Wall clock time and date at job start Mon Mar 30 2020 00:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.33271 * 2 1 4 4 C 1.54480 * 110.37133 * 122.24753 * 2 1 3 5 5 C 1.54510 * 104.06221 * 142.80865 * 4 2 1 6 6 H 1.09003 * 110.51210 * 241.21292 * 5 4 2 7 7 N 1.46503 * 110.50982 * 118.64644 * 5 4 2 8 8 C 1.39777 * 120.00099 * 155.00052 * 7 5 4 9 9 C 1.38954 * 120.00681 * 180.02562 * 8 7 5 10 10 C 1.38006 * 119.99361 * 180.02562 * 9 8 7 11 11 C 1.38904 * 120.00930 * 0.02562 * 10 9 8 12 12 O 1.35794 * 119.99529 * 179.97438 * 11 10 9 13 13 C 1.34815 * 117.00012 * 5.54425 * 12 11 10 14 14 H 1.07997 * 119.99944 * 354.94407 * 13 12 11 15 15 C 1.38618 * 119.99744 * 174.94303 * 13 12 11 16 16 N 1.31582 * 120.00247 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99778 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46954 * 90.00364 * 17 15 13 19 19 H 1.48503 * 109.47365 * 209.99965 * 17 15 13 20 20 H 1.48499 * 109.47270 * 330.00143 * 17 15 13 21 21 C 1.38902 * 120.00537 * 0.25665 * 11 10 9 22 22 C 1.38010 * 120.00833 * 359.45147 * 21 11 10 23 23 C 1.54479 * 104.06325 * 0.02562 * 5 4 2 24 24 O 1.44420 * 110.37407 * 237.62563 * 2 1 3 25 25 H 1.09002 * 109.47447 * 297.74939 * 1 2 3 26 26 H 1.09000 * 109.47061 * 57.75652 * 1 2 3 27 27 H 1.09004 * 109.47524 * 177.75188 * 1 2 3 28 28 H 1.09008 * 110.51234 * 24.16518 * 4 2 1 29 29 H 1.09000 * 110.51362 * 261.45571 * 4 2 1 30 30 H 0.97007 * 119.99697 * 334.99511 * 7 5 4 31 31 H 1.08001 * 120.00106 * 0.03593 * 9 8 7 32 32 H 1.08007 * 119.99548 * 179.97438 * 10 9 8 33 33 H 0.97005 * 119.99886 * 359.97438 * 16 15 13 34 34 H 1.08004 * 119.99040 * 179.72174 * 21 11 10 35 35 H 1.07997 * 119.99802 * 180.26784 * 22 21 11 36 36 H 1.09002 * 110.36915 * 94.85309 * 23 5 4 37 37 H 1.09001 * 110.36817 * 217.18715 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0677 -0.7727 1.2248 5 6 3.3177 -1.5050 0.6875 6 1 3.1964 -2.5844 0.7783 7 7 4.5181 -1.0628 1.4016 8 6 5.6333 -1.9019 1.4803 9 6 6.7717 -1.4829 2.1580 10 6 7.8727 -2.3113 2.2351 11 6 7.8433 -3.5636 1.6350 12 8 8.9271 -4.3783 1.7106 13 6 9.9542 -3.9610 2.4777 14 1 9.9259 -2.9814 2.9317 15 6 11.0465 -4.7891 2.6837 16 7 11.0812 -5.9824 2.1302 17 14 12.4699 -4.2106 3.7460 18 1 12.2235 -4.5987 5.1580 19 1 13.7289 -4.8398 3.2723 20 1 12.5891 -2.7333 3.6523 21 6 6.7075 -3.9803 0.9525 22 6 5.6040 -3.1547 0.8802 23 6 3.3876 -1.0875 -0.7981 24 8 2.0327 -0.7249 -1.1434 25 1 -0.3634 0.4785 0.9095 26 1 -0.3633 0.5483 -0.8692 27 1 -0.3634 -1.0269 -0.0403 28 1 1.3274 -1.4903 1.5789 29 1 2.3429 -0.0818 2.0217 30 1 4.5390 -0.1877 1.8196 31 1 6.7947 -0.5090 2.6244 32 1 8.7578 -1.9854 2.7615 33 1 10.3421 -6.2827 1.5783 34 1 6.6865 -4.9523 0.4822 35 1 4.7194 -3.4806 0.3532 36 1 4.0530 -0.2330 -0.9212 37 1 3.7245 -1.9232 -1.4116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401959961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:44 Heat of formation + Delta-G solvation = -48.740172 kcal Electronic energy + Delta-G solvation = -19112.778735 eV Core-core repulsion = 16048.584480 eV Total energy + Delta-G solvation = -3064.194255 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.98134 -38.94631 -37.03965 -34.45727 -32.37783 -32.06358 -30.52201 -29.87383 -26.79721 -26.18219 -24.72341 -22.57513 -21.81725 -21.19503 -20.48806 -18.23928 -17.41556 -16.60682 -16.33632 -15.69723 -15.46642 -15.01379 -14.38503 -14.01931 -13.75689 -13.64773 -13.45891 -13.06544 -12.85855 -12.58857 -12.48478 -12.23997 -12.13640 -11.61371 -11.47032 -11.16839 -11.03092 -10.84518 -10.74176 -10.28503 -10.23195 -10.00326 -9.32337 -9.24544 -8.45206 -8.27717 -6.67039 -6.52031 -3.94038 2.09859 2.45674 3.27562 3.33783 3.47159 3.48032 3.91359 4.19119 4.34025 4.44574 4.61141 4.75747 4.94296 4.98769 5.12083 5.19317 5.29293 5.35117 5.36210 5.52633 5.56657 5.63106 5.71566 5.74463 5.78713 5.84350 6.10925 6.14776 6.41284 6.60596 6.76277 6.83706 7.01395 7.31970 7.42549 7.64112 7.84593 8.10081 8.51455 9.04085 9.75674 10.78154 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.060297 B = 0.003372 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.254282 B = 8301.682971 C = 8567.821380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.067 0.933 4 C -0.158 4.158 5 C 0.129 3.871 6 H 0.091 0.909 7 N -0.749 5.749 8 C 0.121 3.879 9 C -0.139 4.139 10 C -0.186 4.186 11 C 0.118 3.882 12 O -0.212 6.212 13 C -0.469 4.469 14 H 0.080 0.920 15 C 0.007 3.993 16 N -0.889 5.889 17 Si 1.098 2.902 18 H -0.282 1.282 19 H -0.277 1.277 20 H -0.284 1.284 21 C -0.153 4.153 22 C -0.145 4.145 23 C 0.028 3.972 24 O -0.374 6.374 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.392 0.608 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.281 0.719 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.030 11.791 -1.494 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.085 0.915 4 C -0.197 4.197 5 C 0.022 3.978 6 H 0.109 0.891 7 N -0.385 5.385 8 C 0.024 3.976 9 C -0.161 4.161 10 C -0.206 4.206 11 C 0.066 3.934 12 O -0.118 6.118 13 C -0.546 4.546 14 H 0.098 0.902 15 C -0.198 4.198 16 N -0.522 5.522 17 Si 0.923 3.077 18 H -0.209 1.209 19 H -0.202 1.202 20 H -0.210 1.210 21 C -0.173 4.173 22 C -0.167 4.167 23 C -0.051 4.051 24 O -0.292 6.292 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.226 0.774 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.091 0.909 34 H 0.134 0.866 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.673 10.916 -1.290 19.143 hybrid contribution -1.391 1.017 -0.201 1.735 sum -17.063 11.934 -1.491 20.876 Atomic orbital electron populations 1.21807 0.93245 1.03016 1.02322 1.22948 0.95255 0.95426 0.85217 0.91500 1.23270 0.97639 1.00261 0.98496 1.22043 0.84930 0.99910 0.90960 0.89089 1.44256 1.12340 1.18890 1.63017 1.17402 0.87795 0.91514 1.00914 1.20246 0.92857 0.99705 1.03309 1.21014 0.99323 0.94861 1.05410 1.19097 0.88092 0.90364 0.95861 1.83672 1.22456 1.43510 1.62128 1.22141 0.97505 1.04136 1.30773 0.90223 1.26442 0.99671 0.93960 0.99693 1.70549 1.34604 1.17683 1.29371 0.83062 0.74467 0.75097 0.75107 1.20866 1.20168 1.20966 1.20013 0.91878 1.00539 1.04835 1.20191 0.98262 0.93623 1.04656 1.24077 0.83958 1.00671 0.96351 1.89147 1.27413 1.74475 1.38196 0.91204 0.91922 0.91671 0.89795 0.89992 0.77408 0.87483 0.85334 0.90895 0.86614 0.87020 0.91733 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.52 37.15 0.35 -0.71 16 2 C 0.07 0.63 3.92 -25.96 -0.10 0.53 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.16 -1.40 6.39 -25.16 -0.16 -1.56 16 5 C 0.13 1.44 3.19 -66.36 -0.21 1.23 16 6 H 0.09 1.08 6.40 -51.93 -0.33 0.75 16 7 N -0.75 -9.54 5.26 -50.60 -0.27 -9.81 16 8 C 0.12 2.03 6.66 -83.71 -0.56 1.47 16 9 C -0.14 -2.53 9.89 -39.40 -0.39 -2.92 16 10 C -0.19 -4.09 9.16 -39.42 -0.36 -4.45 16 11 C 0.12 2.88 6.65 -39.09 -0.26 2.62 16 12 O -0.21 -6.08 9.16 -0.05 0.00 -6.08 16 13 C -0.47 -13.44 9.48 30.87 0.29 -13.15 16 14 H 0.08 2.15 5.20 -52.49 -0.27 1.87 16 15 C 0.01 0.19 5.49 -17.52 -0.10 0.09 16 16 N -0.89 -27.09 13.70 55.48 0.76 -26.33 16 17 Si 1.10 24.21 29.92 -169.99 -5.09 19.13 16 18 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 21 C -0.15 -3.21 9.98 -39.42 -0.39 -3.61 16 22 C -0.15 -2.57 9.21 -39.40 -0.36 -2.94 16 23 C 0.03 0.32 7.35 37.93 0.28 0.60 16 24 O -0.37 -4.46 11.34 -35.23 -0.40 -4.86 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.69 7.87 -51.92 -0.41 0.28 16 29 H 0.08 0.64 7.70 -51.93 -0.40 0.24 16 30 H 0.39 4.31 8.39 -40.82 -0.34 3.97 16 31 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.13 2.87 5.63 -52.48 -0.30 2.58 16 33 H 0.28 8.76 7.97 -40.82 -0.33 8.43 16 34 H 0.12 2.33 8.06 -52.48 -0.42 1.90 16 35 H 0.11 1.68 6.20 -52.49 -0.33 1.36 16 36 H 0.06 0.76 8.06 -51.93 -0.42 0.35 16 37 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 307.84 15.07 4.64 4.64 Total: -1.00 -31.67 307.84 -7.20 -38.86 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -4.88 Total: 7.24 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.97 Total: -22.79 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.49 Total: -36.14 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.40 Total: -10.93 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.09 Total: 19.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.67 -7.20 -38.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401959961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.876 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds