Wall clock time and date at job start Mon Mar 30 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47097 * 2 1 4 4 O 1.42896 * 109.47207 * 120.00041 * 2 1 3 5 5 C 1.42909 * 113.99966 * 89.99960 * 4 2 1 6 6 C 1.50696 * 109.46837 * 180.02562 * 5 4 2 7 7 O 1.21283 * 120.00344 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99857 * 180.02562 * 6 5 4 9 9 C 1.39134 * 119.99908 * 184.36383 * 8 6 5 10 10 C 1.38646 * 120.28763 * 325.34880 * 9 8 6 11 11 C 1.38221 * 120.03323 * 180.25555 * 10 9 8 12 12 C 1.38868 * 120.61475 * 359.74640 * 11 10 9 13 13 C 1.36460 * 120.57940 * 359.97438 * 12 11 10 14 14 C 1.40740 * 119.94210 * 0.02562 * 13 12 11 15 15 C 1.41069 * 120.30046 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00387 * 154.82994 * 15 14 13 17 17 C 1.39962 * 120.00202 * 334.82811 * 15 14 13 18 18 N 1.30857 * 119.99832 * 334.81928 * 17 15 14 19 19 Si 1.86799 * 120.00354 * 154.81581 * 17 15 14 20 20 H 1.48500 * 109.47472 * 180.02562 * 19 17 15 21 21 H 1.48504 * 109.47034 * 300.00246 * 19 17 15 22 22 H 1.48503 * 109.47086 * 59.99823 * 19 17 15 23 23 H 1.09007 * 109.47156 * 59.99915 * 1 2 3 24 24 H 1.08996 * 109.47218 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47284 * 299.99935 * 1 2 3 26 26 H 1.09004 * 109.46914 * 239.99718 * 2 1 3 27 27 H 1.09009 * 109.47464 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.47131 * 299.99532 * 3 2 1 29 29 H 1.08996 * 109.47502 * 60.00427 * 3 2 1 30 30 H 1.08997 * 109.46961 * 60.00011 * 5 4 2 31 31 H 1.08999 * 109.47016 * 299.99608 * 5 4 2 32 32 H 0.97002 * 120.00082 * 4.36702 * 8 6 5 33 33 H 1.07995 * 119.97820 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.69240 * 179.75844 * 11 10 9 35 35 H 1.07998 * 119.70997 * 180.02562 * 12 11 10 36 36 H 1.08001 * 120.03392 * 180.02562 * 13 12 11 37 37 H 0.97000 * 119.99823 * 354.63050 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.2001 -2.0783 0.9885 6 6 2.7002 -2.6834 2.2748 7 8 2.8742 -1.9811 3.2482 8 7 2.9553 -4.0051 2.3433 9 6 3.3297 -4.5795 3.5540 10 6 4.1098 -3.8691 4.4534 11 6 4.4831 -4.4468 5.6523 12 6 4.0796 -5.7366 5.9718 13 6 3.3067 -6.4563 5.1076 14 6 2.9128 -5.8914 3.8802 15 6 2.1143 -6.6288 2.9809 16 1 1.4863 -6.1138 2.2690 17 6 2.1360 -8.0279 3.0112 18 7 3.1867 -8.6562 3.4735 19 14 0.6651 -8.9985 2.3917 20 1 0.9366 -10.4518 2.5311 21 1 -0.5354 -8.6409 3.1894 22 1 0.4243 -8.6742 0.9626 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8901 29 1 1.6767 1.9563 0.8900 30 1 2.9319 -2.2467 0.1986 31 1 1.2538 -2.5434 0.7125 32 1 2.8779 -4.5558 1.5485 33 1 4.4297 -2.8655 4.2150 34 1 5.0942 -3.8899 6.3472 35 1 4.3794 -6.1736 6.9128 36 1 2.9976 -7.4585 5.3652 37 1 3.9799 -8.1565 3.7224 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361015863.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:44 Heat of formation + Delta-G solvation = -75.126074 kcal Electronic energy + Delta-G solvation = -19436.167428 eV Core-core repulsion = 16370.828994 eV Total energy + Delta-G solvation = -3065.338434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.70192 -38.26990 -37.13093 -33.97124 -33.77799 -32.81002 -29.43322 -29.19146 -27.46332 -26.89556 -25.00658 -21.77914 -21.38740 -20.94329 -19.51226 -18.05230 -17.05580 -16.81949 -15.96262 -15.69117 -14.87165 -14.61686 -14.34688 -14.13433 -13.84583 -13.16480 -12.93836 -12.80721 -12.55531 -12.34509 -12.22232 -12.03295 -11.90926 -11.58161 -11.41497 -11.04421 -10.83113 -10.69646 -10.46156 -10.29719 -9.70369 -9.67038 -9.32799 -9.04551 -8.83246 -7.62562 -7.40312 -6.97512 -4.49478 2.55378 2.79086 3.10069 3.15003 3.21940 3.31002 3.37175 3.94991 4.27142 4.53076 4.75671 4.88330 5.03249 5.12603 5.27916 5.30731 5.43784 5.47576 5.57141 5.66363 5.69618 6.03402 6.08246 6.20682 6.33220 6.48390 6.81383 6.94562 7.12014 7.13948 7.37516 7.52920 7.71376 7.76328 7.91669 8.01305 8.21292 8.34138 8.66215 8.76676 8.96027 9.98386 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.005303 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.864434 B = 5278.990349 C = 6520.351225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.148 4.148 4 O -0.356 6.356 5 C 0.047 3.953 6 C 0.497 3.503 7 O -0.520 6.520 8 N -0.636 5.636 9 C 0.007 3.993 10 C -0.073 4.073 11 C -0.240 4.240 12 C -0.092 4.092 13 C -0.208 4.208 14 C 0.092 3.908 15 C -0.526 4.526 16 H 0.074 0.926 17 C 0.041 3.959 18 N -0.794 5.794 19 Si 1.064 2.936 20 H -0.274 1.274 21 H -0.275 1.275 22 H -0.277 1.277 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.402 0.598 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 8.719 -9.313 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.020 3.980 3 C -0.206 4.206 4 O -0.275 6.275 5 C -0.033 4.033 6 C 0.283 3.717 7 O -0.396 6.396 8 N -0.280 5.280 9 C -0.087 4.087 10 C -0.093 4.093 11 C -0.260 4.260 12 C -0.110 4.110 13 C -0.228 4.228 14 C 0.087 3.913 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.181 4.181 18 N -0.418 5.418 19 Si 0.888 3.112 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.202 1.202 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.127 0.873 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.752 7.777 -8.631 12.209 hybrid contribution 0.437 1.120 -0.423 1.274 sum -3.315 8.897 -9.054 13.120 Atomic orbital electron populations 1.22315 0.95978 1.02524 1.02564 1.22147 0.93759 0.93983 0.88150 1.21843 1.01899 0.94404 1.02429 1.88074 1.86487 1.18045 1.34847 1.22228 1.01036 0.83703 0.96362 1.20188 0.79189 0.82795 0.89532 1.90669 1.51135 1.60430 1.37382 1.42701 1.66401 1.07410 1.11497 1.17580 1.06061 0.96593 0.88436 1.20721 0.95851 0.98539 0.94165 1.20269 1.10079 0.96650 0.98973 1.20404 0.98293 0.94465 0.97879 1.20751 1.06053 1.01089 0.94911 1.17482 0.90781 0.90835 0.92169 1.20320 1.23540 0.93635 1.17968 0.90802 1.26968 1.01524 0.96065 0.93588 1.70468 1.03093 1.41992 1.26210 0.83644 0.74326 0.76286 0.76969 1.19834 1.20036 1.20204 0.91718 0.92377 0.91599 0.92182 0.91933 0.91340 0.91633 0.90707 0.90530 0.76268 0.87104 0.88958 0.89145 0.87331 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.53 37.16 0.35 -1.39 16 2 C 0.08 0.86 3.34 -26.74 -0.09 0.77 16 3 C -0.15 -1.44 9.56 37.15 0.36 -1.08 16 4 O -0.36 -5.59 9.52 -55.14 -0.52 -6.11 16 5 C 0.05 0.69 6.23 36.00 0.22 0.91 16 6 C 0.50 9.90 7.75 -10.99 -0.09 9.81 16 7 O -0.52 -12.49 13.91 -14.35 -0.20 -12.69 16 8 N -0.64 -13.09 4.90 -9.47 -0.05 -13.14 16 9 C 0.01 0.16 6.34 -83.17 -0.53 -0.36 16 10 C -0.07 -1.78 8.69 -39.44 -0.34 -2.12 16 11 C -0.24 -5.64 10.04 -39.35 -0.39 -6.04 16 12 C -0.09 -2.16 9.97 -39.99 -0.40 -2.56 16 13 C -0.21 -5.28 7.88 -39.28 -0.31 -5.59 16 14 C 0.09 2.35 5.32 -106.65 -0.57 1.78 16 15 C -0.53 -13.08 8.35 -37.86 -0.32 -13.39 16 16 H 0.07 1.74 7.39 -52.48 -0.39 1.35 16 17 C 0.04 0.99 4.95 -17.32 -0.09 0.90 16 18 N -0.79 -20.21 12.32 55.55 0.68 -19.53 16 19 Si 1.06 20.55 30.00 -169.99 -5.10 15.45 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 22 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 23 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 24 H 0.06 0.58 7.87 -51.93 -0.41 0.17 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.56 7.79 -51.93 -0.40 0.16 16 27 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.08 0.96 7.87 -51.93 -0.41 0.55 16 32 H 0.40 7.24 7.96 -40.82 -0.32 6.92 16 33 H 0.11 2.72 6.20 -52.49 -0.33 2.39 16 34 H 0.09 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.11 2.81 6.45 -52.49 -0.34 2.47 16 37 H 0.30 7.87 6.62 -40.82 -0.27 7.60 16 LS Contribution 312.94 15.07 4.72 4.72 Total: -1.00 -30.34 312.94 -7.70 -38.04 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.04 Total: 11.63 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -2.18 Total: -18.37 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.64 Total: -32.66 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.72 Total: -18.80 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.10 Total: 15.45 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.34 -7.70 -38.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361015863.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.088 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds