Wall clock time and date at job start Mon Mar 30 2020 00:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.47173 * 2 1 4 4 O 1.42904 * 109.47096 * 180.02562 * 3 2 1 5 5 C 1.42896 * 113.99970 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47241 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00049 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00250 * 179.97438 * 6 5 4 9 9 C 1.39126 * 120.00085 * 185.72390 * 8 6 5 10 10 C 1.38649 * 120.28330 * 19.25536 * 9 8 6 11 11 C 1.38220 * 120.02955 * 180.25397 * 10 9 8 12 12 C 1.38863 * 120.62073 * 359.73829 * 11 10 9 13 13 C 1.36461 * 120.57369 * 359.97438 * 12 11 10 14 14 C 1.40734 * 119.94536 * 0.02562 * 13 12 11 15 15 C 1.41077 * 120.30202 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99861 * 206.47471 * 15 14 13 17 17 C 1.39952 * 119.99806 * 26.47517 * 15 14 13 18 18 N 1.30849 * 120.00014 * 201.35691 * 17 15 14 19 19 Si 1.86807 * 120.00193 * 21.35800 * 17 15 14 20 20 H 1.48498 * 109.47052 * 270.00029 * 19 17 15 21 21 H 1.48500 * 109.46919 * 29.99659 * 19 17 15 22 22 H 1.48495 * 109.47110 * 149.99484 * 19 17 15 23 23 H 1.09001 * 109.46777 * 60.00050 * 1 2 3 24 24 H 1.09001 * 109.46962 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46912 * 300.00309 * 1 2 3 26 26 H 1.09007 * 109.47216 * 240.00149 * 2 1 3 27 27 H 1.09003 * 109.47276 * 120.00062 * 2 1 3 28 28 H 1.09000 * 109.46563 * 59.99900 * 3 2 1 29 29 H 1.09003 * 109.47070 * 300.00188 * 3 2 1 30 30 H 1.09000 * 109.47582 * 59.99317 * 5 4 3 31 31 H 1.09005 * 109.46920 * 299.99793 * 5 4 3 32 32 H 0.96996 * 119.99619 * 5.73325 * 8 6 5 33 33 H 1.08004 * 119.98472 * 359.96424 * 10 9 8 34 34 H 1.08003 * 119.69134 * 179.75574 * 11 10 9 35 35 H 1.07996 * 119.71424 * 180.02562 * 12 11 10 36 36 H 1.08002 * 120.03062 * 180.02562 * 13 12 11 37 37 H 0.96998 * 120.00180 * 354.94268 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0503 2.7479 -0.0001 6 6 5.5525 2.6290 -0.0001 7 8 6.0742 1.5340 -0.0011 8 7 6.3165 3.7393 -0.0002 9 6 7.6985 3.6328 -0.1204 10 6 8.2690 2.4765 -0.6301 11 6 9.6428 2.3743 -0.7423 12 6 10.4642 3.4242 -0.3536 13 6 9.9292 4.5760 0.1458 14 6 8.5334 4.7058 0.2706 15 6 7.9722 5.8929 0.7864 16 1 7.0100 5.8669 1.2762 17 6 8.6624 7.1042 0.6634 18 7 8.3858 8.0993 1.4668 19 14 9.9784 7.3004 -0.6479 20 1 11.2943 6.8929 -0.0933 21 1 9.6462 6.4438 -1.8146 22 1 10.0407 8.7203 -1.0781 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9564 -0.8900 30 1 3.7290 3.2884 0.8903 31 1 3.7283 3.2894 -0.8897 32 1 5.9028 4.6126 0.0837 33 1 7.6398 1.6533 -0.9351 34 1 10.0815 1.4695 -1.1364 35 1 11.5358 3.3288 -0.4480 36 1 10.5763 5.3872 0.4451 37 1 7.6536 8.0236 2.0984 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339168389.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:42 Heat of formation + Delta-G solvation = -88.342861 kcal Electronic energy + Delta-G solvation = -19195.400377 eV Core-core repulsion = 16129.488821 eV Total energy + Delta-G solvation = -3065.911557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43856 -39.50109 -38.55360 -35.70886 -35.57213 -34.60669 -32.11344 -31.12333 -28.88274 -26.78770 -26.28425 -23.91865 -22.57856 -22.27233 -21.23927 -20.12530 -18.66031 -18.24518 -17.56432 -17.25926 -16.66822 -16.27265 -16.06453 -15.72811 -15.28337 -14.84423 -14.67574 -14.40473 -14.32858 -13.92051 -13.52354 -13.10898 -13.05756 -12.89922 -12.67944 -12.54513 -12.25821 -11.85753 -11.80895 -11.68758 -11.46878 -11.23607 -10.92338 -10.71928 -10.45198 -9.64821 -9.29725 -8.82369 -6.49307 0.64756 0.83867 1.41785 1.54226 1.68756 1.80491 1.86862 2.19807 2.64820 3.00467 3.51177 3.67336 4.01294 4.06539 4.16707 4.21200 4.35350 4.39956 4.45904 4.53988 4.62793 4.67449 4.84149 4.87362 4.99046 5.14406 5.21674 5.22557 5.33843 5.43953 5.55154 5.64105 5.88692 6.01460 6.03715 6.09693 6.38184 6.58837 6.65852 6.85246 7.23285 8.00636 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.004423 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.551273 B = 6328.416086 C = 7141.216051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.125 4.125 3 C 0.052 3.948 4 O -0.398 6.398 5 C 0.057 3.943 6 C 0.492 3.508 7 O -0.558 6.558 8 N -0.635 5.635 9 C 0.018 3.982 10 C -0.112 4.112 11 C -0.223 4.223 12 C -0.091 4.091 13 C -0.247 4.247 14 C 0.064 3.936 15 C -0.541 4.541 16 H 0.064 0.936 17 C 0.020 3.980 18 N -0.835 5.835 19 Si 1.101 2.899 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.282 1.282 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.415 0.585 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.618 -6.495 -4.145 13.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.163 4.163 3 C -0.023 4.023 4 O -0.317 6.317 5 C -0.023 4.023 6 C 0.281 3.719 7 O -0.438 6.438 8 N -0.279 5.279 9 C -0.076 4.076 10 C -0.132 4.132 11 C -0.242 4.242 12 C -0.110 4.110 13 C -0.267 4.267 14 C 0.059 3.941 15 C -0.571 4.571 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.459 5.459 19 Si 0.923 3.077 20 H -0.187 1.187 21 H -0.190 1.190 22 H -0.209 1.209 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.252 0.748 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.175 -6.318 -4.646 12.847 hybrid contribution -1.525 -0.272 1.169 1.941 sum -11.700 -6.590 -3.477 13.871 Atomic orbital electron populations 1.21664 0.92648 1.02972 1.02744 1.21491 0.97245 0.94932 1.02637 1.22889 0.78648 0.99038 1.01764 1.87962 1.21760 1.26204 1.95779 1.22168 0.88073 0.86901 1.05141 1.21113 0.90464 0.83725 0.76578 1.90565 1.75064 1.28222 1.49924 1.42883 1.05166 1.09806 1.70050 1.17969 0.82575 0.98341 1.08762 1.21364 0.95966 0.97042 0.98874 1.20771 0.92787 1.00183 1.10458 1.20749 0.99697 0.92989 0.97567 1.20935 0.94101 0.99979 1.11684 1.17686 0.92039 0.92904 0.91428 1.20354 1.07010 0.93660 1.36042 0.91825 1.28089 1.01405 0.91680 0.98412 1.70626 1.24695 1.35831 1.14715 0.83234 0.74234 0.75835 0.74378 1.18699 1.18973 1.20880 0.91670 0.91327 0.91805 0.91959 0.92157 0.91716 0.91442 0.87807 0.87192 0.74754 0.85554 0.85835 0.85220 0.87107 0.90811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.13 -2.29 6.30 30.60 0.19 -2.10 16 3 C 0.05 1.03 5.94 71.98 0.43 1.46 16 4 O -0.40 -11.71 9.88 -129.94 -1.28 -12.99 16 5 C 0.06 1.50 6.42 71.23 0.46 1.96 16 6 C 0.49 18.78 7.75 87.65 0.68 19.46 16 7 O -0.56 -25.92 13.38 16.00 0.21 -25.70 16 8 N -0.64 -25.59 5.18 -302.28 -1.57 -27.16 16 9 C 0.02 0.87 6.54 38.88 0.25 1.13 16 10 C -0.11 -5.24 8.78 22.36 0.20 -5.05 16 11 C -0.22 -9.51 10.04 22.42 0.22 -9.29 16 12 C -0.09 -3.87 9.97 22.00 0.22 -3.65 16 13 C -0.25 -11.67 7.33 22.46 0.16 -11.50 16 14 C 0.06 3.17 5.18 -21.18 -0.11 3.06 16 15 C -0.54 -27.62 8.75 23.38 0.20 -27.42 16 16 H 0.06 3.27 7.20 -2.91 -0.02 3.25 16 17 C 0.02 0.99 5.38 85.25 0.46 1.45 16 18 N -0.84 -43.28 13.66 21.83 0.30 -42.99 16 19 Si 1.10 46.80 25.01 68.60 1.72 48.52 16 20 H -0.26 -10.42 6.37 99.48 0.63 -9.79 16 21 H -0.27 -11.25 7.10 99.48 0.71 -10.54 16 22 H -0.28 -11.48 7.11 99.48 0.71 -10.77 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.11 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.42 14.94 7.33 -92.71 -0.68 14.26 16 33 H 0.13 6.02 5.39 -2.91 -0.02 6.01 16 34 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.48 16 36 H 0.11 5.10 4.35 -2.91 -0.01 5.09 16 37 H 0.28 14.28 8.73 -92.71 -0.81 13.47 16 Total: -1.00 -64.67 308.36 3.75 -60.92 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: 0.29 Total: 30.93 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: 4.08 Total: -31.53 kcal Atomic # 7 Polarization: -68.88 SS G_CDS: -1.27 Total: -70.14 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.07 Total: -38.69 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.72 Total: 48.52 kcal Total: -64.67 3.75 -60.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339168389.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.426 kcal (2) G-P(sol) polarization free energy of solvation -64.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds