278 5.278 9 C -0.069 4.069 10 C -0.113 4.113 11 C -0.249 4.249 12 C -0.106 4.106 13 C -0.254 4.254 14 C 0.082 3.918 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.174 4.174 18 N -0.435 5.435 19 Si 0.901 3.099 20 H -0.202 1.202 21 H -0.188 1.188 22 H -0.218 1.218 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.242 0.758 33 H 0.149 0.851 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.127 0.873 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.692 -5.942 -3.883 12.013 hybrid contribution -1.613 -0.217 0.943 1.881 sum -11.305 -6.159 -2.940 13.206 Atomic orbital electron populations 1.21695 0.94808 1.02176 1.01940 1.21448 0.95449 0.95571 1.03671 1.22617 0.80944 0.98097 1.00146 1.88003 1.19158 1.25536 1.95414 1.22172 0.92209 0.86523 1.02352 1.20145 0.88262 0.84871 0.78511 1.90597 1.73739 1.26791 1.48242 1.42823 1.06132 1.08797 1.70060 1.17719 0.80858 0.98678 1.09683 1.21188 0.95061 0.97051 0.97955 1.20361 0.93192 0.99224 1.12123 1.20397 0.97764 0.93944 0.98514 1.20709 0.94289 0.99026 1.11376 1.17474 0.91163 0.92572 0.90552 1.20359 1.06967 0.93050 1.35003 0.90756 1.27255 1.00299 0.91991 0.97816 1.70569 1.23935 1.35272 1.13694 0.83571 0.74983 0.75446 0.75908 1.20218 1.18760 1.21819 0.92566 0.92045 0.92560 0.90975 0.90978 0.93280 0.93277 0.90559 0.90417 0.75800 0.85139 0.88576 0.88740 0.87346 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.12 -1.20 6.30 -26.73 -0.17 -1.37 16 3 C 0.06 0.64 5.94 37.16 0.22 0.86 16 4 O -0.36 -5.59 9.88 -55.14 -0.54 -6.13 16 5 C 0.05 0.68 6.42 36.00 0.23 0.91 16 6 C 0.50 9.59 7.75 -10.99 -0.09 9.51 16 7 O -0.52 -11.94 13.38 -14.36 -0.19 -12.13 16 8 N -0.63 -12.87 5.18 -9.48 -0.05 -12.92 16 9 C 0.02 0.58 6.54 -83.17 -0.54 0.04 16 10 C -0.09 -2.19 8.78 -39.44 -0.35 -2.54 16 11 C -0.23 -5.14 10.04 -39.36 -0.39 -5.53 16 12 C -0.09 -1.95 9.97 -39.99 -0.40 -2.35 16 13 C -0.23 -5.67 7.33 -39.28 -0.29 -5.96 16 14 C 0.09 2.17 5.18 -106.65 -0.55 1.62 16 15 C -0.53 -13.26 8.75 -37.86 -0.33 -13.59 16 16 H 0.07 1.86 7.20 -52.49 -0.38 1.49 16 17 C 0.05 1.17 5.38 -17.33 -0.09 1.07 16 18 N -0.81 -20.88 13.66 55.55 0.76 -20.12 16 19 Si 1.07 23.62 25.01 -169.99 -4.25 19.36 16 20 H -0.28 -5.82 6.37 56.52 0.36 -5.46 16 21 H -0.26 -5.77 7.10 56.52 0.40 -5.37 16 22 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.41 7.35 7.33 -40.82 -0.30 7.05 16 33 H 0.13 3.11 5.39 -52.48 -0.28 2.83 16 34 H 0.10 1.91 8.06 -52.48 -0.42 1.48 16 35 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.11 2.57 4.35 -52.49 -0.23 2.34 16 37 H 0.29 7.11 8.73 -40.82 -0.36 6.75 16 LS Contribution 308.36 15.07 4.65 4.65 Total: -1.00 -30.02 308.36 -7.05 -37.07 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.03 Total: 8.26 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: -2.38 Total: -18.04 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.71 Total: -33.03 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.74 Total: -18.27 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -4.25 Total: 19.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.02 -7.05 -37.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339168389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.976 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds