Wall clock time and date at job start Mon Mar 30 2020 00:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.33179 * 2 1 4 4 C 1.54483 * 110.37154 * 122.24725 * 2 1 3 5 5 C 1.54504 * 104.05981 * 142.81299 * 4 2 1 6 6 H 1.09007 * 110.51015 * 241.21742 * 5 4 2 7 7 N 1.46499 * 110.51429 * 118.64806 * 5 4 2 8 8 C 1.39667 * 120.00540 * 154.99526 * 7 5 4 9 9 C 1.39002 * 120.03720 * 0.02562 * 8 7 5 10 10 C 1.38150 * 120.06285 * 179.97438 * 9 8 7 11 11 C 1.38176 * 120.14141 * 0.02562 * 10 9 8 12 12 C 1.38918 * 120.07815 * 359.97383 * 11 10 9 13 13 O 1.35747 * 120.02811 * 180.02562 * 12 11 10 14 14 C 1.34831 * 117.00025 * 185.51542 * 13 12 11 15 15 H 1.08004 * 119.99754 * 354.92850 * 14 13 12 16 16 C 1.38651 * 120.00153 * 174.92082 * 14 13 12 17 17 N 1.31554 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99800 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47295 * 90.00317 * 18 16 14 20 20 H 1.48503 * 109.46970 * 210.00349 * 18 16 14 21 21 H 1.48497 * 109.47566 * 330.00139 * 18 16 14 22 22 C 1.38753 * 120.04089 * 180.29807 * 8 7 5 23 23 C 1.54475 * 104.06455 * 359.97438 * 5 4 2 24 24 O 1.44417 * 104.80540 * 336.02232 * 23 5 4 25 25 H 1.09003 * 109.47736 * 297.75090 * 1 2 3 26 26 H 1.08997 * 109.47398 * 57.75238 * 1 2 3 27 27 H 1.09007 * 109.47291 * 177.74939 * 1 2 3 28 28 H 1.09002 * 110.50666 * 24.16759 * 4 2 1 29 29 H 1.08996 * 110.50990 * 261.45763 * 4 2 1 30 30 H 0.97002 * 119.99601 * 334.99484 * 7 5 4 31 31 H 1.07999 * 119.97312 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.93055 * 180.02562 * 10 9 8 33 33 H 1.08006 * 119.95840 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.07465 * 0.02562 * 22 8 7 36 36 H 1.09004 * 110.37119 * 94.85517 * 23 5 4 37 37 H 1.09008 * 110.37412 * 217.18837 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 1.2248 5 6 3.3177 -1.5048 0.6875 6 1 3.1965 -2.5844 0.7782 7 7 4.5181 -1.0628 1.4015 8 6 5.6324 -1.9011 1.4803 9 6 5.6035 -3.1549 0.8810 10 6 6.7056 -3.9844 0.9581 11 6 7.8394 -3.5710 1.6311 12 6 7.8746 -2.3191 2.2322 13 8 8.9892 -1.9138 2.8927 14 6 8.9181 -0.7385 3.5495 15 1 8.0319 -0.1266 3.4671 16 6 9.9825 -0.3154 4.3307 17 7 11.0621 -1.0605 4.4308 18 14 9.8836 1.3127 5.2412 19 1 9.3040 1.0910 6.5903 20 1 11.2461 1.8879 5.3762 21 1 9.0223 2.2536 4.4810 22 6 6.7675 -1.4856 2.1616 23 6 3.3869 -1.0884 -0.7984 24 8 2.0323 -0.7257 -1.1435 25 1 -0.3635 0.4785 0.9095 26 1 -0.3634 0.5483 -0.8691 27 1 -0.3634 -1.0269 -0.0404 28 1 1.3274 -1.4902 1.5788 29 1 2.3428 -0.0818 2.0216 30 1 4.5390 -0.1877 1.8196 31 1 4.7190 -3.4808 0.3538 32 1 6.6810 -4.9580 0.4913 33 1 8.6995 -4.2217 1.6892 34 1 11.8069 -0.7643 4.9771 35 1 6.7909 -0.5139 2.6322 36 1 4.0519 -0.2337 -0.9223 37 1 3.7238 -1.9244 -1.4115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401957714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:36 Heat of formation + Delta-G solvation = -45.448268 kcal Electronic energy + Delta-G solvation = -19299.036353 eV Core-core repulsion = 16234.984845 eV Total energy + Delta-G solvation = -3064.051507 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.94193 -38.86205 -36.86693 -34.58318 -32.34880 -32.17629 -30.70890 -28.76608 -27.44136 -26.12056 -25.24128 -22.34825 -21.76229 -21.28717 -20.22368 -17.93291 -17.54427 -16.46773 -15.89335 -15.60069 -15.46941 -14.85649 -14.57036 -14.22068 -13.75656 -13.62599 -13.43436 -12.92010 -12.87762 -12.50069 -12.40908 -12.10174 -11.90728 -11.64156 -11.49527 -11.21689 -10.97325 -10.92052 -10.76335 -10.52958 -10.38098 -9.97061 -9.41951 -9.38927 -8.76760 -7.38137 -6.81850 -6.41807 -4.01199 2.36243 2.53608 3.13334 3.14283 3.18497 3.50268 3.93970 3.98931 4.38427 4.49507 4.68715 4.81156 4.99961 5.02223 5.14683 5.18534 5.35986 5.39183 5.41499 5.58611 5.69371 5.75304 5.77792 5.79833 5.88636 5.99135 6.26274 6.33578 6.55439 6.62843 6.72136 7.01420 7.14266 7.37543 7.47126 7.64059 7.97432 8.04014 8.15170 9.04232 9.76621 10.76551 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.004444 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.773558 B = 6299.401383 C = 7275.325706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.068 0.932 4 C -0.159 4.159 5 C 0.127 3.873 6 H 0.094 0.906 7 N -0.744 5.744 8 C 0.246 3.754 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.235 4.235 12 C 0.189 3.811 13 O -0.178 6.178 14 C -0.390 4.390 15 H 0.091 0.909 16 C 0.039 3.961 17 N -0.864 5.864 18 Si 0.940 3.060 19 H -0.274 1.274 20 H -0.278 1.278 21 H -0.269 1.269 22 C -0.300 4.300 23 C 0.029 3.971 24 O -0.374 6.374 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.395 0.605 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.269 0.731 35 H 0.124 0.876 36 H 0.065 0.935 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.159 1.606 -6.250 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.198 4.198 5 C 0.019 3.981 6 H 0.112 0.888 7 N -0.377 5.377 8 C 0.146 3.854 9 C -0.303 4.303 10 C -0.058 4.058 11 C -0.256 4.256 12 C 0.135 3.865 13 O -0.081 6.081 14 C -0.466 4.466 15 H 0.108 0.892 16 C -0.165 4.165 17 N -0.499 5.499 18 Si 0.765 3.235 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.324 4.324 23 C -0.049 4.049 24 O -0.292 6.292 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.230 0.770 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.083 0.917 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.942 1.370 -6.399 18.161 hybrid contribution 0.098 1.264 0.819 1.509 sum -16.844 2.634 -5.580 17.938 Atomic orbital electron populations 1.21805 0.93231 1.02966 1.02346 1.22962 0.95260 0.95497 0.85151 0.91401 1.23280 0.97570 1.00317 0.98590 1.22107 0.84784 1.00126 0.91041 0.88759 1.44577 1.12429 1.19116 1.61581 1.17472 0.85892 0.89553 0.92502 1.20100 1.00450 0.95795 1.13965 1.20384 0.92082 0.97600 0.95780 1.20060 1.00169 0.96259 1.09064 1.19069 0.85943 0.91730 0.89773 1.83989 1.29574 1.37621 1.56894 1.21296 1.03839 0.94952 1.26532 0.89205 1.25269 0.94742 0.99563 0.96962 1.70038 1.05001 1.37189 1.37687 0.85733 0.78039 0.80232 0.79518 1.19947 1.20280 1.19334 1.20502 0.94630 1.03541 1.13743 1.24040 0.84002 1.00733 0.96136 1.89139 1.27404 1.74443 1.38254 0.91179 0.91929 0.91699 0.89730 0.89867 0.77003 0.87801 0.87139 0.86866 0.92088 0.85790 0.91677 0.88693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.52 37.15 0.35 -0.78 16 2 C 0.07 0.67 3.92 -25.96 -0.10 0.57 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.16 -1.54 6.39 -25.16 -0.16 -1.70 16 5 C 0.13 1.51 3.19 -66.37 -0.21 1.30 16 6 H 0.09 1.16 6.40 -51.92 -0.33 0.83 16 7 N -0.74 -10.71 5.26 -50.67 -0.27 -10.98 16 8 C 0.25 4.52 6.65 -83.82 -0.56 3.96 16 9 C -0.28 -4.91 9.22 -39.33 -0.36 -5.28 16 10 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 11 C -0.23 -5.10 9.99 -39.35 -0.39 -5.49 16 12 C 0.19 4.66 6.65 -39.14 -0.26 4.40 16 13 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 14 C -0.39 -10.98 9.49 30.88 0.29 -10.69 16 15 H 0.09 2.34 5.20 -52.48 -0.27 2.07 16 16 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 17 N -0.86 -25.54 13.67 55.48 0.76 -24.78 16 18 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 19 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 C -0.30 -6.57 9.01 -39.20 -0.35 -6.92 16 23 C 0.03 0.36 7.35 37.93 0.28 0.63 16 24 O -0.37 -4.61 11.34 -35.23 -0.40 -5.01 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 28 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 29 H 0.08 0.75 7.70 -51.93 -0.40 0.35 16 30 H 0.40 5.26 8.39 -40.82 -0.34 4.92 16 31 H 0.10 1.56 6.20 -52.49 -0.33 1.24 16 32 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 33 H 0.11 2.39 8.06 -52.48 -0.42 1.97 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 2.72 5.63 -52.49 -0.30 2.43 16 36 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 37 H 0.09 1.12 8.14 -51.92 -0.42 0.69 16 LS Contribution 308.38 15.07 4.65 4.65 Total: -1.00 -31.16 308.38 -7.14 -38.30 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -4.89 Total: 7.53 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -1.97 Total: -20.14 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.49 Total: -35.76 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -0.40 Total: -10.16 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.16 -7.14 -38.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401957714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.148 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds