Wall clock time and date at job start Mon Mar 30 2020 00:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 110.33179 * 2 1 4 4 C 1.54483 * 110.37154 * 122.24725 * 2 1 3 5 5 C 1.54504 * 104.05981 * 142.81299 * 4 2 1 6 6 H 1.09007 * 110.51015 * 241.21742 * 5 4 2 7 7 N 1.46499 * 110.51429 * 118.64806 * 5 4 2 8 8 C 1.39667 * 120.00540 * 154.99526 * 7 5 4 9 9 C 1.39002 * 120.03720 * 0.02562 * 8 7 5 10 10 C 1.38150 * 120.06285 * 179.97438 * 9 8 7 11 11 C 1.38176 * 120.14141 * 0.02562 * 10 9 8 12 12 C 1.38918 * 120.07815 * 359.97383 * 11 10 9 13 13 O 1.35747 * 120.02811 * 180.02562 * 12 11 10 14 14 C 1.34831 * 117.00025 * 185.51542 * 13 12 11 15 15 H 1.08004 * 119.99754 * 354.92850 * 14 13 12 16 16 C 1.38651 * 120.00153 * 174.92082 * 14 13 12 17 17 N 1.31554 * 120.00132 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99800 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47295 * 90.00317 * 18 16 14 20 20 H 1.48503 * 109.46970 * 210.00349 * 18 16 14 21 21 H 1.48497 * 109.47566 * 330.00139 * 18 16 14 22 22 C 1.38753 * 120.04089 * 180.29807 * 8 7 5 23 23 C 1.54475 * 104.06455 * 359.97438 * 5 4 2 24 24 O 1.44417 * 104.80540 * 336.02232 * 23 5 4 25 25 H 1.09003 * 109.47736 * 297.75090 * 1 2 3 26 26 H 1.08997 * 109.47398 * 57.75238 * 1 2 3 27 27 H 1.09007 * 109.47291 * 177.74939 * 1 2 3 28 28 H 1.09002 * 110.50666 * 24.16759 * 4 2 1 29 29 H 1.08996 * 110.50990 * 261.45763 * 4 2 1 30 30 H 0.97002 * 119.99601 * 334.99484 * 7 5 4 31 31 H 1.07999 * 119.97312 * 0.02562 * 9 8 7 32 32 H 1.07997 * 119.93055 * 180.02562 * 10 9 8 33 33 H 1.08006 * 119.95840 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00095 * 179.97438 * 17 16 14 35 35 H 1.07997 * 120.07465 * 0.02562 * 22 8 7 36 36 H 1.09004 * 110.37119 * 94.85517 * 23 5 4 37 37 H 1.09008 * 110.37412 * 217.18837 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 1.2248 5 6 3.3177 -1.5048 0.6875 6 1 3.1965 -2.5844 0.7782 7 7 4.5181 -1.0628 1.4015 8 6 5.6324 -1.9011 1.4803 9 6 5.6035 -3.1549 0.8810 10 6 6.7056 -3.9844 0.9581 11 6 7.8394 -3.5710 1.6311 12 6 7.8746 -2.3191 2.2322 13 8 8.9892 -1.9138 2.8927 14 6 8.9181 -0.7385 3.5495 15 1 8.0319 -0.1266 3.4671 16 6 9.9825 -0.3154 4.3307 17 7 11.0621 -1.0605 4.4308 18 14 9.8836 1.3127 5.2412 19 1 9.3040 1.0910 6.5903 20 1 11.2461 1.8879 5.3762 21 1 9.0223 2.2536 4.4810 22 6 6.7675 -1.4856 2.1616 23 6 3.3869 -1.0884 -0.7984 24 8 2.0323 -0.7257 -1.1435 25 1 -0.3635 0.4785 0.9095 26 1 -0.3634 0.5483 -0.8691 27 1 -0.3634 -1.0269 -0.0404 28 1 1.3274 -1.4902 1.5788 29 1 2.3428 -0.0818 2.0216 30 1 4.5390 -0.1877 1.8196 31 1 4.7190 -3.4808 0.3538 32 1 6.6810 -4.9580 0.4913 33 1 8.6995 -4.2217 1.6892 34 1 11.8069 -0.7643 4.9771 35 1 6.7909 -0.5139 2.6322 36 1 4.0519 -0.2337 -0.9223 37 1 3.7238 -1.9244 -1.4115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401957714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:36 Heat of formation + Delta-G solvation = -66.342542 kcal Electronic energy + Delta-G solvation = -19299.942396 eV Core-core repulsion = 16234.984845 eV Total energy + Delta-G solvation = -3064.957551 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.06537 -40.39136 -38.49490 -35.94066 -34.21281 -33.10141 -31.92982 -30.38180 -28.83262 -27.25684 -26.88565 -23.63208 -23.22318 -22.28096 -21.53756 -19.71874 -19.17131 -17.50200 -17.27025 -16.86323 -16.52639 -16.29585 -16.01738 -15.64780 -15.48440 -15.27417 -14.55682 -14.39097 -14.05878 -13.78045 -13.50997 -13.32936 -13.05055 -12.86990 -12.76080 -12.49668 -12.45232 -12.21619 -12.11481 -11.96329 -11.63563 -11.28934 -11.01089 -10.79019 -10.58511 -9.11828 -8.45265 -8.27781 -6.13752 0.75590 0.89882 1.34508 1.44924 1.52077 2.18523 2.37715 2.88824 3.03187 3.24931 3.53531 3.59658 3.73893 3.95587 4.11360 4.18943 4.24598 4.40872 4.44535 4.60043 4.64724 4.67647 4.74425 4.83533 4.84587 4.98537 5.09237 5.10447 5.13315 5.16200 5.28460 5.43640 5.74626 5.80203 5.82225 6.03248 6.10982 6.56450 6.81357 7.00002 7.83305 8.78444 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023608 B = 0.004444 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.773558 B = 6299.401383 C = 7275.325706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.063 3.937 3 H 0.070 0.930 4 C -0.152 4.152 5 C 0.123 3.877 6 H 0.100 0.900 7 N -0.733 5.733 8 C 0.255 3.745 9 C -0.264 4.264 10 C -0.026 4.026 11 C -0.260 4.260 12 C 0.153 3.847 13 O -0.232 6.232 14 C -0.411 4.411 15 H 0.100 0.900 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.019 2.981 19 H -0.263 1.263 20 H -0.271 1.271 21 H -0.253 1.253 22 C -0.314 4.314 23 C 0.031 3.969 24 O -0.388 6.388 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.401 0.599 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.106 0.894 34 H 0.272 0.728 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.528 2.066 -6.908 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.006 3.994 3 H 0.088 0.912 4 C -0.190 4.190 5 C 0.017 3.983 6 H 0.118 0.882 7 N -0.364 5.364 8 C 0.152 3.848 9 C -0.287 4.287 10 C -0.044 4.044 11 C -0.281 4.281 12 C 0.101 3.899 13 O -0.139 6.139 14 C -0.487 4.487 15 H 0.117 0.883 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.838 3.162 19 H -0.188 1.188 20 H -0.196 1.196 21 H -0.177 1.177 22 C -0.338 4.338 23 C -0.047 4.047 24 O -0.307 6.307 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.237 0.763 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.398 1.833 -7.097 21.675 hybrid contribution 0.849 0.995 0.810 1.539 sum -19.548 2.828 -6.286 20.728 Atomic orbital electron populations 1.21818 0.91660 1.03258 1.03338 1.23160 0.96550 0.95356 0.84337 0.91187 1.23270 0.96538 1.00552 0.98656 1.22303 0.84403 1.00708 0.90916 0.88230 1.44679 1.12024 1.18796 1.60921 1.17529 0.85834 0.90372 0.91060 1.20581 1.01229 0.94743 1.12123 1.20832 0.90538 0.99187 0.93875 1.20285 1.01712 0.95607 1.10522 1.19640 0.86179 0.93454 0.90602 1.83951 1.32149 1.38539 1.59236 1.21800 1.04594 0.95378 1.26976 0.88254 1.26586 0.93988 1.03866 0.97671 1.70190 1.06244 1.39930 1.39716 0.84590 0.78496 0.74961 0.78162 1.18821 1.19619 1.17679 1.20513 0.95386 1.03031 1.14860 1.23967 0.84100 1.00559 0.96098 1.89139 1.27267 1.74816 1.39527 0.89342 0.91946 0.91655 0.88265 0.89065 0.76330 0.84044 0.83020 0.87582 0.91894 0.86747 0.92626 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.52 71.98 0.68 -1.09 16 2 C 0.06 1.04 3.92 31.10 0.12 1.16 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.15 -2.37 6.39 31.61 0.20 -2.17 16 5 C 0.12 2.50 3.19 46.00 0.15 2.64 16 6 H 0.10 1.98 6.40 -2.38 -0.02 1.97 16 7 N -0.73 -19.12 5.26 -314.24 -1.65 -20.77 16 8 C 0.26 8.86 6.65 38.20 0.25 9.11 16 9 C -0.26 -8.33 9.22 22.43 0.21 -8.12 16 10 C -0.03 -0.88 10.03 22.23 0.22 -0.65 16 11 C -0.26 -11.47 9.99 22.42 0.22 -11.25 16 12 C 0.15 7.81 6.65 22.56 0.15 7.96 16 13 O -0.23 -14.33 9.76 -22.72 -0.22 -14.55 16 14 C -0.41 -24.34 9.49 67.92 0.64 -23.69 16 15 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 16 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16 17 N -0.92 -57.41 13.67 21.61 0.30 -57.11 16 18 Si 1.02 43.18 29.55 68.60 2.03 45.21 16 19 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 20 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 21 H -0.25 -9.92 7.11 99.48 0.71 -9.21 16 22 C -0.31 -13.89 9.01 22.52 0.20 -13.69 16 23 C 0.03 0.66 7.35 72.48 0.53 1.20 16 24 O -0.39 -8.52 11.34 -148.98 -1.69 -10.21 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.10 1.31 7.87 -2.39 -0.02 1.29 16 29 H 0.09 1.31 7.70 -2.39 -0.02 1.30 16 30 H 0.40 9.77 8.39 -92.71 -0.78 8.99 16 31 H 0.14 3.47 6.20 -2.91 -0.02 3.45 16 32 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 33 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.11 5.17 5.63 -2.91 -0.02 5.15 16 36 H 0.06 1.29 8.06 -2.38 -0.02 1.27 16 37 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 Total: -1.00 -72.09 308.38 3.12 -68.97 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.31 Total: 27.98 kcal Atomic # 6 Polarization: -43.58 SS G_CDS: 4.06 Total: -39.52 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.36 Total: -77.88 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -1.91 Total: -24.76 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -72.09 3.12 -68.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401957714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.626 kcal (2) G-P(sol) polarization free energy of solvation -72.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds