Wall clock time and date at job start Mon Mar 30 2020 00:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47436 * 53.62962 * 3 2 1 5 5 C 1.37095 * 119.99886 * 264.13913 * 4 3 2 6 6 H 1.07998 * 119.99720 * 197.42694 * 5 4 3 7 7 C 1.38952 * 120.00142 * 17.43129 * 5 4 3 8 8 N 1.31410 * 120.00198 * 21.53069 * 7 5 4 9 9 Si 1.86797 * 119.99930 * 201.53423 * 7 5 4 10 10 H 1.48506 * 109.47147 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47147 * 119.99555 * 9 7 5 12 12 H 1.48494 * 109.47253 * 240.00154 * 9 7 5 13 13 C 1.34776 * 119.99913 * 84.13999 * 4 3 2 14 14 O 1.21293 * 119.99975 * 180.02562 * 13 4 3 15 15 C 1.50707 * 119.99997 * 359.97438 * 13 4 3 16 16 C 1.52991 * 109.47020 * 180.02562 * 15 13 4 17 17 C 1.53003 * 109.47335 * 180.02562 * 16 15 13 18 18 C 1.50701 * 109.47522 * 180.02562 * 17 16 15 19 19 O 1.20758 * 119.99826 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.99994 * 180.02562 * 18 17 16 21 21 C 1.53000 * 117.49858 * 223.74500 * 20 18 17 22 22 C 1.52998 * 117.50208 * 155.08826 * 20 18 17 23 23 H 4.40640 * 5.51443 * 180.02562 * 4 1 2 24 24 H 1.09005 * 109.47088 * 293.62505 * 3 2 1 25 25 H 1.09002 * 109.47114 * 173.63546 * 3 2 1 26 26 H 0.96997 * 119.99892 * 179.97438 * 8 7 5 27 27 H 1.09002 * 109.46538 * 60.00124 * 15 13 4 28 28 H 1.09001 * 109.47093 * 300.00486 * 15 13 4 29 29 H 1.09004 * 109.47240 * 60.00079 * 16 15 13 30 30 H 1.09001 * 109.47390 * 300.00066 * 16 15 13 31 31 H 1.08995 * 109.47316 * 59.99383 * 17 16 15 32 32 H 1.09001 * 109.46634 * 300.00159 * 17 16 15 33 33 H 1.09001 * 115.55416 * 9.40870 * 20 18 17 34 34 H 1.09001 * 117.49671 * 359.97438 * 21 20 18 35 35 H 1.08999 * 117.50153 * 145.01293 * 21 20 18 36 36 H 1.08999 * 117.49735 * 214.98003 * 22 20 18 37 37 H 1.09000 * 117.49349 * 359.96988 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1347 -0.8182 -1.1121 5 6 3.4781 -2.1283 -0.8996 6 1 4.0908 -2.6496 -1.6201 7 6 3.0379 -2.7854 0.2429 8 7 1.9863 -2.3400 0.8930 9 14 3.9409 -4.3018 0.8547 10 1 5.0829 -4.5957 -0.0480 11 1 4.4465 -4.0559 2.2292 12 1 3.0112 -5.4595 0.8688 13 6 3.2468 -0.2835 -2.3442 14 8 3.6510 -0.9616 -3.2651 15 6 2.8687 1.1565 -2.5780 16 6 3.0876 1.5086 -4.0506 17 6 2.7044 2.9708 -4.2879 18 6 2.9194 3.3175 -5.7386 19 8 3.3365 2.4815 -6.5038 20 6 2.6149 4.7076 -6.2342 21 6 1.8678 4.8360 -7.5632 22 6 3.3547 5.1901 -7.4835 23 1 -1.0499 0.0000 -0.0003 24 1 3.0095 -0.4110 0.9416 25 1 3.0088 1.0222 -0.1139 26 1 1.6788 -2.7989 1.6903 27 1 3.4884 1.8006 -1.9540 28 1 1.8194 1.3029 -2.3218 29 1 2.4677 0.8644 -4.6743 30 1 4.1368 1.3622 -4.3072 31 1 3.3245 3.6147 -3.6643 32 1 1.6553 3.1176 -4.0312 33 1 2.3978 5.4452 -5.4616 34 1 1.5968 3.9149 -8.0792 35 1 1.1594 5.6581 -7.6650 36 1 3.6241 6.2452 -7.5328 37 1 4.0621 4.5022 -7.9466 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491694633.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:24 Heat of formation + Delta-G solvation = 8.916282 kcal Electronic energy + Delta-G solvation = -19080.121262 eV Core-core repulsion = 16018.427178 eV Total energy + Delta-G solvation = -3061.694084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.94019 -38.62663 -36.30038 -35.25660 -33.78461 -32.06546 -31.17936 -28.91137 -26.43576 -25.29623 -23.89531 -22.69932 -21.29838 -19.34331 -18.77681 -17.84419 -16.77401 -16.53335 -16.05747 -15.62459 -15.20008 -14.70563 -14.39749 -14.32035 -13.93206 -13.40845 -12.90979 -12.48594 -12.38597 -12.19440 -11.86968 -11.80107 -11.49434 -11.39131 -11.02614 -10.89870 -10.87286 -10.72825 -10.46659 -10.36117 -10.24752 -9.54558 -9.34679 -9.24840 -8.87876 -8.34523 -7.82508 -6.30405 -3.82015 1.86794 3.15607 3.27593 3.34711 3.62305 3.69409 3.81901 3.95814 4.06383 4.21580 4.53517 4.66465 4.81706 4.92184 5.06457 5.10359 5.27995 5.33023 5.35801 5.49280 5.52005 5.69311 5.77554 5.83174 5.84341 5.87417 6.05461 6.14792 6.40510 6.57536 6.76540 6.79651 7.03781 7.57386 7.59852 8.10073 8.47053 8.81255 9.18427 9.40479 9.96779 10.70801 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.035524 B = 0.003855 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.012717 B = 7260.734755 C = 7819.382702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.111 4.111 3 C 0.232 3.768 4 N -0.444 5.444 5 C -0.314 4.314 6 H 0.104 0.896 7 C 0.030 3.970 8 N -0.864 5.864 9 Si 0.919 3.081 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 C 0.450 3.550 14 O -0.581 6.581 15 C -0.132 4.132 16 C -0.090 4.090 17 C -0.165 4.165 18 C 0.380 3.620 19 O -0.450 6.450 20 C -0.222 4.222 21 C -0.152 4.152 22 C -0.155 4.155 23 H 0.199 0.801 24 H 0.109 0.891 25 H 0.062 0.938 26 H 0.267 0.733 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 16.014 -5.599 17.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 C -0.113 4.113 3 C 0.109 3.891 4 N -0.163 5.163 5 C -0.441 4.441 6 H 0.121 0.879 7 C -0.174 4.174 8 N -0.503 5.503 9 Si 0.746 3.254 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.210 1.210 13 C 0.239 3.761 14 O -0.465 6.465 15 C -0.172 4.172 16 C -0.128 4.128 17 C -0.203 4.203 18 C 0.256 3.744 19 O -0.323 6.323 20 C -0.241 4.241 21 C -0.189 4.189 22 C -0.192 4.192 23 H 0.216 0.784 24 H 0.127 0.873 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.957 15.141 -6.284 16.421 hybrid contribution -0.203 -0.692 0.792 1.071 sum -1.160 14.449 -5.492 15.501 Atomic orbital electron populations 1.24265 0.95374 1.05528 1.03076 1.23223 0.94391 0.95826 0.97863 1.18251 0.84214 0.93046 0.93627 1.43739 1.56264 1.10760 1.05564 1.19712 1.30043 0.87345 1.07041 0.87853 1.25268 0.95224 0.99124 0.97757 1.70095 1.19845 1.41249 1.19066 0.85984 0.79773 0.81073 0.78608 1.19232 1.20649 1.20957 1.20125 0.84052 0.89178 0.82732 1.90534 1.50810 1.63429 1.41755 1.21575 1.02384 0.96038 0.97228 1.21086 1.03344 0.92768 0.95648 1.22113 1.04001 0.99719 0.94419 1.23863 0.72665 0.87090 0.90788 1.90415 1.33273 1.50131 1.58447 1.22936 1.08842 0.98852 0.93461 1.22938 0.95173 1.03916 0.96904 1.22955 0.95449 1.02180 0.98618 0.78432 0.87327 0.92002 0.92289 0.90543 0.90204 0.91003 0.90992 0.88463 0.88414 0.85762 0.88091 0.87894 0.88007 0.87836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.40 19.25 29.55 0.57 -4.83 16 2 C -0.11 -2.47 10.87 -37.12 -0.40 -2.87 16 3 C 0.23 5.08 4.91 -6.83 -0.03 5.04 16 4 N -0.44 -11.29 2.60 -117.93 -0.31 -11.60 16 5 C -0.31 -8.76 9.33 -14.93 -0.14 -8.90 16 6 H 0.10 3.06 7.38 -52.49 -0.39 2.67 16 7 C 0.03 0.79 4.87 -17.47 -0.08 0.70 16 8 N -0.86 -22.81 9.48 55.50 0.53 -22.28 16 9 Si 0.92 20.68 29.60 -169.99 -5.03 15.65 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.45 11.05 7.56 -10.98 -0.08 10.97 16 14 O -0.58 -16.52 15.63 5.55 0.09 -16.43 16 15 C -0.13 -2.38 4.31 -27.88 -0.12 -2.50 16 16 C -0.09 -1.54 3.79 -26.73 -0.10 -1.64 16 17 C -0.17 -1.96 5.64 -27.88 -0.16 -2.12 16 18 C 0.38 4.83 6.92 -29.04 -0.20 4.63 16 19 O -0.45 -7.53 16.05 6.00 0.10 -7.43 16 20 C -0.22 -2.05 6.12 -91.78 -0.56 -2.61 16 21 C -0.15 -1.29 10.14 -26.70 -0.27 -1.56 16 22 C -0.16 -1.33 10.05 -26.70 -0.27 -1.60 16 23 H 0.20 3.30 7.80 -54.10 -0.42 2.87 16 24 H 0.11 2.51 6.44 -51.93 -0.33 2.18 16 25 H 0.06 1.10 6.69 -51.93 -0.35 0.75 16 26 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.08 1.17 7.41 -51.93 -0.39 0.78 16 28 H 0.08 1.38 7.50 -51.93 -0.39 0.99 16 29 H 0.07 1.39 8.06 -51.93 -0.42 0.97 16 30 H 0.07 1.35 8.06 -51.93 -0.42 0.93 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 1.04 7.89 -51.93 -0.41 0.63 16 LS Contribution 322.84 15.07 4.87 4.87 Total: -1.00 -33.48 322.84 -6.80 -40.29 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.18 Total: 4.23 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -1.86 Total: -7.29 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.22 Total: -33.88 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: 0.18 Total: -23.86 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.48 -6.80 -40.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491694633.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.204 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds