Wall clock time and date at job start Sun Mar 29 2020 23:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 H 1.08995 * 109.46879 * 55.52451 * 3 2 1 5 5 O 1.42898 * 109.47299 * 295.52189 * 3 2 1 6 6 C 1.42901 * 114.00187 * 150.72799 * 5 3 2 7 7 C 1.50696 * 109.47061 * 175.52442 * 3 2 1 8 8 O 1.21279 * 120.00303 * 120.00037 * 7 3 2 9 9 N 1.34781 * 119.99624 * 300.00045 * 7 3 2 10 10 C 1.39944 * 119.99685 * 174.95042 * 9 7 3 11 11 C 1.39291 * 119.94598 * 327.38140 * 10 9 7 12 12 C 1.38489 * 120.42192 * 179.76349 * 11 10 9 13 13 C 1.37677 * 120.32677 * 0.51056 * 12 11 10 14 14 C 1.40744 * 119.88345 * 359.74616 * 13 12 11 15 15 C 1.41412 * 120.21054 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99716 * 26.46930 * 15 14 13 17 17 C 1.39927 * 120.00296 * 206.46673 * 15 14 13 18 18 N 1.30834 * 119.99564 * 13.19831 * 17 15 14 19 19 Si 1.86791 * 120.00345 * 193.20157 * 17 15 14 20 20 H 1.48502 * 109.47349 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47340 * 120.00015 * 19 17 15 22 22 H 1.48503 * 109.47075 * 240.00072 * 19 17 15 23 23 C 1.38244 * 119.94543 * 147.65402 * 10 9 7 24 24 H 1.08996 * 109.47186 * 65.14886 * 1 2 3 25 25 H 1.09005 * 109.46503 * 185.15100 * 1 2 3 26 26 H 1.09002 * 109.46901 * 305.14385 * 1 2 3 27 27 H 1.08999 * 109.46991 * 240.00141 * 2 1 3 28 28 H 1.08995 * 109.47171 * 120.00455 * 2 1 3 29 29 H 1.09001 * 109.47581 * 175.13155 * 6 5 3 30 30 H 1.08999 * 109.46803 * 55.12721 * 6 5 3 31 31 H 1.09002 * 109.46975 * 295.13339 * 6 5 3 32 32 H 0.96996 * 120.00483 * 354.94799 * 9 7 3 33 33 H 1.07996 * 119.78944 * 0.02562 * 11 10 9 34 34 H 1.08006 * 119.83487 * 180.23127 * 12 11 10 35 35 H 1.08002 * 120.06257 * 179.77004 * 13 12 11 36 36 H 0.97006 * 119.99671 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.16030 * 359.95415 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6126 1.9789 0.8471 5 8 1.6515 2.0851 -1.2158 6 6 1.4624 3.4962 -1.0927 7 6 3.5429 1.4440 0.1109 8 8 4.2151 1.9459 -0.7650 9 7 4.1400 0.8875 1.1834 10 6 5.5352 0.7940 1.2374 11 6 6.2656 0.6098 0.0657 12 6 7.6470 0.5209 0.1071 13 6 8.3132 0.6032 1.3092 14 6 7.5881 0.7839 2.5018 15 6 8.2653 0.8699 3.7402 16 1 9.2860 1.2214 3.7743 17 6 7.6131 0.4996 4.9216 18 7 6.4859 -0.1622 4.8666 19 14 8.3518 0.9502 6.5770 20 1 9.6211 1.6920 6.3673 21 1 7.3974 1.8040 7.3290 22 1 8.6244 -0.2876 7.3508 23 6 6.1860 0.8790 2.4541 24 1 -0.3633 0.4319 -0.9325 25 1 -0.3632 -1.0236 0.0923 26 1 -0.3633 0.5916 0.8404 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.2538 3.9219 -2.0743 30 1 2.3657 3.9496 -0.6846 31 1 0.6235 3.6935 -0.4254 32 1 3.6027 0.5519 1.9179 33 1 5.7516 0.5402 -0.8816 34 1 8.2042 0.3818 -0.8076 35 1 9.3903 0.5296 1.3369 36 1 6.0335 -0.4185 5.6855 37 1 5.6203 1.0181 3.3635 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456726162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:49 Heat of formation + Delta-G solvation = -70.475750 kcal Electronic energy + Delta-G solvation = -19607.613236 eV Core-core repulsion = 16542.476455 eV Total energy + Delta-G solvation = -3065.136780 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03063 -37.95964 -36.73266 -34.38186 -33.69290 -33.05148 -29.56984 -28.93127 -27.44355 -25.87946 -25.22768 -22.33984 -21.32776 -20.93587 -19.55079 -17.49757 -17.38217 -16.79047 -15.65316 -15.42856 -14.81855 -14.71846 -14.49766 -14.12797 -14.03314 -13.51346 -13.05383 -12.84473 -12.44439 -12.37031 -12.04057 -11.67003 -11.58677 -11.29535 -11.21277 -11.12418 -10.86580 -10.71147 -10.68077 -10.32306 -9.91959 -9.73761 -9.38097 -9.14316 -8.74311 -7.36261 -7.00494 -6.67241 -4.38878 2.52846 2.83234 3.06467 3.12191 3.18066 3.33282 3.45286 3.87907 3.93199 4.64719 4.76600 4.81762 5.00681 5.16398 5.27037 5.42029 5.44914 5.65036 5.68225 5.69843 5.83350 5.97463 6.15294 6.27581 6.65145 6.68808 6.85435 6.99751 7.05710 7.08649 7.26492 7.61482 7.69037 7.93308 8.03579 8.15927 8.32527 8.56061 8.75111 8.89002 8.95428 10.20474 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.004900 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.494891 B = 5712.949077 C = 6291.052631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.075 3.925 4 H 0.084 0.916 5 O -0.358 6.358 6 C 0.030 3.970 7 C 0.480 3.520 8 O -0.512 6.512 9 N -0.662 5.662 10 C 0.143 3.857 11 C -0.226 4.226 12 C -0.088 4.088 13 C -0.226 4.226 14 C 0.119 3.881 15 C -0.462 4.462 16 H 0.078 0.922 17 C 0.075 3.925 18 N -0.805 5.805 19 Si 0.909 3.091 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.275 1.275 23 C -0.180 4.180 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.039 0.961 32 H 0.401 0.599 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.277 0.723 37 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.605 1.476 -2.994 12.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.014 3.986 4 H 0.102 0.898 5 O -0.275 6.275 6 C -0.066 4.066 7 C 0.266 3.734 8 O -0.387 6.387 9 N -0.308 5.308 10 C 0.052 3.948 11 C -0.247 4.247 12 C -0.107 4.107 13 C -0.246 4.246 14 C 0.116 3.884 15 C -0.493 4.493 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.432 5.432 19 Si 0.734 3.266 20 H -0.185 1.185 21 H -0.199 1.199 22 H -0.200 1.200 23 C -0.202 4.202 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.101 0.899 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.236 0.764 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.371 1.636 -3.686 12.065 hybrid contribution 0.096 0.158 1.452 1.463 sum -11.275 1.794 -2.234 11.633 Atomic orbital electron populations 1.21716 0.94572 1.01840 1.02309 1.21601 0.97051 0.92999 1.03894 1.22119 0.91124 0.96191 0.89216 0.89783 1.87951 1.87905 1.20534 1.31068 1.22826 0.99749 0.81484 1.02561 1.21339 0.90815 0.78706 0.82548 1.90702 1.65409 1.43364 1.39199 1.43555 1.06830 1.59569 1.20798 1.17648 0.80314 1.01732 0.95143 1.20363 0.93722 1.14347 0.96218 1.20433 0.93600 1.00189 0.96429 1.21067 0.98092 1.12497 0.92946 1.17378 0.91101 0.87630 0.92310 1.19576 0.99971 1.39128 0.90597 0.90390 1.25862 0.94438 0.92521 1.01293 1.69807 1.15308 1.27958 1.30080 0.86251 0.80178 0.79078 0.81134 1.18473 1.19859 1.20038 1.21124 0.95286 1.08996 0.94762 0.91926 0.92291 0.92789 0.90327 0.89875 0.89477 0.93434 0.94214 0.76409 0.87906 0.89014 0.88838 0.91185 0.85719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.75 37.16 0.36 -0.99 16 2 C -0.12 -1.35 5.59 -26.73 -0.15 -1.50 16 3 C 0.08 1.03 2.52 -27.88 -0.07 0.96 16 4 H 0.08 0.95 7.83 -51.93 -0.41 0.54 16 5 O -0.36 -5.23 9.50 -55.14 -0.52 -5.75 16 6 C 0.03 0.36 10.74 101.05 1.08 1.44 16 7 C 0.48 8.86 6.89 -10.99 -0.08 8.79 16 8 O -0.51 -11.56 14.07 -14.35 -0.20 -11.76 16 9 N -0.66 -12.57 5.16 -9.91 -0.05 -12.62 16 10 C 0.14 3.39 6.28 -83.76 -0.53 2.87 16 11 C -0.23 -5.49 8.67 -39.10 -0.34 -5.83 16 12 C -0.09 -2.09 10.01 -39.69 -0.40 -2.49 16 13 C -0.23 -5.68 9.79 -38.84 -0.38 -6.06 16 14 C 0.12 3.17 5.57 -106.85 -0.59 2.58 16 15 C -0.46 -12.21 9.06 -37.74 -0.34 -12.55 16 16 H 0.08 1.99 7.88 -52.48 -0.41 1.58 16 17 C 0.07 1.85 5.22 -17.34 -0.09 1.76 16 18 N -0.80 -20.14 10.82 55.55 0.60 -19.54 16 19 Si 0.91 18.46 29.58 -169.99 -5.03 13.44 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 23 C -0.18 -4.60 8.58 -38.69 -0.33 -4.93 16 24 H 0.06 0.60 7.95 -51.93 -0.41 0.19 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.87 7.56 -51.93 -0.39 0.48 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.40 6.35 8.34 -40.82 -0.34 6.01 16 33 H 0.10 2.51 6.33 -52.49 -0.33 2.17 16 34 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 35 H 0.09 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 37 H 0.13 3.20 6.13 -52.49 -0.32 2.88 16 LS Contribution 314.37 15.07 4.74 4.74 Total: -1.00 -30.70 314.37 -7.45 -38.15 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.13 Total: 9.32 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.85 Total: -15.96 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.55 Total: -32.17 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.73 Total: -17.52 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.70 -7.45 -38.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.322 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds