Wall clock time and date at job start Mon Mar 30 2020 00:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.86631 * 2 1 4 4 C 1.54103 * 109.87883 * 238.99304 * 2 1 3 5 5 C 1.54808 * 104.18632 * 238.54014 * 4 2 1 6 6 H 1.09009 * 110.90329 * 97.35286 * 5 4 2 7 7 N 1.46494 * 110.90913 * 220.91918 * 5 4 2 8 8 C 1.39785 * 120.00315 * 202.07612 * 7 5 4 9 9 C 1.38947 * 120.00961 * 180.02562 * 8 7 5 10 10 C 1.38011 * 119.99507 * 179.97438 * 9 8 7 11 11 C 1.38894 * 120.00471 * 359.97438 * 10 9 8 12 12 O 1.35799 * 119.99238 * 180.02562 * 11 10 9 13 13 C 1.34816 * 116.99847 * 5.54144 * 12 11 10 14 14 H 1.07999 * 120.00151 * 354.94468 * 13 12 11 15 15 C 1.38624 * 119.99700 * 174.93939 * 13 12 11 16 16 N 1.31577 * 120.00117 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99815 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47396 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.47415 * 300.00433 * 17 15 13 20 20 H 1.48499 * 109.47211 * 60.00125 * 17 15 13 21 21 C 1.38892 * 120.01446 * 0.27341 * 11 10 9 22 22 C 1.38016 * 120.00807 * 359.45377 * 21 11 10 23 23 C 1.54996 * 102.12730 * 339.14125 * 5 4 2 24 24 O 1.43744 * 109.87807 * 121.16081 * 2 1 3 25 25 H 1.08998 * 109.46514 * 181.00698 * 1 2 3 26 26 H 1.08998 * 109.47319 * 301.00564 * 1 2 3 27 27 H 1.08996 * 109.46927 * 61.00962 * 1 2 3 28 28 H 1.08999 * 110.48551 * 119.87036 * 4 2 1 29 29 H 1.08996 * 110.48583 * 357.22437 * 4 2 1 30 30 H 0.96997 * 120.00228 * 22.08090 * 7 5 4 31 31 H 1.08006 * 119.99824 * 359.97438 * 9 8 7 32 32 H 1.08003 * 119.99574 * 180.02562 * 10 9 8 33 33 H 0.97004 * 120.00267 * 359.97438 * 16 15 13 34 34 H 1.07998 * 119.99903 * 179.70364 * 21 11 10 35 35 H 1.07989 * 120.00711 * 180.24887 * 22 21 11 36 36 H 1.08993 * 110.61790 * 155.50271 * 23 5 4 37 37 H 1.08993 * 110.61508 * 278.50433 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0540 -0.7465 -1.2421 5 6 2.9197 -1.8904 -0.6601 6 1 2.3543 -2.8213 -0.6142 7 7 4.1475 -2.0654 -1.4397 8 6 4.8323 -3.2835 -1.4013 9 6 5.9972 -3.4494 -2.1402 10 6 6.6733 -4.6519 -2.1016 11 6 6.1897 -5.6961 -1.3238 12 8 6.8554 -6.8790 -1.2856 13 6 8.0370 -6.9375 -1.9321 14 1 8.3750 -6.0947 -2.5167 15 6 8.8182 -8.0794 -1.8463 16 7 8.4063 -9.1064 -1.1343 17 14 10.4551 -8.1607 -2.7426 18 1 11.0914 -9.4790 -2.4928 19 1 10.2304 -7.9884 -4.2004 20 1 11.3447 -7.0795 -2.2478 21 6 5.0225 -5.5322 -0.5890 22 6 4.3489 -4.3280 -0.6228 23 6 3.2381 -1.3660 0.7632 24 8 2.0188 -0.6995 1.1568 25 1 -0.3632 -1.0275 0.0181 26 1 -0.3634 0.5294 0.8808 27 1 -0.3633 0.4981 -0.8989 28 1 2.6620 -0.0834 -1.8575 29 1 1.2247 -1.1524 -1.8213 30 1 4.4855 -1.3361 -1.9825 31 1 6.3735 -2.6373 -2.7447 32 1 7.5791 -4.7808 -2.6757 33 1 7.5561 -9.0644 -0.6691 34 1 4.6440 -6.3458 0.0119 35 1 3.4436 -4.1994 -0.0483 36 1 3.4583 -2.1939 1.4370 37 1 4.0688 -0.6610 0.7355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000401959964.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:48 Heat of formation + Delta-G solvation = -70.647435 kcal Electronic energy + Delta-G solvation = -19127.179984 eV Core-core repulsion = 16062.035759 eV Total energy + Delta-G solvation = -3065.144225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.07858 -40.45496 -38.66620 -35.81133 -34.11438 -33.10832 -32.01311 -31.12559 -28.29258 -26.91440 -26.67922 -24.02299 -23.06817 -22.25961 -21.73815 -20.08559 -18.93304 -18.00508 -17.60048 -16.67427 -16.52878 -16.36423 -15.66437 -15.57925 -15.40496 -15.23056 -14.73736 -14.51696 -14.16304 -13.81579 -13.49704 -13.33929 -13.11116 -12.85701 -12.67422 -12.60122 -12.35217 -12.08817 -11.92921 -11.90583 -11.73052 -11.20574 -10.94500 -10.70299 -10.22864 -9.86525 -8.87090 -8.05399 -6.12894 0.49689 0.83195 1.50333 1.63419 1.80516 2.36701 2.41906 2.88912 3.05514 3.18684 3.47469 3.51211 3.78131 3.93821 4.03294 4.08520 4.16215 4.20860 4.44065 4.49365 4.58013 4.65542 4.71368 4.80966 4.82947 4.92718 4.97976 5.10767 5.14379 5.21789 5.30500 5.43934 5.46879 5.74604 5.84359 5.93178 6.28976 6.51695 6.94582 6.95769 7.76591 8.59021 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.057187 B = 0.003405 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.507826 B = 8222.302306 C = 8472.148173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.066 3.934 3 H 0.078 0.922 4 C -0.149 4.149 5 C 0.125 3.875 6 H 0.087 0.913 7 N -0.730 5.730 8 C 0.154 3.846 9 C -0.140 4.140 10 C -0.191 4.191 11 C 0.065 3.935 12 O -0.262 6.262 13 C -0.482 4.482 14 H 0.089 0.911 15 C -0.050 4.050 16 N -0.925 5.925 17 Si 1.145 2.855 18 H -0.275 1.275 19 H -0.260 1.260 20 H -0.261 1.261 21 C -0.156 4.156 22 C -0.145 4.145 23 C 0.030 3.970 24 O -0.395 6.395 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.407 0.593 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.258 0.742 34 H 0.113 0.887 35 H 0.142 0.858 36 H 0.086 0.914 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 20.735 -1.729 24.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 H 0.096 0.904 4 C -0.187 4.187 5 C 0.018 3.982 6 H 0.105 0.895 7 N -0.365 5.365 8 C 0.053 3.947 9 C -0.162 4.162 10 C -0.211 4.211 11 C 0.016 3.984 12 O -0.171 6.171 13 C -0.558 4.558 14 H 0.106 0.894 15 C -0.245 4.245 16 N -0.561 5.561 17 Si 0.961 3.039 18 H -0.200 1.200 19 H -0.185 1.185 20 H -0.186 1.186 21 C -0.176 4.176 22 C -0.167 4.167 23 C -0.048 4.048 24 O -0.314 6.314 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.244 0.756 31 H 0.162 0.838 32 H 0.136 0.864 33 H 0.066 0.934 34 H 0.132 0.868 35 H 0.159 0.841 36 H 0.105 0.895 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.468 19.535 -1.598 22.708 hybrid contribution -1.056 0.775 0.234 1.330 sum -12.524 20.310 -1.364 23.899 Atomic orbital electron populations 1.21964 0.92677 1.02858 1.03273 1.22889 0.96074 0.95990 0.84156 0.90437 1.23216 1.00526 0.96777 0.98210 1.22336 0.85897 0.99523 0.90413 0.89470 1.44160 1.26717 1.12043 1.53596 1.17504 0.92737 0.87363 0.97051 1.20515 0.95706 0.97228 1.02799 1.21084 1.02577 0.94245 1.03199 1.19629 0.94328 0.86548 0.97855 1.83640 1.33635 1.30252 1.69614 1.22527 0.96049 1.05898 1.31348 0.89359 1.28331 1.07381 0.90249 0.98573 1.70718 1.22744 1.32047 1.30580 0.82586 0.68685 0.77383 0.75271 1.20017 1.18477 1.18556 1.20236 0.95531 0.99132 1.02690 1.20465 1.01448 0.91638 1.03135 1.24097 0.87487 0.96661 0.96558 1.88902 1.40034 1.67982 1.34464 0.92344 0.92155 0.89228 0.88522 0.88580 0.75589 0.83847 0.86380 0.93354 0.86844 0.84081 0.89527 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.36 71.98 0.67 -1.11 16 2 C 0.07 0.97 4.06 30.97 0.13 1.10 16 3 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.15 -1.92 6.39 31.58 0.20 -1.72 16 5 C 0.13 2.32 3.13 46.29 0.14 2.46 16 6 H 0.09 1.77 6.53 -2.38 -0.02 1.75 16 7 N -0.73 -15.32 5.39 -312.68 -1.68 -17.01 16 8 C 0.15 4.65 6.66 38.21 0.25 4.90 16 9 C -0.14 -4.72 9.89 22.39 0.22 -4.50 16 10 C -0.19 -8.40 9.16 22.37 0.20 -8.20 16 11 C 0.07 3.30 6.65 22.58 0.15 3.45 16 12 O -0.26 -16.00 9.16 -23.14 -0.21 -16.21 16 13 C -0.48 -28.87 9.48 67.91 0.64 -28.22 16 14 H 0.09 4.90 5.20 -2.91 -0.02 4.89 16 15 C -0.05 -2.98 5.49 84.82 0.47 -2.51 16 16 N -0.92 -59.46 13.70 21.61 0.30 -59.17 16 17 Si 1.14 49.21 29.92 68.60 2.05 51.26 16 18 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 C -0.16 -6.67 9.98 22.37 0.22 -6.45 16 22 C -0.14 -4.85 9.22 22.39 0.21 -4.65 16 23 C 0.03 0.62 7.41 72.67 0.54 1.16 16 24 O -0.39 -8.44 11.19 -148.98 -1.67 -10.11 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.95 7.75 -2.39 -0.02 0.93 16 29 H 0.10 1.08 7.70 -2.39 -0.02 1.06 16 30 H 0.41 6.71 8.38 -92.71 -0.78 5.94 16 31 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 32 H 0.12 5.34 5.63 -2.91 -0.02 5.32 16 33 H 0.26 17.31 7.97 -92.71 -0.74 16.58 16 34 H 0.11 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.14 3.90 6.24 -2.92 -0.02 3.88 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -73.48 307.90 3.18 -70.30 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.34 Total: 25.22 kcal Atomic # 6 Polarization: -48.34 SS G_CDS: 4.06 Total: -44.29 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -1.39 Total: -76.18 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.88 Total: -26.32 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.26 kcal Total: -73.48 3.18 -70.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000401959964.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.346 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds