Wall clock time and date at job start Mon Mar 30 2020 00:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47174 * 96.33264 * 3 2 1 5 5 C 1.37095 * 120.00050 * 96.72045 * 4 3 2 6 6 H 1.08002 * 119.99592 * 162.71683 * 5 4 3 7 7 C 1.38949 * 120.00172 * 342.99001 * 5 4 3 8 8 N 1.31407 * 120.00039 * 357.72812 * 7 5 4 9 9 Si 1.86796 * 120.00062 * 177.72401 * 7 5 4 10 10 H 1.48506 * 109.47081 * 60.00435 * 9 7 5 11 11 H 1.48501 * 109.47410 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47578 * 300.00334 * 9 7 5 13 13 C 1.34771 * 119.99493 * 276.71749 * 4 3 2 14 14 O 1.21287 * 120.00402 * 356.22040 * 13 4 3 15 15 C 1.50705 * 119.99850 * 176.21865 * 13 4 3 16 16 H 1.09003 * 109.41236 * 46.59188 * 15 13 4 17 17 C 1.52961 * 109.41307 * 286.73782 * 15 13 4 18 18 C 1.53238 * 109.39843 * 176.22580 * 17 15 13 19 19 C 1.51271 * 108.48496 * 54.73266 * 18 17 15 20 20 O 1.20762 * 120.85104 * 128.59131 * 19 18 17 21 21 C 1.51265 * 118.29815 * 308.60853 * 19 18 17 22 22 H 1.08997 * 109.62426 * 171.06270 * 21 19 18 23 23 C 1.53000 * 109.63000 * 291.63582 * 21 19 18 24 24 C 1.52960 * 109.41505 * 166.45355 * 15 13 4 25 25 H 4.40638 * 5.51423 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.47733 * 336.32901 * 3 2 1 27 27 H 1.09010 * 109.46700 * 216.32907 * 3 2 1 28 28 H 0.96998 * 120.00233 * 180.02562 * 8 7 5 29 29 H 1.09002 * 109.47811 * 296.27374 * 17 15 13 30 30 H 1.08995 * 109.48132 * 56.31212 * 17 15 13 31 31 H 1.08999 * 109.68329 * 295.01425 * 18 17 15 32 32 H 1.08997 * 109.61532 * 174.41175 * 18 17 15 33 33 H 1.09003 * 109.47183 * 179.04811 * 23 21 19 34 34 H 1.09001 * 109.46904 * 299.04457 * 23 21 19 35 35 H 1.09001 * 109.46992 * 59.04653 * 23 21 19 36 36 H 1.09002 * 109.47679 * 303.68418 * 24 15 13 37 37 H 1.08999 * 109.48305 * 63.72620 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.1532 -1.3728 5 6 3.4932 1.3915 -1.8391 6 1 4.1035 1.4785 -2.7259 7 6 3.0766 2.5344 -1.1675 8 7 2.3017 2.4301 -0.1114 9 14 3.6182 4.2190 -1.7659 10 1 3.1421 4.4268 -3.1571 11 1 3.0432 5.2661 -0.8838 12 1 5.1005 4.3034 -1.7322 13 6 3.2306 -0.9238 -2.1773 14 8 2.9788 -2.0285 -1.7445 15 6 3.6514 -0.7555 -3.6146 16 1 4.5228 -0.1024 -3.6629 17 6 2.5038 -0.1315 -4.4105 18 6 2.9635 0.1264 -5.8493 19 6 3.4869 -1.1707 -6.4254 20 8 3.0882 -1.5815 -7.4887 21 6 4.5221 -1.9402 -5.6352 22 1 4.6812 -2.9163 -6.0935 23 6 5.8370 -1.1583 -5.6125 24 6 4.0064 -2.1216 -4.2037 25 1 -1.0500 -0.0002 0.0000 26 1 3.0099 -0.9403 0.4126 27 1 3.0089 0.8288 0.6089 28 1 2.0105 3.2279 0.3572 29 1 1.6529 -0.8127 -4.4161 30 1 2.2117 0.8116 -3.9486 31 1 3.7560 0.8748 -5.8530 32 1 2.1213 0.4782 -6.4451 33 1 6.5759 -1.7070 -5.0284 34 1 6.2015 -1.0308 -6.6318 35 1 5.6704 -0.1803 -5.1611 36 1 4.7801 -2.5899 -3.5952 37 1 3.1191 -2.7546 -4.2145 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490997844.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:32 Heat of formation + Delta-G solvation = -21.409617 kcal Electronic energy + Delta-G solvation = -20536.798525 eV Core-core repulsion = 17473.789412 eV Total energy + Delta-G solvation = -3063.009113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15782 -38.67366 -36.18553 -35.05593 -32.41655 -31.93474 -31.27580 -29.41745 -26.80812 -25.73268 -24.57362 -22.47395 -21.87552 -19.30767 -18.32385 -17.71099 -16.87633 -16.20371 -15.56025 -15.21057 -14.60941 -14.48391 -14.35414 -14.09106 -13.70684 -13.33611 -12.82141 -12.76425 -12.44592 -12.13787 -12.05833 -11.71985 -11.53016 -11.36004 -11.21005 -11.10698 -10.86451 -10.61831 -10.52364 -10.51324 -9.99339 -9.53291 -9.36023 -9.08254 -8.74373 -8.40586 -7.97959 -6.36766 -4.07003 2.11316 3.03556 3.12013 3.13892 3.64741 3.87537 4.05443 4.22440 4.24372 4.79100 4.85202 4.93445 5.03111 5.17392 5.32209 5.42493 5.56854 5.65965 5.69268 5.75460 5.78553 5.88604 6.02259 6.07078 6.18627 6.31763 6.38117 6.42075 6.69222 6.73192 6.78114 7.09273 7.21848 7.27992 7.63731 7.63859 8.27878 8.89865 8.96035 9.37748 9.77710 10.54975 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018605 B = 0.007581 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.603787 B = 3692.620377 C = 4441.649207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.095 4.095 3 C 0.224 3.776 4 N -0.439 5.439 5 C -0.331 4.331 6 H 0.101 0.899 7 C 0.035 3.965 8 N -0.867 5.867 9 Si 0.924 3.076 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.464 3.536 14 O -0.602 6.602 15 C -0.092 4.092 16 H 0.093 0.907 17 C -0.102 4.102 18 C -0.166 4.166 19 C 0.370 3.630 20 O -0.470 6.470 21 C -0.140 4.140 22 H 0.090 0.910 23 C -0.143 4.143 24 C -0.089 4.089 25 H 0.197 0.803 26 H 0.058 0.942 27 H 0.140 0.860 28 H 0.270 0.730 29 H 0.062 0.938 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 -0.614 -5.791 7.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.097 4.097 3 C 0.102 3.898 4 N -0.157 5.157 5 C -0.458 4.458 6 H 0.119 0.881 7 C -0.170 4.170 8 N -0.506 5.506 9 Si 0.750 3.250 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.198 1.198 13 C 0.253 3.747 14 O -0.488 6.488 15 C -0.113 4.113 16 H 0.111 0.889 17 C -0.140 4.140 18 C -0.204 4.204 19 C 0.247 3.753 20 O -0.344 6.344 21 C -0.159 4.159 22 H 0.109 0.891 23 C -0.200 4.200 24 C -0.127 4.127 25 H 0.215 0.785 26 H 0.076 0.924 27 H 0.157 0.843 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.989 -1.200 -5.968 7.278 hybrid contribution -0.117 1.141 -0.160 1.158 sum 3.872 -0.059 -6.128 7.249 Atomic orbital electron populations 1.24266 0.95426 1.07911 1.02952 1.23443 0.94556 0.94097 0.97555 1.18623 0.83786 1.01641 0.85768 1.43694 1.55354 1.06810 1.09810 1.19645 1.31488 0.81740 1.12931 0.88098 1.25317 0.95546 0.99956 0.96135 1.69936 1.32617 1.29726 1.18309 0.86042 0.78870 0.81278 0.78810 1.19737 1.20831 1.19809 1.20066 0.82798 0.84582 0.87254 1.90543 1.56359 1.25537 1.76340 1.21083 0.99624 0.97132 0.93492 0.88869 1.21423 0.97448 1.03381 0.91722 1.22319 1.02784 0.96724 0.98572 1.25032 0.79439 0.86773 0.84097 1.90357 1.53801 1.68365 1.21868 1.21971 0.95808 1.00199 0.97913 0.89133 1.21789 0.95252 1.01023 1.01933 1.21398 1.02056 0.97213 0.92033 0.78540 0.92449 0.84288 0.91827 0.91900 0.88394 0.88234 0.89563 0.91289 0.92668 0.91239 0.90510 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -6.41 19.25 29.55 0.57 -5.84 16 2 C -0.10 -2.31 12.05 -37.12 -0.45 -2.76 16 3 C 0.22 5.34 5.09 -6.83 -0.03 5.31 16 4 N -0.44 -10.33 2.61 -117.93 -0.31 -10.64 16 5 C -0.33 -7.51 7.90 -14.93 -0.12 -7.63 16 6 H 0.10 2.09 6.04 -52.49 -0.32 1.77 16 7 C 0.03 0.79 5.32 -17.47 -0.09 0.70 16 8 N -0.87 -21.10 8.74 55.50 0.48 -20.62 16 9 Si 0.92 18.03 29.55 -169.99 -5.02 13.01 16 10 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 11 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 12 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 13 C 0.46 10.45 6.79 -10.99 -0.07 10.38 16 14 O -0.60 -15.18 15.72 5.55 0.09 -15.09 16 15 C -0.09 -1.63 1.45 -91.81 -0.13 -1.76 16 16 H 0.09 1.53 5.07 -51.93 -0.26 1.26 16 17 C -0.10 -1.71 5.06 -26.63 -0.13 -1.84 16 18 C -0.17 -2.32 5.89 -27.48 -0.16 -2.48 16 19 C 0.37 5.54 6.06 -28.48 -0.17 5.37 16 20 O -0.47 -8.30 17.89 6.00 0.11 -8.19 16 21 C -0.14 -1.87 3.18 -91.37 -0.29 -2.16 16 22 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 23 C -0.14 -1.60 8.88 37.16 0.33 -1.27 16 24 C -0.09 -1.41 4.01 -26.63 -0.11 -1.52 16 25 H 0.20 3.58 7.80 -54.09 -0.42 3.16 16 26 H 0.06 1.34 7.58 -51.93 -0.39 0.95 16 27 H 0.14 3.39 5.65 -51.92 -0.29 3.10 16 28 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.10 1.80 6.80 -51.93 -0.35 1.45 16 31 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.77 5.97 -51.93 -0.31 0.46 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.23 8.06 -51.93 -0.42 0.81 16 LS Contribution 304.67 15.07 4.59 4.59 Total: -1.00 -28.44 304.67 -5.77 -34.21 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.85 Total: 8.24 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.87 Total: -5.50 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.18 Total: -31.26 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.19 Total: -23.29 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.02 Total: 13.01 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.44 -5.77 -34.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490997844.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.801 kcal (2) G-P(sol) polarization free energy of solvation -28.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds