Wall clock time and date at job start Mon Mar 30 2020 00:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.27422 * 2 1 4 4 C 1.55204 * 110.45385 * 238.03649 * 2 1 3 5 5 C 1.55308 * 100.82448 * 204.75646 * 4 2 1 6 6 H 1.08999 * 110.84975 * 275.59434 * 5 4 2 7 7 N 1.46497 * 110.84460 * 152.18048 * 5 4 2 8 8 C 1.39784 * 120.00271 * 157.77371 * 7 5 4 9 9 C 1.38943 * 120.00943 * 179.97438 * 8 7 5 10 10 C 1.38014 * 119.99201 * 180.23154 * 9 8 7 11 11 C 1.38893 * 120.00778 * 359.49313 * 10 9 8 12 12 O 1.35796 * 119.99965 * 180.23531 * 11 10 9 13 13 C 1.34809 * 117.00833 * 174.73324 * 12 11 10 14 14 H 1.08003 * 119.99228 * 5.05017 * 13 12 11 15 15 C 1.38614 * 120.00609 * 185.05631 * 13 12 11 16 16 N 1.31589 * 119.99588 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00471 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47302 * 89.99915 * 17 15 13 19 19 H 1.48503 * 109.47671 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.46931 * 330.00138 * 17 15 13 21 21 C 1.38900 * 120.00882 * 0.50727 * 11 10 9 22 22 C 1.38006 * 120.00952 * 359.74664 * 21 11 10 23 23 C 1.54379 * 102.43662 * 33.88799 * 5 4 2 24 24 O 1.43239 * 107.59015 * 338.74494 * 23 5 4 25 25 H 1.09009 * 109.47067 * 299.36861 * 1 2 3 26 26 H 1.08997 * 109.46942 * 59.36471 * 1 2 3 27 27 H 1.08998 * 109.47388 * 179.36591 * 1 2 3 28 28 H 1.08996 * 111.29992 * 86.82678 * 4 2 1 29 29 H 1.09003 * 111.05353 * 322.58376 * 4 2 1 30 30 H 0.97000 * 120.00235 * 337.76971 * 7 5 4 31 31 H 1.08000 * 120.00621 * 359.95602 * 9 8 7 32 32 H 1.08008 * 119.99318 * 179.72823 * 10 9 8 33 33 H 0.97008 * 119.99498 * 180.02562 * 16 15 13 34 34 H 1.08001 * 119.99597 * 179.73159 * 21 11 10 35 35 H 1.07997 * 120.00419 * 179.97438 * 22 21 11 36 36 H 1.09005 * 109.83014 * 98.25813 * 23 5 4 37 37 H 1.09000 * 109.82977 * 219.13734 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0724 -0.7698 -1.2337 5 6 3.4722 -1.2002 -0.7167 6 1 4.2014 -0.4032 -0.8624 7 7 3.9135 -2.4337 -1.3724 8 6 5.2744 -2.7484 -1.4260 9 6 5.6930 -3.9186 -2.0474 10 6 7.0364 -4.2313 -2.0959 11 6 7.9706 -3.3714 -1.5331 12 8 9.2927 -3.6770 -1.5852 13 6 10.1540 -2.7508 -1.1185 14 1 9.7794 -1.8517 -0.6520 15 6 11.5202 -2.9523 -1.2375 16 7 11.9766 -4.0481 -1.8056 17 14 12.7136 -1.6687 -0.5916 18 1 13.0439 -1.9682 0.8249 19 1 13.9555 -1.6933 -1.4053 20 1 12.0899 -0.3239 -0.6807 21 6 7.5523 -2.2016 -0.9119 22 6 6.2088 -1.8908 -0.8584 23 6 3.2125 -1.4393 0.7862 24 8 2.0285 -0.7156 1.1414 25 1 -0.3634 0.5040 0.8957 26 1 -0.3633 0.5237 -0.8842 27 1 -0.3634 -1.0276 -0.0114 28 1 2.1581 -0.1164 -2.1019 29 1 1.4522 -1.6379 -1.4573 30 1 3.2613 -3.0321 -1.7692 31 1 4.9670 -4.5855 -2.4884 32 1 7.3615 -5.1431 -2.5751 33 1 12.9327 -4.1893 -1.8886 34 1 8.2786 -1.5352 -0.4705 35 1 5.8836 -0.9815 -0.3750 36 1 3.0650 -2.5034 0.9712 37 1 4.0585 -1.0765 1.3699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401959962.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:46 Heat of formation + Delta-G solvation = -64.474101 kcal Electronic energy + Delta-G solvation = -19125.128514 eV Core-core repulsion = 16060.251985 eV Total energy + Delta-G solvation = -3064.876529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.01372 -40.36245 -38.53602 -35.73840 -34.11321 -33.06385 -31.86687 -31.25639 -28.32840 -27.06697 -26.92988 -24.02203 -22.90211 -22.18433 -21.44355 -19.83661 -19.05560 -18.02954 -17.31923 -17.16058 -16.32761 -16.19157 -15.83016 -15.44793 -15.34243 -14.87660 -14.59734 -14.29794 -14.08580 -13.94507 -13.51098 -13.40688 -13.23928 -13.00966 -12.76466 -12.65382 -12.34999 -12.31192 -12.10616 -12.03013 -11.75043 -11.09520 -10.92357 -10.51367 -10.21281 -9.78961 -8.40000 -7.98603 -6.03870 0.57619 0.90518 1.36636 1.46149 1.53875 2.22217 2.42664 2.89218 2.96687 3.23345 3.49124 3.67049 3.84159 3.91520 4.04207 4.16025 4.19438 4.26299 4.44614 4.56256 4.64743 4.71127 4.76354 4.82256 4.83903 4.97263 5.01790 5.11354 5.17429 5.24402 5.31561 5.49466 5.53543 5.77545 5.95640 6.05296 6.10618 6.54680 6.98994 7.06009 7.92358 8.84475 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.003702 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.417239 B = 7562.337307 C = 8129.733550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.079 0.921 4 C -0.146 4.146 5 C 0.125 3.875 6 H 0.090 0.910 7 N -0.731 5.731 8 C 0.149 3.851 9 C -0.136 4.136 10 C -0.155 4.155 11 C 0.065 3.935 12 O -0.242 6.242 13 C -0.406 4.406 14 H 0.098 0.902 15 C -0.028 4.028 16 N -0.927 5.927 17 Si 1.016 2.984 18 H -0.265 1.265 19 H -0.272 1.272 20 H -0.254 1.254 21 C -0.196 4.196 22 C -0.148 4.148 23 C 0.034 3.966 24 O -0.401 6.401 25 H 0.060 0.940 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.407 0.593 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.133 0.867 36 H 0.067 0.933 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.685 8.762 1.380 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.097 0.903 4 C -0.184 4.184 5 C 0.018 3.982 6 H 0.108 0.892 7 N -0.366 5.366 8 C 0.049 3.951 9 C -0.158 4.158 10 C -0.175 4.175 11 C 0.015 3.985 12 O -0.150 6.150 13 C -0.483 4.483 14 H 0.115 0.885 15 C -0.224 4.224 16 N -0.566 5.566 17 Si 0.836 3.164 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.177 1.177 21 C -0.215 4.215 22 C -0.170 4.170 23 C -0.044 4.044 24 O -0.320 6.320 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.111 0.889 30 H 0.244 0.756 31 H 0.168 0.832 32 H 0.133 0.867 33 H 0.079 0.921 34 H 0.135 0.865 35 H 0.150 0.850 36 H 0.085 0.915 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.499 8.644 1.537 23.223 hybrid contribution 0.986 -0.054 0.045 0.988 sum -20.514 8.590 1.581 22.296 Atomic orbital electron populations 1.21884 0.92296 1.02964 1.03312 1.23174 0.96050 0.95742 0.83971 0.90338 1.23561 0.93966 1.01921 0.98941 1.22326 0.97181 0.87868 0.90810 0.89166 1.44112 1.02648 1.24683 1.65155 1.17504 0.84849 0.94287 0.98504 1.20441 0.94083 0.97472 1.03818 1.20256 0.92289 1.00362 1.04582 1.19763 0.85109 0.95506 0.98124 1.83932 1.12296 1.42935 1.75792 1.21743 0.87075 1.01053 1.38412 0.88488 1.26519 0.98324 1.00214 0.97354 1.70209 1.14738 1.27699 1.43975 0.84621 0.76551 0.77061 0.78190 1.18971 1.19721 1.17730 1.21044 0.96808 0.98487 1.05192 1.20514 0.91149 1.00627 1.04685 1.23687 0.87473 0.96750 0.96515 1.88421 1.42689 1.65458 1.35470 0.92121 0.89126 0.92194 0.87651 0.88915 0.75588 0.83213 0.86656 0.92127 0.86533 0.84950 0.91487 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.63 71.98 0.69 -1.01 16 2 C 0.07 1.03 4.07 31.35 0.13 1.16 16 3 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.15 -1.94 6.24 32.14 0.20 -1.74 16 5 C 0.13 2.38 2.99 46.25 0.14 2.52 16 6 H 0.09 1.81 6.52 -2.39 -0.02 1.79 16 7 N -0.73 -15.80 5.30 -312.87 -1.66 -17.46 16 8 C 0.15 4.54 6.66 38.21 0.25 4.79 16 9 C -0.14 -4.45 9.89 22.39 0.22 -4.23 16 10 C -0.16 -6.59 9.98 22.37 0.22 -6.37 16 11 C 0.06 3.26 6.65 22.59 0.15 3.41 16 12 O -0.24 -14.86 9.75 -23.04 -0.22 -15.09 16 13 C -0.41 -24.21 9.48 67.91 0.64 -23.57 16 14 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 15 C -0.03 -1.62 5.49 84.82 0.47 -1.16 16 16 N -0.93 -58.24 13.67 21.61 0.30 -57.94 16 17 Si 1.02 43.93 29.55 68.60 2.03 45.95 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.20 -8.64 9.16 22.37 0.20 -8.44 16 22 C -0.15 -5.13 9.22 22.39 0.21 -4.92 16 23 C 0.03 0.75 7.56 72.45 0.55 1.29 16 24 O -0.40 -8.90 11.04 -148.98 -1.65 -10.55 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.73 16 26 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.08 7.91 -2.39 -0.02 1.06 16 30 H 0.41 6.99 8.55 -92.71 -0.79 6.20 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 33 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 34 H 0.12 5.27 5.63 -2.91 -0.02 5.26 16 35 H 0.13 3.86 6.24 -2.91 -0.02 3.85 16 36 H 0.07 1.55 8.02 -2.38 -0.02 1.53 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -72.84 309.01 3.16 -69.68 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.29 Total: 23.66 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 4.08 Total: -38.26 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.36 Total: -75.40 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -1.87 Total: -25.63 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.84 3.16 -69.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401959962.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.203 kcal (2) G-P(sol) polarization free energy of solvation -72.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds