Wall clock time and date at job start Sun Mar 29 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 H 1.09001 * 109.47064 * 305.40740 * 3 2 1 5 5 C 1.50699 * 109.46891 * 185.40854 * 3 2 1 6 6 H 1.07999 * 120.00202 * 275.01228 * 5 3 2 7 7 C 1.37876 * 120.00076 * 95.01471 * 5 3 2 8 8 N 1.31517 * 120.00226 * 184.64257 * 7 5 3 9 9 Si 1.86803 * 120.00078 * 4.64133 * 7 5 3 10 10 H 1.48506 * 109.47165 * 85.00623 * 9 7 5 11 11 H 1.48498 * 109.47147 * 205.00607 * 9 7 5 12 12 H 1.48504 * 109.47006 * 325.00647 * 9 7 5 13 13 N 1.46499 * 109.47235 * 65.40949 * 3 2 1 14 14 C 1.34774 * 119.99987 * 274.99496 * 13 3 2 15 15 O 1.21779 * 120.00030 * 0.02562 * 14 13 3 16 16 C 1.41546 * 120.00050 * 179.97438 * 14 13 3 17 17 C 1.35633 * 120.00166 * 188.01394 * 16 14 13 18 18 C 1.41600 * 119.99905 * 24.24955 * 17 16 14 19 19 C 1.37949 * 126.10181 * 188.98655 * 18 17 16 20 20 C 1.40315 * 106.52605 * 179.85240 * 19 18 17 21 21 C 1.35157 * 107.20834 * 0.41219 * 20 19 18 22 22 C 1.50699 * 125.48476 * 179.72053 * 21 20 19 23 23 O 1.34019 * 109.03081 * 359.74307 * 21 20 19 24 24 H 1.08999 * 109.47303 * 60.00291 * 1 2 3 25 25 H 1.09005 * 109.47130 * 299.99893 * 1 2 3 26 26 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46997 * 120.00374 * 2 1 3 28 28 H 1.09002 * 109.46755 * 239.99754 * 2 1 3 29 29 H 0.96998 * 120.00098 * 180.02562 * 8 7 5 30 30 H 0.97005 * 120.00228 * 94.99902 * 13 3 2 31 31 H 1.08000 * 120.00276 * 8.00854 * 16 14 13 32 32 H 1.07997 * 119.99688 * 204.25044 * 17 16 14 33 33 H 1.07995 * 126.73847 * 359.97438 * 19 18 17 34 34 H 1.08006 * 126.40008 * 180.15462 * 20 19 18 35 35 H 1.09001 * 109.46749 * 179.97438 * 22 21 20 36 36 H 1.08999 * 109.47517 * 300.00033 * 22 21 20 37 37 H 1.09003 * 109.47180 * 60.00094 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1616 1.3343 0.7431 7 6 4.1221 1.5872 -1.3761 8 7 5.4279 1.4977 -1.5055 9 14 3.0548 1.9075 -2.8754 10 1 2.7876 3.3638 -2.9907 11 1 3.7592 1.4354 -4.0944 12 1 1.7692 1.1781 -2.7327 13 7 1.6609 2.0945 1.2559 14 6 0.4444 2.6611 1.3806 15 8 -0.3398 2.6308 0.4494 16 6 0.0779 3.2906 2.5942 17 6 -1.1964 3.7165 2.7795 18 6 -2.2551 3.1194 2.0530 19 6 -3.5612 3.5612 2.0089 20 6 -4.2543 2.6747 1.1707 21 6 -3.3681 1.7435 0.7534 22 6 -3.6796 0.5876 -0.1620 23 8 -2.1678 2.0132 1.2852 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 5.8367 1.5984 -2.3793 30 1 2.2854 2.1184 1.9978 31 1 0.8129 3.4318 3.3728 32 1 -1.4036 4.5110 3.4810 33 1 -3.9696 4.4217 2.5178 34 1 -5.3015 2.7245 0.9110 35 1 -2.7756 0.0015 -0.3277 36 1 -4.4428 -0.0423 0.2949 37 1 -4.0455 0.9678 -1.1158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492584943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:24 Heat of formation + Delta-G solvation = -3.965785 kcal Electronic energy + Delta-G solvation = -20427.078384 eV Core-core repulsion = 17364.825692 eV Total energy + Delta-G solvation = -3062.252692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.20860 -39.19743 -35.43743 -33.69659 -32.89195 -32.30840 -31.47464 -30.83591 -27.66031 -26.36994 -23.36054 -22.35710 -21.53441 -20.58661 -19.53344 -19.06988 -17.59716 -16.41736 -15.88050 -15.67291 -15.31578 -14.52751 -14.21933 -13.97874 -13.72891 -13.10157 -12.92514 -12.82837 -12.70121 -12.56905 -12.26001 -11.98318 -11.81173 -11.76879 -11.60724 -10.92259 -10.62345 -10.57753 -10.02637 -9.90139 -9.80059 -9.49826 -9.16037 -8.99240 -8.66926 -7.90988 -7.46312 -6.20884 -4.23847 0.66726 2.41265 2.99046 3.25860 3.28269 3.35649 3.43689 4.05504 4.31359 4.35555 4.87250 5.01499 5.13723 5.16902 5.30407 5.48712 5.51404 5.62167 5.80292 5.87405 5.95348 6.11585 6.13599 6.21092 6.28313 6.32854 6.51759 6.71671 6.76436 6.84761 7.05470 7.12185 7.36169 7.44273 7.50643 7.66361 8.20875 8.66756 8.81014 9.13652 9.42441 10.91026 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.006250 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.704586 B = 4478.788625 C = 4942.892743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.123 4.123 3 C 0.238 3.762 4 H 0.050 0.950 5 C -0.530 4.530 6 H 0.078 0.922 7 C 0.081 3.919 8 N -0.891 5.891 9 Si 0.873 3.127 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.259 1.259 13 N -0.699 5.699 14 C 0.522 3.478 15 O -0.536 6.536 16 C -0.204 4.204 17 C -0.016 4.016 18 C 0.004 3.996 19 C -0.181 4.181 20 C -0.234 4.234 21 C 0.010 3.990 22 C -0.080 4.080 23 O -0.108 6.108 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.392 0.608 31 H 0.133 0.867 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.375 1.519 7.679 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C 0.135 3.865 4 H 0.068 0.932 5 C -0.568 4.568 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.527 5.527 9 Si 0.700 3.300 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.184 1.184 13 N -0.347 5.347 14 C 0.310 3.690 15 O -0.418 6.418 16 C -0.225 4.225 17 C -0.036 4.036 18 C -0.046 4.046 19 C -0.201 4.201 20 C -0.253 4.253 21 C -0.044 4.044 22 C -0.136 4.136 23 O -0.001 6.001 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.044 0.956 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.225 0.775 31 H 0.150 0.850 32 H 0.169 0.831 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.436 1.301 6.807 17.837 hybrid contribution -0.137 0.467 -0.431 0.650 sum -16.573 1.769 6.377 17.845 Atomic orbital electron populations 1.21954 0.97311 0.98419 1.02525 1.22048 0.93808 0.99449 1.00923 1.19105 0.95215 0.89030 0.83159 0.93222 1.21047 0.88845 1.51502 0.95389 0.90442 1.24933 0.94834 0.93745 0.98789 1.69887 1.09565 1.48674 1.24591 0.86905 0.81247 0.79567 0.82277 1.19979 1.21291 1.18362 1.46540 1.14961 1.55197 1.18020 1.17108 0.83165 0.79938 0.88748 1.90822 1.50360 1.59246 1.41329 1.22455 0.97708 1.04148 0.98213 1.20496 0.90441 0.95965 0.96689 1.19719 0.94695 0.91197 0.99001 1.22153 0.92942 1.01723 1.03241 1.21322 1.00604 0.98330 1.05062 1.22717 0.83727 0.99231 0.98718 1.20359 1.02965 0.93608 0.96681 1.84562 1.30249 1.37640 1.47644 0.93321 0.92171 0.95580 0.93216 0.92401 0.92317 0.77533 0.84953 0.83138 0.83641 0.83995 0.90128 0.90092 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.06 37.16 0.30 -2.62 16 2 C -0.12 -2.72 5.59 -26.73 -0.15 -2.87 16 3 C 0.24 5.70 1.89 -69.09 -0.13 5.57 16 4 H 0.05 1.31 4.73 -51.93 -0.25 1.07 16 5 C -0.53 -14.39 9.05 -34.44 -0.31 -14.70 16 6 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 7 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 8 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 9 Si 0.87 21.96 26.99 -169.99 -4.59 17.37 16 10 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.26 -6.42 6.82 56.52 0.39 -6.04 16 13 N -0.70 -14.34 5.01 -57.86 -0.29 -14.63 16 14 C 0.52 10.21 5.70 -15.00 -0.09 10.13 16 15 O -0.54 -11.97 9.94 -20.14 -0.20 -12.17 16 16 C -0.20 -3.05 9.79 -39.25 -0.38 -3.44 16 17 C -0.02 -0.21 9.85 -39.23 -0.39 -0.60 16 18 C 0.00 0.07 6.06 -38.41 -0.23 -0.16 16 19 C -0.18 -2.45 10.90 -38.91 -0.42 -2.87 16 20 C -0.23 -3.15 10.76 -39.90 -0.43 -3.58 16 21 C 0.01 0.15 7.30 -35.41 -0.26 -0.11 16 22 C -0.08 -0.94 10.41 36.01 0.37 -0.57 16 23 O -0.11 -1.92 5.81 -20.58 -0.12 -2.04 16 24 H 0.05 1.04 7.87 -51.93 -0.41 0.63 16 25 H 0.06 1.22 4.52 -51.93 -0.23 0.99 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 30 H 0.39 7.13 8.55 -40.82 -0.35 6.78 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 35 H 0.08 1.05 7.67 -51.93 -0.40 0.65 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -32.81 306.23 -7.04 -39.85 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.02 Total: 6.35 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.22 Total: -13.63 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.48 Total: -40.35 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.32 Total: -14.21 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.59 Total: 17.37 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.81 -7.04 -39.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492584943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.886 kcal (2) G-P(sol) polarization free energy of solvation -32.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds