Wall clock time and date at job start Sun Mar 29 2020 23:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47610 * 2 1 4 4 H 1.09006 * 109.46873 * 304.17728 * 3 2 1 5 5 O 1.42901 * 109.47016 * 64.17371 * 3 2 1 6 6 C 1.42903 * 113.99852 * 255.89780 * 5 3 2 7 7 C 1.50699 * 109.47623 * 184.17670 * 3 2 1 8 8 O 1.21276 * 119.99930 * 245.00385 * 7 3 2 9 9 N 1.34780 * 119.99557 * 64.99721 * 7 3 2 10 10 C 1.39129 * 119.99425 * 185.59026 * 9 7 3 11 11 C 1.38646 * 120.28482 * 21.75860 * 10 9 7 12 12 C 1.38223 * 120.03257 * 179.97438 * 11 10 9 13 13 C 1.38865 * 120.61755 * 0.04655 * 12 11 10 14 14 C 1.36468 * 120.57424 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94556 * 359.65953 * 14 13 12 16 16 C 1.41068 * 120.30435 * 180.33974 * 15 14 13 17 17 H 1.08003 * 120.00188 * 207.56577 * 16 15 14 18 18 C 1.39960 * 119.99891 * 27.56641 * 16 15 14 19 19 N 1.30846 * 119.99970 * 11.61178 * 18 16 15 20 20 Si 1.86802 * 119.99828 * 191.60636 * 18 16 15 21 21 H 1.48503 * 109.46736 * 90.00559 * 20 18 16 22 22 H 1.48503 * 109.46913 * 209.99849 * 20 18 16 23 23 H 1.48495 * 109.47420 * 330.00392 * 20 18 16 24 24 H 1.08999 * 109.46814 * 302.01374 * 1 2 3 25 25 H 1.09002 * 109.47077 * 182.01641 * 1 2 3 26 26 H 1.09000 * 109.46904 * 62.01611 * 1 2 3 27 27 H 1.09005 * 109.47032 * 120.00330 * 2 1 3 28 28 H 1.09001 * 109.46916 * 239.99651 * 2 1 3 29 29 H 1.08998 * 109.47320 * 294.69930 * 6 5 3 30 30 H 1.09002 * 109.47146 * 54.70391 * 6 5 3 31 31 H 1.09001 * 109.46632 * 174.69981 * 6 5 3 32 32 H 0.96992 * 120.00524 * 5.58768 * 9 7 3 33 33 H 1.08000 * 119.98439 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.69213 * 180.02562 * 12 11 10 35 35 H 1.07994 * 119.71485 * 179.97438 * 13 12 11 36 36 H 1.08000 * 120.02766 * 179.97438 * 14 13 12 37 37 H 0.97000 * 120.00372 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6169 1.9774 -0.8502 5 8 1.6456 2.0872 1.2127 6 6 0.5542 2.9967 1.0589 7 6 3.5435 1.4437 -0.1035 8 8 4.2142 1.8648 0.8150 9 7 4.1427 0.9767 -1.2168 10 6 5.5289 0.8692 -1.2677 11 6 6.2680 0.7970 -0.0969 12 6 7.6449 0.6897 -0.1536 13 6 8.3018 0.6541 -1.3765 14 6 7.5991 0.7239 -2.5442 15 6 6.1958 0.8258 -2.5146 16 6 5.4613 0.8912 -3.7172 17 1 4.5062 1.3949 -3.7399 18 6 5.9702 0.3032 -4.8809 19 7 7.0040 -0.4959 -4.8118 20 14 5.1735 0.6593 -6.5325 21 1 5.8192 1.8466 -7.1478 22 1 5.3418 -0.5145 -7.4265 23 1 3.7264 0.9287 -6.3363 24 1 -0.3633 0.5448 0.8714 25 1 -0.3633 -1.0270 0.0362 26 1 -0.3633 0.4822 -0.9075 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.8620 3.8304 0.4278 30 1 -0.2863 2.4806 0.5948 31 1 0.2542 3.3729 2.0370 32 1 3.6076 0.7156 -1.9825 33 1 5.7677 0.8237 0.8598 34 1 8.2152 0.6334 0.7619 35 1 9.3782 0.5704 -1.4037 36 1 8.1190 0.6958 -3.4904 37 1 7.3566 -0.9037 -5.6183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339173261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:43 Heat of formation + Delta-G solvation = -64.605124 kcal Electronic energy + Delta-G solvation = -19868.966291 eV Core-core repulsion = 16804.084080 eV Total energy + Delta-G solvation = -3064.882211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.90518 -38.06744 -36.76206 -33.96489 -33.67071 -33.06515 -29.61976 -29.08026 -27.69148 -25.75647 -25.03507 -22.30436 -21.52180 -20.67369 -19.34841 -17.51427 -16.99676 -16.91074 -15.91504 -15.46175 -15.14122 -14.63489 -14.19410 -14.03185 -13.91974 -13.29736 -12.98198 -12.71341 -12.62251 -12.20526 -11.98622 -11.78288 -11.60347 -11.38762 -11.35374 -11.20517 -10.95613 -10.77668 -10.51728 -10.11477 -9.76468 -9.70687 -9.30537 -9.28376 -8.55690 -7.37847 -6.95827 -6.65835 -4.40858 2.58356 2.84941 3.02106 3.03228 3.20408 3.39156 3.47165 3.86165 4.24587 4.62396 4.84347 4.88905 5.11963 5.21162 5.24806 5.35818 5.53580 5.60365 5.65714 5.69227 5.88801 6.01535 6.18803 6.36873 6.53972 6.63219 6.87020 7.04233 7.09833 7.19653 7.29782 7.64383 7.73008 7.99297 8.10902 8.12425 8.43848 8.56122 8.81318 8.83174 9.03051 10.15652 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.006455 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.860834 B = 4336.753674 C = 5509.994610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.137 4.137 3 C 0.075 3.925 4 H 0.084 0.916 5 O -0.357 6.357 6 C 0.025 3.975 7 C 0.489 3.511 8 O -0.519 6.519 9 N -0.633 5.633 10 C 0.021 3.979 11 C -0.103 4.103 12 C -0.220 4.220 13 C -0.118 4.118 14 C -0.146 4.146 15 C 0.097 3.903 16 C -0.469 4.469 17 H 0.074 0.926 18 C 0.076 3.924 19 N -0.797 5.797 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.264 1.264 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.404 0.596 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.345 1.198 2.411 11.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.175 4.175 3 C 0.014 3.986 4 H 0.102 0.898 5 O -0.274 6.274 6 C -0.071 4.071 7 C 0.275 3.725 8 O -0.396 6.396 9 N -0.276 5.276 10 C -0.073 4.073 11 C -0.123 4.123 12 C -0.240 4.240 13 C -0.137 4.137 14 C -0.166 4.166 15 C 0.093 3.907 16 C -0.500 4.500 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.423 5.423 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.239 0.761 33 H 0.139 0.861 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.686 1.301 3.111 11.206 hybrid contribution -0.677 0.036 -1.505 1.651 sum -11.364 1.337 1.606 11.554 Atomic orbital electron populations 1.21819 0.95120 1.02185 1.01802 1.21929 0.96683 0.94934 1.03961 1.22008 0.92711 0.94978 0.88949 0.89794 1.88023 1.51161 1.58746 1.29454 1.22959 0.89071 0.92452 1.02658 1.20490 0.89490 0.79063 0.83451 1.90609 1.64998 1.45294 1.38673 1.42897 1.06823 1.61879 1.16048 1.17812 0.80761 1.14211 0.94472 1.20930 0.93775 1.00581 0.97059 1.20359 0.93891 1.13551 0.96178 1.20492 0.97700 1.02140 0.93384 1.20953 0.93418 1.05056 0.97168 1.17362 0.92144 0.91032 0.90155 1.19281 1.05402 1.32190 0.93094 0.90812 1.25840 0.94473 0.92850 1.00925 1.69798 1.20415 1.21368 1.30692 0.86294 0.80345 0.78829 0.81101 1.19365 1.20293 1.18764 0.92157 0.92191 0.92729 0.90397 0.90060 0.94007 0.93676 0.89516 0.76064 0.86056 0.89194 0.89407 0.85846 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.09 37.16 0.34 -1.15 16 2 C -0.14 -1.73 5.61 -26.73 -0.15 -1.88 16 3 C 0.08 1.12 2.68 -27.88 -0.07 1.04 16 4 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 5 O -0.36 -5.54 9.55 -55.09 -0.53 -6.06 16 6 C 0.03 0.27 10.29 101.05 1.04 1.31 16 7 C 0.49 9.71 7.00 -10.98 -0.08 9.63 16 8 O -0.52 -12.33 13.51 -14.30 -0.19 -12.52 16 9 N -0.63 -13.05 5.05 -9.47 -0.05 -13.10 16 10 C 0.02 0.52 6.51 -83.17 -0.54 -0.02 16 11 C -0.10 -2.57 8.75 -39.44 -0.34 -2.91 16 12 C -0.22 -5.26 10.04 -39.36 -0.39 -5.66 16 13 C -0.12 -2.85 9.97 -39.99 -0.40 -3.25 16 14 C -0.15 -3.78 8.61 -39.28 -0.34 -4.12 16 15 C 0.10 2.51 5.57 -106.65 -0.59 1.91 16 16 C -0.47 -11.61 8.37 -37.86 -0.32 -11.93 16 17 H 0.07 1.70 7.10 -52.48 -0.37 1.33 16 18 C 0.08 1.82 5.25 -17.33 -0.09 1.73 16 19 N -0.80 -19.81 10.80 55.55 0.60 -19.21 16 20 Si 0.91 17.75 29.58 -169.99 -5.03 12.72 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 23 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 24 H 0.06 0.58 6.37 -51.93 -0.33 0.25 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.08 0.99 7.98 -51.93 -0.41 0.57 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.39 6.27 -51.93 -0.33 0.07 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.40 7.38 7.34 -40.82 -0.30 7.08 16 33 H 0.12 3.03 5.57 -52.49 -0.29 2.74 16 34 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.26 6.15 -52.49 -0.32 2.94 16 37 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -30.05 307.11 -7.36 -37.41 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.85 Total: 11.42 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.94 Total: -15.28 kcal Atomic # 7 Polarization: -32.86 SS G_CDS: 0.55 Total: -32.30 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.72 Total: -18.59 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.05 -7.36 -37.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339173261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.197 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds