Wall clock time and date at job start Mon Mar 30 2020 00:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99994 * 2 1 4 4 C 1.53001 * 109.47178 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47499 * 59.99673 * 3 2 1 6 6 N 1.46503 * 109.47127 * 65.00086 * 5 3 2 7 7 C 1.34774 * 120.00595 * 179.97438 * 6 5 3 8 8 O 1.21685 * 119.99295 * 359.97438 * 7 6 5 9 9 C 1.46371 * 120.00207 * 179.97438 * 7 6 5 10 10 H 1.07995 * 120.00233 * 0.02562 * 9 7 6 11 11 C 1.40048 * 119.99841 * 179.97438 * 9 7 6 12 12 N 1.30673 * 120.00159 * 0.02562 * 11 9 7 13 13 Si 1.86801 * 119.99965 * 180.02562 * 11 9 7 14 14 H 1.48492 * 109.47033 * 0.02562 * 13 11 9 15 15 H 1.48506 * 109.47023 * 120.00197 * 13 11 9 16 16 H 1.48496 * 109.47430 * 240.00143 * 13 11 9 17 17 C 1.50706 * 109.47283 * 299.99700 * 3 2 1 18 18 C 1.38237 * 119.99744 * 330.00765 * 17 3 2 19 19 C 1.38235 * 119.99712 * 180.02562 * 18 17 3 20 20 C 1.38234 * 120.00220 * 359.94731 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38234 * 120.00223 * 150.01975 * 17 3 2 23 23 H 1.09002 * 109.46757 * 300.00116 * 1 2 3 24 24 H 1.08999 * 109.46857 * 59.99738 * 1 2 3 25 25 H 1.08996 * 109.47108 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47154 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46664 * 299.99653 * 4 3 2 28 28 H 1.08998 * 109.47218 * 59.99158 * 4 3 2 29 29 H 1.09007 * 109.47277 * 184.99609 * 5 3 2 30 30 H 1.08997 * 109.47386 * 305.00452 * 5 3 2 31 31 H 0.97006 * 119.99700 * 0.02562 * 6 5 3 32 32 H 0.96995 * 120.00202 * 179.97438 * 12 11 9 33 33 H 1.08005 * 120.00088 * 359.97438 * 18 17 3 34 34 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 37 37 H 1.07998 * 119.99975 * 0.02562 * 22 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 1.5588 2.0648 1.2491 6 7 2.0923 1.4030 2.4424 7 6 1.8227 1.8997 3.6659 8 8 1.1364 2.8981 3.7794 9 6 2.3553 1.2382 4.8580 10 1 2.9647 0.3523 4.7572 11 6 2.0755 1.7546 6.1294 12 7 1.3385 2.8268 6.2514 13 14 2.7558 0.9108 7.6507 14 1 3.5539 -0.2737 7.2446 15 1 3.6220 1.8587 8.3969 16 1 1.6328 0.4771 8.5202 17 6 1.5657 2.0533 -1.2305 18 6 1.2798 1.3627 -2.3934 19 6 0.8725 2.0487 -3.5223 20 6 0.7500 3.4252 -3.4880 21 6 1.0405 4.1162 -2.3265 22 6 1.4440 3.4298 -1.1965 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.9788 2.1803 -0.0011 27 1 3.8574 0.6436 0.8892 28 1 3.8568 0.6437 -0.8908 29 1 1.9293 3.0890 1.2055 30 1 0.4698 2.0739 1.2951 31 1 2.6404 0.6078 2.3517 32 1 1.1443 3.1843 7.1319 33 1 1.3754 0.2872 -2.4202 34 1 0.6495 1.5093 -4.4309 35 1 0.4314 3.9611 -4.3699 36 1 0.9491 5.1921 -2.3010 37 1 1.6679 3.9694 -0.2881 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456135437.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:07:40 Heat of formation + Delta-G solvation = -57.209871 kcal Electronic energy + Delta-G solvation = -19948.472705 eV Core-core repulsion = 16883.911176 eV Total energy + Delta-G solvation = -3064.561529 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.19036 -37.87393 -36.77567 -33.78565 -32.48745 -31.65350 -30.87265 -29.39057 -27.20517 -26.04397 -25.25271 -23.02253 -22.28024 -20.03160 -19.37590 -17.55376 -17.12327 -16.06041 -15.43522 -15.30474 -15.08107 -14.64076 -14.31471 -13.96405 -13.87274 -13.47262 -13.23112 -12.81509 -12.48998 -12.31684 -12.25085 -11.86538 -11.67279 -11.36611 -11.25308 -11.09847 -10.97378 -10.73042 -10.44699 -10.38711 -10.16639 -9.36782 -8.89026 -8.83799 -8.72511 -7.59492 -7.45751 -6.16556 -4.61157 1.32441 1.40984 3.14567 3.22815 3.27552 3.76721 3.90709 4.13500 4.56240 4.61376 4.88860 4.98924 5.07203 5.15034 5.23407 5.28559 5.49851 5.58263 5.62561 5.68462 5.81451 5.84474 5.90342 5.95176 6.02798 6.06504 6.27906 6.36616 6.45010 6.49558 6.53138 6.58809 6.99583 7.40153 7.46179 7.97395 8.12230 8.36476 9.05266 9.57398 10.62498 10.81258 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036170 B = 0.004594 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.936478 B = 6092.910512 C = 6405.168282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.369 6.369 3 C 0.144 3.856 4 C -0.130 4.130 5 C 0.113 3.887 6 N -0.760 5.760 7 C 0.554 3.446 8 O -0.583 6.583 9 C -0.544 4.544 10 H 0.068 0.932 11 C 0.088 3.912 12 N -0.769 5.769 13 Si 0.907 3.093 14 H -0.264 1.264 15 H -0.276 1.276 16 H -0.277 1.277 17 C -0.102 4.102 18 C -0.103 4.103 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.121 4.121 22 C -0.109 4.109 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.383 0.617 32 H 0.267 0.733 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.762 -2.623 -16.714 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.288 6.288 3 C 0.104 3.896 4 C -0.187 4.187 5 C -0.013 4.013 6 N -0.416 5.416 7 C 0.358 3.642 8 O -0.467 6.467 9 C -0.581 4.581 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.398 5.398 13 Si 0.732 3.268 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.202 1.202 17 C -0.103 4.103 18 C -0.121 4.121 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.139 4.139 22 C -0.127 4.127 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.216 0.784 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.272 -1.911 -16.503 16.615 hybrid contribution 0.257 -0.495 0.647 0.854 sum 0.529 -2.406 -15.856 16.046 Atomic orbital electron populations 1.22829 0.81376 1.02344 1.00793 1.87920 1.19787 1.26366 1.94727 1.20611 0.94629 0.83097 0.91214 1.21709 0.91225 1.02866 1.02926 1.21471 0.98651 0.96080 0.85072 1.46084 1.58128 1.32490 1.04941 1.18232 0.80410 0.84068 0.81455 1.90592 1.42455 1.27732 1.85873 1.20916 1.34294 1.13176 0.89704 0.91380 1.25705 0.93437 0.94048 0.99990 1.70035 1.28219 1.17682 1.23870 0.86332 0.79179 0.79935 0.81401 1.18750 1.20198 1.20205 1.20391 0.99925 0.94253 0.95750 1.21005 0.98697 1.00291 0.92104 1.21106 1.00697 0.94449 0.98170 1.21144 1.00494 0.94484 0.98048 1.21157 0.99725 0.99934 0.93072 1.21297 0.98692 0.93837 0.98859 0.93023 0.93966 0.89929 0.90920 0.90759 0.92062 0.92279 0.92840 0.78378 0.92235 0.85598 0.86269 0.86366 0.86026 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.05 101.05 1.02 1.35 16 2 O -0.37 -5.84 9.48 -35.23 -0.33 -6.18 16 3 C 0.14 2.25 0.64 -91.77 -0.06 2.19 16 4 C -0.13 -1.84 8.60 37.16 0.32 -1.52 16 5 C 0.11 2.21 3.87 -4.04 -0.02 2.20 16 6 N -0.76 -17.29 5.19 -61.72 -0.32 -17.61 16 7 C 0.55 15.94 7.75 -12.99 -0.10 15.84 16 8 O -0.58 -19.04 15.02 5.20 0.08 -18.96 16 9 C -0.54 -15.53 9.54 -35.63 -0.34 -15.87 16 10 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 11 C 0.09 2.47 5.50 -17.37 -0.10 2.37 16 12 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 13 Si 0.91 20.31 29.56 -169.99 -5.02 15.29 16 14 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 16 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 17 C -0.10 -1.44 4.02 -104.62 -0.42 -1.86 16 18 C -0.10 -1.28 7.77 -39.58 -0.31 -1.59 16 19 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 20 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 21 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 22 C -0.11 -1.50 9.14 -39.58 -0.36 -1.87 16 23 H 0.05 0.86 6.31 -51.93 -0.33 0.53 16 24 H 0.04 0.56 6.04 -51.93 -0.31 0.25 16 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 1.09 6.58 -51.93 -0.34 0.75 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.20 6.21 -51.93 -0.32 0.87 16 30 H 0.05 1.13 6.29 -51.93 -0.33 0.81 16 31 H 0.38 7.94 6.97 -40.82 -0.28 7.66 16 32 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 33 H 0.13 1.50 7.40 -52.48 -0.39 1.11 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.13 1.88 6.05 -52.49 -0.32 1.56 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -34.28 305.98 -6.60 -40.88 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -4.71 Total: 8.66 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.56 Total: -4.09 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.34 Total: -40.21 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.26 Total: -25.14 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.28 -6.60 -40.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456135437.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.335 kcal (2) G-P(sol) polarization free energy of solvation -34.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds