Wall clock time and date at job start Sun Mar 29 2020 23:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46884 * 2 1 4 4 H 1.08995 * 109.46879 * 55.52451 * 3 2 1 5 5 O 1.42898 * 109.47299 * 295.52189 * 3 2 1 6 6 C 1.42901 * 114.00187 * 150.72799 * 5 3 2 7 7 C 1.50696 * 109.47061 * 175.52442 * 3 2 1 8 8 O 1.21279 * 120.00303 * 120.00037 * 7 3 2 9 9 N 1.34781 * 119.99624 * 300.00045 * 7 3 2 10 10 C 1.39944 * 119.99685 * 174.95042 * 9 7 3 11 11 C 1.39291 * 119.94598 * 327.38140 * 10 9 7 12 12 C 1.38489 * 120.42192 * 179.76349 * 11 10 9 13 13 C 1.37677 * 120.32677 * 0.51056 * 12 11 10 14 14 C 1.40744 * 119.88345 * 359.74616 * 13 12 11 15 15 C 1.41412 * 120.21054 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99716 * 26.46930 * 15 14 13 17 17 C 1.39927 * 120.00296 * 206.46673 * 15 14 13 18 18 N 1.30834 * 119.99564 * 13.19831 * 17 15 14 19 19 Si 1.86791 * 120.00345 * 193.20157 * 17 15 14 20 20 H 1.48502 * 109.47349 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47340 * 120.00015 * 19 17 15 22 22 H 1.48503 * 109.47075 * 240.00072 * 19 17 15 23 23 C 1.38244 * 119.94543 * 147.65402 * 10 9 7 24 24 H 1.08996 * 109.47186 * 65.14886 * 1 2 3 25 25 H 1.09005 * 109.46503 * 185.15100 * 1 2 3 26 26 H 1.09002 * 109.46901 * 305.14385 * 1 2 3 27 27 H 1.08999 * 109.46991 * 240.00141 * 2 1 3 28 28 H 1.08995 * 109.47171 * 120.00455 * 2 1 3 29 29 H 1.09001 * 109.47581 * 175.13155 * 6 5 3 30 30 H 1.08999 * 109.46803 * 55.12721 * 6 5 3 31 31 H 1.09002 * 109.46975 * 295.13339 * 6 5 3 32 32 H 0.96996 * 120.00483 * 354.94799 * 9 7 3 33 33 H 1.07996 * 119.78944 * 0.02562 * 11 10 9 34 34 H 1.08006 * 119.83487 * 180.23127 * 12 11 10 35 35 H 1.08002 * 120.06257 * 179.77004 * 13 12 11 36 36 H 0.97006 * 119.99671 * 180.02562 * 18 17 15 37 37 H 1.08001 * 120.16030 * 359.95415 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6126 1.9789 0.8471 5 8 1.6515 2.0851 -1.2158 6 6 1.4624 3.4962 -1.0927 7 6 3.5429 1.4440 0.1109 8 8 4.2151 1.9459 -0.7650 9 7 4.1400 0.8875 1.1834 10 6 5.5352 0.7940 1.2374 11 6 6.2656 0.6098 0.0657 12 6 7.6470 0.5209 0.1071 13 6 8.3132 0.6032 1.3092 14 6 7.5881 0.7839 2.5018 15 6 8.2653 0.8699 3.7402 16 1 9.2860 1.2214 3.7743 17 6 7.6131 0.4996 4.9216 18 7 6.4859 -0.1622 4.8666 19 14 8.3518 0.9502 6.5770 20 1 9.6211 1.6920 6.3673 21 1 7.3974 1.8040 7.3290 22 1 8.6244 -0.2876 7.3508 23 6 6.1860 0.8790 2.4541 24 1 -0.3633 0.4319 -0.9325 25 1 -0.3632 -1.0236 0.0923 26 1 -0.3633 0.5916 0.8404 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.2538 3.9219 -2.0743 30 1 2.3657 3.9496 -0.6846 31 1 0.6235 3.6935 -0.4254 32 1 3.6027 0.5519 1.9179 33 1 5.7516 0.5402 -0.8816 34 1 8.2042 0.3818 -0.8076 35 1 9.3903 0.5296 1.3369 36 1 6.0335 -0.4185 5.6855 37 1 5.6203 1.0181 3.3635 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456726162.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:48 Heat of formation + Delta-G solvation = -88.661403 kcal Electronic energy + Delta-G solvation = -19608.401825 eV Core-core repulsion = 16542.476455 eV Total energy + Delta-G solvation = -3065.925370 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.51383 -39.47730 -38.26308 -36.04099 -35.25937 -34.35040 -31.48511 -30.55071 -28.58819 -27.23031 -26.90023 -23.53189 -23.10486 -22.47873 -21.17088 -19.28146 -18.81300 -18.04711 -17.29757 -16.85729 -16.48081 -16.27246 -15.93039 -15.62581 -15.01552 -14.81714 -14.66394 -14.36574 -14.18235 -13.56205 -13.39807 -13.13405 -12.96223 -12.80236 -12.63909 -12.48957 -12.33411 -12.07273 -11.85156 -11.75421 -11.60053 -11.47302 -11.17072 -10.91438 -10.23914 -9.32679 -8.86006 -8.52994 -6.37364 0.77332 1.02440 1.41371 1.48168 1.55403 1.70669 2.09013 2.23460 2.75412 2.78051 3.59453 3.69971 3.84875 3.90156 4.33863 4.41958 4.44563 4.50451 4.56580 4.70826 4.80298 4.83113 4.85374 5.08271 5.10883 5.14788 5.16153 5.19353 5.35752 5.42339 5.76358 5.81844 5.98099 6.02802 6.08575 6.33052 6.56774 6.72189 6.93832 6.96634 7.23501 8.36421 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.024268 B = 0.004900 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.494891 B = 5712.949077 C = 6291.052631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.085 3.915 4 H 0.117 0.883 5 O -0.375 6.375 6 C 0.025 3.975 7 C 0.477 3.523 8 O -0.557 6.557 9 N -0.655 5.655 10 C 0.149 3.851 11 C -0.242 4.242 12 C -0.086 4.086 13 C -0.247 4.247 14 C 0.091 3.909 15 C -0.497 4.497 16 H 0.075 0.925 17 C 0.037 3.963 18 N -0.825 5.825 19 Si 0.983 3.017 20 H -0.262 1.262 21 H -0.263 1.263 22 H -0.266 1.266 23 C -0.199 4.199 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.026 0.974 31 H 0.071 0.929 32 H 0.417 0.583 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.102 0.898 36 H 0.289 0.711 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.193 1.514 -1.809 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.023 3.977 4 H 0.135 0.865 5 O -0.293 6.293 6 C -0.071 4.071 7 C 0.266 3.734 8 O -0.435 6.435 9 N -0.302 5.302 10 C 0.056 3.944 11 C -0.263 4.263 12 C -0.105 4.105 13 C -0.267 4.267 14 C 0.089 3.911 15 C -0.527 4.527 16 H 0.093 0.907 17 C -0.177 4.177 18 N -0.452 5.452 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.221 4.221 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.045 0.955 31 H 0.089 0.911 32 H 0.255 0.745 33 H 0.118 0.882 34 H 0.136 0.864 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.002 1.661 -2.506 13.345 hybrid contribution 0.551 0.145 1.021 1.169 sum -12.452 1.806 -1.485 12.669 Atomic orbital electron populations 1.21680 0.92338 1.03029 1.02739 1.21653 0.98879 0.91218 1.03636 1.22244 0.87152 0.98069 0.90232 0.86550 1.87943 1.87528 1.21960 1.31837 1.23013 0.99892 0.80060 1.04167 1.22395 0.92949 0.76952 0.81140 1.90674 1.66982 1.45191 1.40625 1.43531 1.05205 1.59601 1.21855 1.17710 0.82534 0.99859 0.94287 1.20509 0.94188 1.15267 0.96361 1.20729 0.93756 0.98894 0.97122 1.21235 0.98648 1.13656 0.93139 1.17789 0.92077 0.88081 0.93199 1.19822 1.00361 1.40795 0.91709 0.90695 1.26683 0.94777 0.91731 1.04523 1.69834 1.16024 1.27505 1.31790 0.85139 0.79270 0.79020 0.76151 1.18604 1.18757 1.19035 1.21083 0.95120 1.10758 0.95160 0.92430 0.90984 0.91190 0.91991 0.88830 0.88113 0.95546 0.91082 0.74548 0.88178 0.86427 0.88024 0.90055 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.75 71.98 0.70 -1.47 16 2 C -0.12 -2.44 5.59 30.60 0.17 -2.27 16 3 C 0.08 2.16 2.52 29.85 0.08 2.24 16 4 H 0.12 2.25 7.83 -2.39 -0.02 2.23 16 5 O -0.38 -10.41 9.50 -129.94 -1.23 -11.65 16 6 C 0.02 0.54 10.74 113.37 1.22 1.76 16 7 C 0.48 17.42 6.89 87.66 0.60 18.03 16 8 O -0.56 -25.48 14.07 16.01 0.23 -25.25 16 9 N -0.66 -24.68 5.16 -303.65 -1.57 -26.25 16 10 C 0.15 7.16 6.28 38.10 0.24 7.40 16 11 C -0.24 -11.97 8.67 22.58 0.20 -11.78 16 12 C -0.09 -4.16 10.01 22.20 0.22 -3.94 16 13 C -0.25 -12.68 9.79 22.75 0.22 -12.45 16 14 C 0.09 5.01 5.57 -21.31 -0.12 4.89 16 15 C -0.50 -26.72 9.06 23.46 0.21 -26.51 16 16 H 0.07 3.92 7.88 -2.91 -0.02 3.90 16 17 C 0.04 1.83 5.22 85.25 0.45 2.28 16 18 N -0.83 -41.08 10.82 21.82 0.24 -40.84 16 19 Si 0.98 37.25 29.58 68.60 2.03 39.28 16 20 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 21 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 22 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 23 C -0.20 -10.39 8.58 22.85 0.20 -10.20 16 24 H 0.06 0.96 7.95 -2.39 -0.02 0.94 16 25 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.75 7.56 -2.39 -0.02 1.74 16 29 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.03 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.42 12.79 8.34 -92.71 -0.77 12.02 16 33 H 0.10 4.97 6.33 -2.91 -0.02 4.95 16 34 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 36 H 0.29 12.80 8.30 -92.70 -0.77 12.03 16 37 H 0.12 6.22 6.13 -2.91 -0.02 6.20 16 Total: -1.00 -67.37 314.37 4.37 -62.99 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: 0.30 Total: 33.74 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 4.38 Total: -32.02 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -1.33 Total: -67.09 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -1.01 Total: -36.90 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Total: -67.37 4.37 -62.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456726162.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.671 kcal (2) G-P(sol) polarization free energy of solvation -67.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds