Wall clock time and date at job start Sun Mar 29 2020 23:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47610 * 2 1 4 4 H 1.09006 * 109.46873 * 304.17728 * 3 2 1 5 5 O 1.42901 * 109.47016 * 64.17371 * 3 2 1 6 6 C 1.42903 * 113.99852 * 255.89780 * 5 3 2 7 7 C 1.50699 * 109.47623 * 184.17670 * 3 2 1 8 8 O 1.21276 * 119.99930 * 245.00385 * 7 3 2 9 9 N 1.34780 * 119.99557 * 64.99721 * 7 3 2 10 10 C 1.39129 * 119.99425 * 185.59026 * 9 7 3 11 11 C 1.38646 * 120.28482 * 21.75860 * 10 9 7 12 12 C 1.38223 * 120.03257 * 179.97438 * 11 10 9 13 13 C 1.38865 * 120.61755 * 0.04655 * 12 11 10 14 14 C 1.36468 * 120.57424 * 359.97438 * 13 12 11 15 15 C 1.40734 * 119.94556 * 359.65953 * 14 13 12 16 16 C 1.41068 * 120.30435 * 180.33974 * 15 14 13 17 17 H 1.08003 * 120.00188 * 207.56577 * 16 15 14 18 18 C 1.39960 * 119.99891 * 27.56641 * 16 15 14 19 19 N 1.30846 * 119.99970 * 11.61178 * 18 16 15 20 20 Si 1.86802 * 119.99828 * 191.60636 * 18 16 15 21 21 H 1.48503 * 109.46736 * 90.00559 * 20 18 16 22 22 H 1.48503 * 109.46913 * 209.99849 * 20 18 16 23 23 H 1.48495 * 109.47420 * 330.00392 * 20 18 16 24 24 H 1.08999 * 109.46814 * 302.01374 * 1 2 3 25 25 H 1.09002 * 109.47077 * 182.01641 * 1 2 3 26 26 H 1.09000 * 109.46904 * 62.01611 * 1 2 3 27 27 H 1.09005 * 109.47032 * 120.00330 * 2 1 3 28 28 H 1.09001 * 109.46916 * 239.99651 * 2 1 3 29 29 H 1.08998 * 109.47320 * 294.69930 * 6 5 3 30 30 H 1.09002 * 109.47146 * 54.70391 * 6 5 3 31 31 H 1.09001 * 109.46632 * 174.69981 * 6 5 3 32 32 H 0.96992 * 120.00524 * 5.58768 * 9 7 3 33 33 H 1.08000 * 119.98439 * 0.02562 * 11 10 9 34 34 H 1.08000 * 119.69213 * 180.02562 * 12 11 10 35 35 H 1.07994 * 119.71485 * 179.97438 * 13 12 11 36 36 H 1.08000 * 120.02766 * 179.97438 * 14 13 12 37 37 H 0.97000 * 120.00372 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6169 1.9774 -0.8502 5 8 1.6456 2.0872 1.2127 6 6 0.5542 2.9967 1.0589 7 6 3.5435 1.4437 -0.1035 8 8 4.2142 1.8648 0.8150 9 7 4.1427 0.9767 -1.2168 10 6 5.5289 0.8692 -1.2677 11 6 6.2680 0.7970 -0.0969 12 6 7.6449 0.6897 -0.1536 13 6 8.3018 0.6541 -1.3765 14 6 7.5991 0.7239 -2.5442 15 6 6.1958 0.8258 -2.5146 16 6 5.4613 0.8912 -3.7172 17 1 4.5062 1.3949 -3.7399 18 6 5.9702 0.3032 -4.8809 19 7 7.0040 -0.4959 -4.8118 20 14 5.1735 0.6593 -6.5325 21 1 5.8192 1.8466 -7.1478 22 1 5.3418 -0.5145 -7.4265 23 1 3.7264 0.9287 -6.3363 24 1 -0.3633 0.5448 0.8714 25 1 -0.3633 -1.0270 0.0362 26 1 -0.3633 0.4822 -0.9075 27 1 1.8933 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 0.8620 3.8304 0.4278 30 1 -0.2863 2.4806 0.5948 31 1 0.2542 3.3729 2.0370 32 1 3.6076 0.7156 -1.9825 33 1 5.7677 0.8237 0.8598 34 1 8.2152 0.6334 0.7619 35 1 9.3782 0.5704 -1.4037 36 1 8.1190 0.6958 -3.4904 37 1 7.3566 -0.9037 -5.6183 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339173261.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:42 Heat of formation + Delta-G solvation = -82.233813 kcal Electronic energy + Delta-G solvation = -19869.730728 eV Core-core repulsion = 16804.084080 eV Total energy + Delta-G solvation = -3065.646648 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.46860 -39.52364 -38.35290 -35.60561 -35.51420 -34.17327 -31.50359 -30.65201 -28.94526 -27.21780 -26.46800 -23.68823 -23.07378 -22.34463 -20.98934 -19.28244 -18.64903 -18.20558 -17.33976 -16.99483 -16.51046 -16.15358 -15.78847 -15.55276 -15.01727 -14.76484 -14.49365 -14.24948 -14.06025 -13.62393 -13.41516 -13.19819 -12.95318 -12.85751 -12.76803 -12.54865 -12.26209 -12.11703 -11.93640 -11.71289 -11.53476 -11.13862 -11.07893 -10.87325 -10.15377 -9.32280 -8.80261 -8.48362 -6.30691 0.80749 1.04850 1.43461 1.54920 1.55975 1.79858 2.06539 2.22728 2.79217 3.04754 3.67785 3.73095 3.83141 3.94581 4.32522 4.42331 4.51927 4.54530 4.58343 4.64939 4.76795 4.82122 4.84711 5.05425 5.08241 5.14622 5.21400 5.29808 5.37412 5.44092 5.78193 5.82351 6.04286 6.16740 6.20151 6.25325 6.65820 6.73402 6.95558 7.00447 7.36201 8.37918 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.006455 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.860834 B = 4336.753674 C = 5509.994610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.085 3.915 4 H 0.114 0.886 5 O -0.387 6.387 6 C 0.017 3.983 7 C 0.485 3.515 8 O -0.564 6.564 9 N -0.629 5.629 10 C 0.014 3.986 11 C -0.121 4.121 12 C -0.227 4.227 13 C -0.122 4.122 14 C -0.170 4.170 15 C 0.070 3.930 16 C -0.488 4.488 17 H 0.086 0.914 18 C 0.036 3.964 19 N -0.827 5.827 20 Si 0.984 3.016 21 H -0.269 1.269 22 H -0.273 1.273 23 H -0.249 1.249 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.414 0.586 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.623 1.373 1.285 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C 0.024 3.976 4 H 0.132 0.868 5 O -0.305 6.305 6 C -0.078 4.078 7 C 0.273 3.727 8 O -0.443 6.443 9 N -0.273 5.273 10 C -0.081 4.081 11 C -0.141 4.141 12 C -0.247 4.247 13 C -0.141 4.141 14 C -0.190 4.190 15 C 0.067 3.933 16 C -0.518 4.518 17 H 0.104 0.896 18 C -0.179 4.179 19 N -0.454 5.454 20 Si 0.805 3.195 21 H -0.194 1.194 22 H -0.197 1.197 23 H -0.172 1.172 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.252 0.748 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.995 1.472 1.990 13.229 hybrid contribution 0.050 -0.006 -1.088 1.089 sum -12.945 1.466 0.902 13.059 Atomic orbital electron populations 1.21793 0.92379 1.03306 1.02821 1.21929 0.98960 0.93029 1.03288 1.22004 0.88621 0.96903 0.90069 0.86812 1.87991 1.52892 1.59703 1.29914 1.23226 0.88552 0.92069 1.03996 1.21543 0.91812 0.77255 0.82109 1.90574 1.66644 1.47082 1.39987 1.42890 1.05510 1.61911 1.16985 1.17967 0.82695 1.13408 0.94006 1.21079 0.94476 1.01467 0.97068 1.20640 0.93896 1.13075 0.97083 1.20721 0.98948 1.01503 0.92910 1.21006 0.93922 1.06790 0.97298 1.17717 0.92591 0.91769 0.91270 1.19571 1.06059 1.32742 0.93429 0.89634 1.26729 0.94787 0.91995 1.04358 1.69870 1.21551 1.21841 1.32103 0.85166 0.79924 0.78466 0.75972 1.19439 1.19737 1.17245 0.91923 0.91044 0.90921 0.92209 0.89705 0.93770 0.91036 0.88177 0.74799 0.86623 0.87017 0.87072 0.87013 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.09 71.98 0.65 -1.72 16 2 C -0.13 -3.15 5.61 30.59 0.17 -2.97 16 3 C 0.09 2.40 2.68 29.85 0.08 2.48 16 4 H 0.11 2.50 7.67 -2.38 -0.02 2.49 16 5 O -0.39 -11.49 9.55 -129.99 -1.24 -12.73 16 6 C 0.02 0.33 10.29 113.37 1.17 1.50 16 7 C 0.48 19.23 7.00 87.66 0.61 19.84 16 8 O -0.56 -27.35 13.51 15.97 0.22 -27.13 16 9 N -0.63 -25.97 5.05 -302.28 -1.53 -27.50 16 10 C 0.01 0.70 6.51 38.88 0.25 0.96 16 11 C -0.12 -6.14 8.75 22.36 0.20 -5.94 16 12 C -0.23 -10.99 10.04 22.42 0.22 -10.76 16 13 C -0.12 -5.95 9.97 22.01 0.22 -5.73 16 14 C -0.17 -9.00 8.61 22.47 0.19 -8.81 16 15 C 0.07 3.71 5.57 -21.18 -0.12 3.59 16 16 C -0.49 -24.13 8.37 23.38 0.20 -23.93 16 17 H 0.09 3.88 7.10 -2.91 -0.02 3.86 16 18 C 0.04 1.69 5.25 85.26 0.45 2.14 16 19 N -0.83 -41.31 10.80 21.83 0.24 -41.08 16 20 Si 0.98 35.31 29.58 68.60 2.03 37.34 16 21 H -0.27 -9.66 7.11 99.48 0.71 -8.96 16 22 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 24 H 0.06 1.00 6.37 -2.39 -0.02 0.99 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 28 H 0.08 1.91 7.98 -2.39 -0.02 1.89 16 29 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.99 6.27 -2.39 -0.01 0.97 16 31 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.41 14.89 7.34 -92.71 -0.68 14.21 16 33 H 0.12 5.98 5.57 -2.91 -0.02 5.96 16 34 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 35 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 36 H 0.11 6.08 6.15 -2.91 -0.02 6.06 16 37 H 0.29 13.03 8.30 -92.71 -0.77 12.26 16 Total: -1.00 -66.13 307.11 4.42 -61.71 By element: Atomic # 1 Polarization: 38.34 SS G_CDS: 0.40 Total: 38.74 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.30 Total: -29.36 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -1.29 Total: -68.57 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.03 Total: -39.86 kcal Atomic # 14 Polarization: 35.31 SS G_CDS: 2.03 Total: 37.34 kcal Total: -66.13 4.42 -61.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339173261.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.523 kcal (2) G-P(sol) polarization free energy of solvation -66.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds