Wall clock time and date at job start Mon Mar 30 2020 00:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.54837 * 2 1 4 4 C 1.54993 * 110.62229 * 122.87433 * 2 1 3 5 5 C 1.54804 * 102.09477 * 155.68435 * 4 2 1 6 6 H 1.08999 * 110.49229 * 97.80180 * 5 4 2 7 7 N 1.46498 * 110.48792 * 220.31370 * 5 4 2 8 8 C 1.39679 * 120.00066 * 204.99608 * 7 5 4 9 9 C 1.39000 * 120.03901 * 0.02562 * 8 7 5 10 10 C 1.38148 * 120.06441 * 179.97438 * 9 8 7 11 11 C 1.38169 * 120.14128 * 0.02562 * 10 9 8 12 12 C 1.38918 * 120.08081 * 359.97438 * 11 10 9 13 13 O 1.35750 * 120.03400 * 179.97438 * 12 11 10 14 14 C 1.34834 * 116.99985 * 174.49056 * 13 12 11 15 15 H 1.07993 * 120.00161 * 5.08212 * 14 13 12 16 16 C 1.38647 * 119.99886 * 185.08367 * 14 13 12 17 17 N 1.31560 * 120.00237 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 120.00078 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47401 * 60.00119 * 18 16 14 20 20 H 1.48500 * 109.47368 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47169 * 299.99891 * 18 16 14 22 22 C 1.38753 * 120.03832 * 179.72442 * 8 7 5 23 23 C 1.54100 * 104.18841 * 339.12201 * 5 4 2 24 24 O 1.43742 * 107.29172 * 357.96800 * 23 5 4 25 25 H 1.08999 * 109.47271 * 299.29559 * 1 2 3 26 26 H 1.08994 * 109.47448 * 59.30179 * 1 2 3 27 27 H 1.09001 * 109.46902 * 179.30211 * 1 2 3 28 28 H 1.09001 * 110.91430 * 273.88659 * 4 2 1 29 29 H 1.09005 * 110.90322 * 37.48746 * 4 2 1 30 30 H 0.97000 * 120.00564 * 25.00190 * 7 5 4 31 31 H 1.08007 * 119.96922 * 359.97128 * 9 8 7 32 32 H 1.08003 * 119.93027 * 179.97438 * 10 9 8 33 33 H 1.08007 * 119.96204 * 179.97438 * 11 10 9 34 34 H 0.96998 * 120.00209 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.07565 * 359.97438 * 22 8 7 36 36 H 1.08996 * 109.87908 * 117.39555 * 23 5 4 37 37 H 1.08997 * 109.88121 * 238.54950 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0758 -0.7874 1.2183 5 6 3.4811 -1.2119 0.7269 6 1 4.2403 -0.5266 1.1038 7 7 3.7778 -2.5841 1.1455 8 6 5.1037 -2.9990 1.2902 9 6 6.1423 -2.1103 1.0377 10 6 7.4538 -2.5199 1.1811 11 6 7.7375 -3.8135 1.5752 12 6 6.7042 -4.7065 1.8291 13 8 6.9840 -5.9773 2.2157 14 6 5.9386 -6.7579 2.5561 15 1 4.9297 -6.3919 2.4358 16 6 6.1589 -8.0305 3.0604 17 7 7.3879 -8.4766 3.2065 18 14 4.7106 -9.1121 3.5313 19 1 3.8561 -9.3419 2.3387 20 1 5.2103 -10.4143 4.0410 21 1 3.9140 -8.4399 4.5890 22 6 5.3855 -4.2968 1.6921 23 6 3.3875 -1.1217 -0.8086 24 8 2.0416 -0.7348 -1.1326 25 1 -0.3634 0.5028 0.8962 26 1 -0.3634 0.5246 -0.8836 27 1 -0.3633 -1.0276 -0.0125 28 1 2.1483 -0.1451 2.0960 29 1 1.4566 -1.6599 1.4267 30 1 3.0535 -3.2047 1.3222 31 1 5.9237 -1.0987 0.7290 32 1 8.2591 -1.8278 0.9840 33 1 8.7640 -4.1307 1.6860 34 1 7.5420 -9.3667 3.5598 35 1 4.5804 -4.9877 1.8940 36 1 4.0878 -0.3733 -1.1792 37 1 3.6107 -2.0924 -1.2512 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401957713.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:34 Heat of formation + Delta-G solvation = -66.527091 kcal Electronic energy + Delta-G solvation = -19308.001181 eV Core-core repulsion = 16243.035627 eV Total energy + Delta-G solvation = -3064.965554 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05862 -40.38287 -38.49319 -35.92480 -34.21527 -33.09791 -31.94061 -30.38493 -28.88346 -27.26351 -26.94605 -23.57485 -23.23836 -22.12421 -21.54749 -19.69689 -19.10706 -17.73927 -17.33765 -16.80368 -16.64243 -16.33644 -15.97127 -15.70690 -15.49762 -14.90659 -14.54154 -14.39951 -14.04975 -13.87006 -13.51165 -13.33940 -13.15539 -12.77067 -12.68601 -12.51457 -12.35909 -12.33955 -12.14951 -11.96519 -11.70436 -11.29804 -11.03386 -10.72805 -10.50227 -9.12003 -8.45649 -8.27386 -6.14255 0.75511 0.89914 1.33841 1.45395 1.50320 2.18317 2.41755 2.87849 2.92599 3.24450 3.53532 3.59140 3.82315 3.98550 4.05025 4.19773 4.27367 4.43341 4.44877 4.55661 4.61903 4.70092 4.74194 4.84712 4.87361 4.98806 5.05796 5.11135 5.15432 5.16304 5.28628 5.44745 5.74679 5.79818 5.93484 6.03365 6.10854 6.56964 6.79347 6.99470 7.82627 8.77797 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.022503 B = 0.004529 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.975550 B = 6181.074351 C = 7200.699395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.067 3.933 3 H 0.088 0.912 4 C -0.152 4.152 5 C 0.121 3.879 6 H 0.108 0.892 7 N -0.735 5.735 8 C 0.255 3.745 9 C -0.263 4.263 10 C -0.025 4.025 11 C -0.261 4.261 12 C 0.152 3.848 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.099 0.901 16 C -0.023 4.023 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.258 1.258 22 C -0.316 4.316 23 C 0.032 3.968 24 O -0.398 6.398 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.399 0.601 31 H 0.144 0.856 32 H 0.154 0.846 33 H 0.106 0.894 34 H 0.272 0.728 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.562 18.274 -4.204 22.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 H 0.106 0.894 4 C -0.190 4.190 5 C 0.015 3.985 6 H 0.125 0.875 7 N -0.365 5.365 8 C 0.151 3.849 9 C -0.286 4.286 10 C -0.044 4.044 11 C -0.282 4.282 12 C 0.101 3.899 13 O -0.138 6.138 14 C -0.489 4.489 15 H 0.116 0.884 16 C -0.220 4.220 17 N -0.560 5.560 18 Si 0.837 3.163 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.340 4.340 23 C -0.047 4.047 24 O -0.318 6.318 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.234 0.766 31 H 0.162 0.838 32 H 0.171 0.829 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.096 0.904 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.369 18.126 -4.366 22.374 hybrid contribution -0.296 -1.313 0.420 1.410 sum -12.665 16.813 -3.946 21.416 Atomic orbital electron populations 1.21794 0.92095 1.02773 1.03552 1.23315 0.96165 0.95700 0.83793 0.89384 1.23466 0.94211 1.01637 0.99646 1.22385 0.98733 0.83885 0.93453 0.87456 1.44721 1.03340 1.12638 1.75795 1.17552 0.85641 0.91083 0.90591 1.20583 0.91310 1.00325 1.16366 1.20842 0.97062 0.93272 0.93196 1.20289 0.97012 0.94962 1.15889 1.19651 0.94029 0.84799 0.91422 1.83949 1.35988 1.18986 1.74924 1.21751 0.86835 0.96476 1.43819 0.88385 1.26574 1.01362 0.97922 0.96157 1.70182 1.22177 1.19093 1.44581 0.84667 0.75769 0.76613 0.79265 1.18298 1.19505 1.18194 1.20520 0.95963 0.97567 1.19923 1.23774 0.84344 1.00732 0.95822 1.88885 1.28237 1.74294 1.40381 0.88960 0.91715 0.92718 0.87484 0.90195 0.76573 0.83798 0.82877 0.87553 0.91860 0.86953 0.90417 0.91169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.66 71.98 0.70 -1.15 16 2 C 0.07 1.04 3.97 31.27 0.12 1.17 16 3 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.15 -2.34 6.30 31.89 0.20 -2.14 16 5 C 0.12 2.42 3.11 45.98 0.14 2.57 16 6 H 0.11 1.91 6.40 -2.39 -0.02 1.90 16 7 N -0.73 -19.85 5.21 -314.36 -1.64 -21.49 16 8 C 0.25 8.94 6.65 38.20 0.25 9.20 16 9 C -0.26 -8.24 9.22 22.43 0.21 -8.03 16 10 C -0.03 -0.85 10.03 22.23 0.22 -0.63 16 11 C -0.26 -11.51 9.99 22.42 0.22 -11.28 16 12 C 0.15 7.86 6.65 22.56 0.15 8.01 16 13 O -0.23 -14.42 9.76 -22.79 -0.22 -14.64 16 14 C -0.41 -24.67 9.49 67.92 0.64 -24.03 16 15 H 0.10 5.41 5.20 -2.91 -0.02 5.39 16 16 C -0.02 -1.33 5.49 84.83 0.47 -0.86 16 17 N -0.92 -57.68 13.67 21.61 0.30 -57.38 16 18 Si 1.02 43.63 29.55 68.60 2.03 45.66 16 19 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 20 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.32 -14.20 9.01 22.52 0.20 -13.99 16 23 C 0.03 0.68 7.51 72.35 0.54 1.22 16 24 O -0.40 -9.02 11.23 -148.98 -1.67 -10.69 16 25 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.32 7.69 -2.38 -0.02 1.30 16 30 H 0.40 10.49 8.41 -92.71 -0.78 9.71 16 31 H 0.14 3.39 6.20 -2.91 -0.02 3.37 16 32 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.11 5.19 5.63 -2.91 -0.02 5.18 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.07 1.81 7.94 -2.39 -0.02 1.79 16 Total: -1.00 -73.45 308.54 3.17 -70.27 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.31 Total: 28.23 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.08 Total: -39.95 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -1.34 Total: -78.87 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -1.90 Total: -25.34 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.45 3.17 -70.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401957713.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.747 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds