Wall clock time and date at job start Mon Mar 30 2020 00:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.27422 * 2 1 4 4 C 1.55204 * 110.45385 * 238.03649 * 2 1 3 5 5 C 1.55308 * 100.82448 * 204.75646 * 4 2 1 6 6 H 1.08999 * 110.84975 * 275.59434 * 5 4 2 7 7 N 1.46497 * 110.84460 * 152.18048 * 5 4 2 8 8 C 1.39784 * 120.00271 * 157.77371 * 7 5 4 9 9 C 1.38943 * 120.00943 * 179.97438 * 8 7 5 10 10 C 1.38014 * 119.99201 * 180.23154 * 9 8 7 11 11 C 1.38893 * 120.00778 * 359.49313 * 10 9 8 12 12 O 1.35796 * 119.99965 * 180.23531 * 11 10 9 13 13 C 1.34809 * 117.00833 * 174.73324 * 12 11 10 14 14 H 1.08003 * 119.99228 * 5.05017 * 13 12 11 15 15 C 1.38614 * 120.00609 * 185.05631 * 13 12 11 16 16 N 1.31589 * 119.99588 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00471 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47302 * 89.99915 * 17 15 13 19 19 H 1.48503 * 109.47671 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.46931 * 330.00138 * 17 15 13 21 21 C 1.38900 * 120.00882 * 0.50727 * 11 10 9 22 22 C 1.38006 * 120.00952 * 359.74664 * 21 11 10 23 23 C 1.54379 * 102.43662 * 33.88799 * 5 4 2 24 24 O 1.43239 * 107.59015 * 338.74494 * 23 5 4 25 25 H 1.09009 * 109.47067 * 299.36861 * 1 2 3 26 26 H 1.08997 * 109.46942 * 59.36471 * 1 2 3 27 27 H 1.08998 * 109.47388 * 179.36591 * 1 2 3 28 28 H 1.08996 * 111.29992 * 86.82678 * 4 2 1 29 29 H 1.09003 * 111.05353 * 322.58376 * 4 2 1 30 30 H 0.97000 * 120.00235 * 337.76971 * 7 5 4 31 31 H 1.08000 * 120.00621 * 359.95602 * 9 8 7 32 32 H 1.08008 * 119.99318 * 179.72823 * 10 9 8 33 33 H 0.97008 * 119.99498 * 180.02562 * 16 15 13 34 34 H 1.08001 * 119.99597 * 179.73159 * 21 11 10 35 35 H 1.07997 * 120.00419 * 179.97438 * 22 21 11 36 36 H 1.09005 * 109.83014 * 98.25813 * 23 5 4 37 37 H 1.09000 * 109.82977 * 219.13734 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0724 -0.7698 -1.2337 5 6 3.4722 -1.2002 -0.7167 6 1 4.2014 -0.4032 -0.8624 7 7 3.9135 -2.4337 -1.3724 8 6 5.2744 -2.7484 -1.4260 9 6 5.6930 -3.9186 -2.0474 10 6 7.0364 -4.2313 -2.0959 11 6 7.9706 -3.3714 -1.5331 12 8 9.2927 -3.6770 -1.5852 13 6 10.1540 -2.7508 -1.1185 14 1 9.7794 -1.8517 -0.6520 15 6 11.5202 -2.9523 -1.2375 16 7 11.9766 -4.0481 -1.8056 17 14 12.7136 -1.6687 -0.5916 18 1 13.0439 -1.9682 0.8249 19 1 13.9555 -1.6933 -1.4053 20 1 12.0899 -0.3239 -0.6807 21 6 7.5523 -2.2016 -0.9119 22 6 6.2088 -1.8908 -0.8584 23 6 3.2125 -1.4393 0.7862 24 8 2.0285 -0.7156 1.1414 25 1 -0.3634 0.5040 0.8957 26 1 -0.3633 0.5237 -0.8842 27 1 -0.3634 -1.0276 -0.0114 28 1 2.1581 -0.1164 -2.1019 29 1 1.4522 -1.6379 -1.4573 30 1 3.2613 -3.0321 -1.7692 31 1 4.9670 -4.5855 -2.4884 32 1 7.3615 -5.1431 -2.5751 33 1 12.9327 -4.1893 -1.8886 34 1 8.2786 -1.5352 -0.4705 35 1 5.8836 -0.9815 -0.3750 36 1 3.0650 -2.5034 0.9712 37 1 4.0585 -1.0765 1.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000401959962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:46 Heat of formation + Delta-G solvation = -43.286316 kcal Electronic energy + Delta-G solvation = -19124.209743 eV Core-core repulsion = 16060.251985 eV Total energy + Delta-G solvation = -3063.957758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.92509 -38.86263 -36.93031 -34.40202 -32.35523 -32.08173 -30.38768 -29.99263 -26.84681 -26.16603 -25.10100 -22.61314 -21.54264 -21.26334 -20.21385 -17.97565 -17.56639 -16.86818 -16.13479 -15.84265 -15.28978 -14.49448 -14.32587 -14.17354 -13.70019 -13.53237 -13.33896 -13.08224 -12.84158 -12.66647 -12.43121 -12.26557 -11.91522 -11.58947 -11.45961 -11.33130 -11.17712 -11.00567 -10.91999 -10.58240 -10.37766 -9.65054 -9.28758 -9.19487 -8.48351 -8.21036 -6.46315 -6.34215 -3.91581 2.16826 2.51792 3.17678 3.18477 3.23054 3.46185 3.84893 4.04743 4.28974 4.56407 4.65205 4.77457 4.95218 5.01023 5.09177 5.18441 5.37753 5.39170 5.44297 5.54231 5.62381 5.71991 5.73458 5.74811 5.86761 5.93031 6.18679 6.25265 6.44797 6.78058 6.87291 6.95027 7.06152 7.31336 7.42350 7.57281 7.91374 8.09754 8.16330 9.11763 9.85481 10.84497 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.003702 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.417239 B = 7562.337307 C = 8129.733550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.071 0.929 4 C -0.158 4.158 5 C 0.131 3.869 6 H 0.091 0.909 7 N -0.747 5.747 8 C 0.118 3.882 9 C -0.140 4.140 10 C -0.150 4.150 11 C 0.116 3.884 12 O -0.187 6.187 13 C -0.387 4.387 14 H 0.088 0.912 15 C 0.036 3.964 16 N -0.868 5.868 17 Si 0.938 3.062 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.269 1.269 21 C -0.192 4.192 22 C -0.143 4.143 23 C 0.032 3.968 24 O -0.382 6.382 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.393 0.607 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.267 0.733 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.074 0.926 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.738 6.974 1.368 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.018 3.982 3 H 0.089 0.911 4 C -0.197 4.197 5 C 0.023 3.977 6 H 0.109 0.891 7 N -0.383 5.383 8 C 0.021 3.979 9 C -0.162 4.162 10 C -0.170 4.170 11 C 0.063 3.937 12 O -0.092 6.092 13 C -0.464 4.464 14 H 0.106 0.894 15 C -0.167 4.167 16 N -0.505 5.505 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.193 1.193 21 C -0.211 4.211 22 C -0.165 4.165 23 C -0.046 4.046 24 O -0.301 6.301 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.227 0.773 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.077 0.923 34 H 0.145 0.855 35 H 0.124 0.876 36 H 0.093 0.907 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -18.439 6.836 1.521 19.724 hybrid contribution 0.512 0.475 0.042 0.699 sum -17.927 7.310 1.563 19.423 Atomic orbital electron populations 1.21876 0.93710 1.02786 1.02358 1.22917 0.94882 0.95622 0.84759 0.91085 1.23585 0.96063 1.01307 0.98697 1.22182 0.95525 0.88878 0.91136 0.89080 1.44076 1.04180 1.23907 1.66099 1.17390 0.83198 0.95664 1.01690 1.20110 0.95010 0.96713 1.04364 1.20013 0.91111 1.00831 1.05002 1.19248 0.86002 0.93194 0.95255 1.83984 1.10286 1.41591 1.73335 1.21236 0.86298 1.00574 1.38305 0.89431 1.25221 0.96591 0.97741 0.97116 1.70056 1.14272 1.24974 1.41176 0.85760 0.79476 0.79778 0.78672 1.20024 1.20384 1.19345 1.21006 0.95280 0.99390 1.05464 1.20307 0.92438 0.99279 1.04442 1.23791 0.87440 0.97144 0.96240 1.88425 1.42779 1.65130 1.33769 0.91841 0.91272 0.91967 0.89445 0.89965 0.77304 0.87124 0.86389 0.92266 0.85498 0.87609 0.90738 0.91127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.63 37.16 0.36 -0.76 16 2 C 0.08 0.70 4.07 -25.56 -0.10 0.60 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.16 -1.39 6.24 -24.34 -0.15 -1.55 16 5 C 0.13 1.48 2.99 -65.99 -0.20 1.29 16 6 H 0.09 1.09 6.52 -51.93 -0.34 0.75 16 7 N -0.75 -9.62 5.30 -50.24 -0.27 -9.89 16 8 C 0.12 1.98 6.66 -83.71 -0.56 1.42 16 9 C -0.14 -2.46 9.89 -39.40 -0.39 -2.85 16 10 C -0.15 -3.15 9.98 -39.42 -0.39 -3.55 16 11 C 0.12 2.81 6.65 -39.09 -0.26 2.55 16 12 O -0.19 -5.41 9.75 -0.04 0.00 -5.41 16 13 C -0.39 -10.99 9.48 30.87 0.29 -10.70 16 14 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 15 C 0.04 1.02 5.49 -17.52 -0.10 0.92 16 16 N -0.87 -25.95 13.67 55.48 0.76 -25.19 16 17 Si 0.94 20.89 29.55 -169.99 -5.02 15.86 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 21 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 22 C -0.14 -2.61 9.22 -39.40 -0.36 -2.97 16 23 C 0.03 0.39 7.56 37.88 0.29 0.68 16 24 O -0.38 -4.71 11.04 -35.23 -0.39 -5.10 16 25 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 30 H 0.39 4.35 8.55 -40.82 -0.35 4.00 16 31 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 32 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.13 2.78 5.63 -52.49 -0.30 2.49 16 35 H 0.11 1.68 6.24 -52.49 -0.33 1.36 16 36 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -31.43 309.01 -7.13 -38.55 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.93 Total: 5.97 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.94 Total: -19.45 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.49 Total: -35.08 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.39 Total: -10.51 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.43 -7.13 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401959962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.733 kcal (2) G-P(sol) polarization free energy of solvation -31.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds