Wall clock time and date at job start Sun Mar 29 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.46993 * 2 1 4 4 H 1.09001 * 109.47064 * 305.40740 * 3 2 1 5 5 C 1.50699 * 109.46891 * 185.40854 * 3 2 1 6 6 H 1.07999 * 120.00202 * 275.01228 * 5 3 2 7 7 C 1.37876 * 120.00076 * 95.01471 * 5 3 2 8 8 N 1.31517 * 120.00226 * 184.64257 * 7 5 3 9 9 Si 1.86803 * 120.00078 * 4.64133 * 7 5 3 10 10 H 1.48506 * 109.47165 * 85.00623 * 9 7 5 11 11 H 1.48498 * 109.47147 * 205.00607 * 9 7 5 12 12 H 1.48504 * 109.47006 * 325.00647 * 9 7 5 13 13 N 1.46499 * 109.47235 * 65.40949 * 3 2 1 14 14 C 1.34774 * 119.99987 * 274.99496 * 13 3 2 15 15 O 1.21779 * 120.00030 * 0.02562 * 14 13 3 16 16 C 1.41546 * 120.00050 * 179.97438 * 14 13 3 17 17 C 1.35633 * 120.00166 * 188.01394 * 16 14 13 18 18 C 1.41600 * 119.99905 * 24.24955 * 17 16 14 19 19 C 1.37949 * 126.10181 * 188.98655 * 18 17 16 20 20 C 1.40315 * 106.52605 * 179.85240 * 19 18 17 21 21 C 1.35157 * 107.20834 * 0.41219 * 20 19 18 22 22 C 1.50699 * 125.48476 * 179.72053 * 21 20 19 23 23 O 1.34019 * 109.03081 * 359.74307 * 21 20 19 24 24 H 1.08999 * 109.47303 * 60.00291 * 1 2 3 25 25 H 1.09005 * 109.47130 * 299.99893 * 1 2 3 26 26 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46997 * 120.00374 * 2 1 3 28 28 H 1.09002 * 109.46755 * 239.99754 * 2 1 3 29 29 H 0.96998 * 120.00098 * 180.02562 * 8 7 5 30 30 H 0.97005 * 120.00228 * 94.99902 * 13 3 2 31 31 H 1.08000 * 120.00276 * 8.00854 * 16 14 13 32 32 H 1.07997 * 119.99688 * 204.25044 * 17 16 14 33 33 H 1.07995 * 126.73847 * 359.97438 * 19 18 17 34 34 H 1.08006 * 126.40008 * 180.15462 * 20 19 18 35 35 H 1.09001 * 109.46749 * 179.97438 * 22 21 20 36 36 H 1.08999 * 109.47517 * 300.00033 * 22 21 20 37 37 H 1.09003 * 109.47180 * 60.00094 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5997 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1616 1.3343 0.7431 7 6 4.1221 1.5872 -1.3761 8 7 5.4279 1.4977 -1.5055 9 14 3.0548 1.9075 -2.8754 10 1 2.7876 3.3638 -2.9907 11 1 3.7592 1.4354 -4.0944 12 1 1.7692 1.1781 -2.7327 13 7 1.6609 2.0945 1.2559 14 6 0.4444 2.6611 1.3806 15 8 -0.3398 2.6308 0.4494 16 6 0.0779 3.2906 2.5942 17 6 -1.1964 3.7165 2.7795 18 6 -2.2551 3.1194 2.0530 19 6 -3.5612 3.5612 2.0089 20 6 -4.2543 2.6747 1.1707 21 6 -3.3681 1.7435 0.7534 22 6 -3.6796 0.5876 -0.1620 23 8 -2.1678 2.0132 1.2852 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 5.8367 1.5984 -2.3793 30 1 2.2854 2.1184 1.9978 31 1 0.8129 3.4318 3.3728 32 1 -1.4036 4.5110 3.4810 33 1 -3.9696 4.4217 2.5178 34 1 -5.3015 2.7245 0.9110 35 1 -2.7756 0.0015 -0.3277 36 1 -4.4428 -0.0423 0.2949 37 1 -4.0455 0.9678 -1.1158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492584943.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:54:24 Heat of formation + Delta-G solvation = -24.791514 kcal Electronic energy + Delta-G solvation = -20427.981456 eV Core-core repulsion = 17364.825692 eV Total energy + Delta-G solvation = -3063.155763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.29761 -40.71199 -37.12510 -34.93380 -34.36603 -33.95105 -33.09279 -31.92414 -29.49833 -27.55044 -25.00907 -23.86206 -22.59620 -21.91580 -21.24155 -20.40251 -19.21230 -18.07025 -17.40069 -16.92472 -16.77170 -16.02357 -15.85359 -15.25746 -15.05658 -14.79830 -14.31330 -13.91671 -13.86161 -13.81267 -13.72441 -13.56911 -13.42940 -13.08481 -12.93886 -12.71738 -12.48370 -12.26828 -11.87512 -11.66193 -11.19795 -11.09006 -10.84377 -10.59606 -10.46062 -9.57199 -8.58015 -8.40270 -6.45095 -0.43772 1.25785 1.29691 1.34262 1.41490 1.89689 2.25073 2.26687 2.65781 2.77220 3.09200 3.89317 4.01358 4.17067 4.24979 4.33703 4.44805 4.49699 4.58240 4.63774 4.68246 4.80974 4.86076 4.90184 4.94764 5.10823 5.16836 5.24726 5.29504 5.37365 5.43959 5.49209 5.62255 5.76110 5.87235 6.17882 6.44679 6.59948 7.05996 7.21567 7.65851 8.75111 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.026516 B = 0.006250 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.704586 B = 4478.788625 C = 4942.892743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.121 4.121 3 C 0.245 3.755 4 H 0.026 0.974 5 C -0.526 4.526 6 H 0.054 0.946 7 C 0.034 3.966 8 N -0.931 5.931 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.276 1.276 12 H -0.257 1.257 13 N -0.706 5.706 14 C 0.519 3.481 15 O -0.568 6.568 16 C -0.239 4.239 17 C 0.015 3.985 18 C -0.042 4.042 19 C -0.165 4.165 20 C -0.238 4.238 21 C -0.013 4.013 22 C -0.080 4.080 23 O -0.141 6.141 24 H 0.030 0.970 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.046 0.954 29 H 0.270 0.730 30 H 0.401 0.599 31 H 0.164 0.836 32 H 0.199 0.801 33 H 0.180 0.820 34 H 0.170 0.830 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.138 2.243 8.669 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.141 3.859 4 H 0.044 0.956 5 C -0.564 4.564 6 H 0.072 0.928 7 C -0.167 4.167 8 N -0.570 5.570 9 Si 0.752 3.248 10 H -0.203 1.203 11 H -0.202 1.202 12 H -0.181 1.181 13 N -0.355 5.355 14 C 0.311 3.689 15 O -0.451 6.451 16 C -0.260 4.260 17 C -0.005 4.005 18 C -0.092 4.092 19 C -0.184 4.184 20 C -0.257 4.257 21 C -0.066 4.066 22 C -0.136 4.136 23 O -0.035 6.035 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.236 0.764 31 H 0.181 0.819 32 H 0.216 0.784 33 H 0.197 0.803 34 H 0.188 0.812 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.208 2.031 7.826 20.840 hybrid contribution 0.545 0.256 -0.672 0.903 sum -18.663 2.287 7.153 20.117 Atomic orbital electron populations 1.21761 0.95453 0.99702 1.01583 1.21964 0.95327 0.98082 1.00677 1.18789 0.92826 0.90106 0.84187 0.95570 1.21268 0.90532 1.50160 0.94467 0.92770 1.25580 0.95704 0.94041 1.01339 1.69982 1.10975 1.50671 1.25380 0.86062 0.79907 0.79056 0.79822 1.20344 1.20176 1.18140 1.46309 1.16106 1.56034 1.17063 1.17750 0.82015 0.79007 0.90129 1.90802 1.50970 1.60463 1.42907 1.22370 0.99597 1.06291 0.97717 1.21158 0.89164 0.94749 0.95416 1.20407 0.96453 0.91881 1.00463 1.22654 0.91961 1.01887 1.01907 1.21750 1.01762 0.97639 1.04550 1.23451 0.83582 1.00514 0.99064 1.20494 1.02968 0.93035 0.97081 1.84523 1.31641 1.38759 1.48578 0.95090 0.92289 0.93057 0.92505 0.93549 0.92087 0.76431 0.81856 0.78391 0.80264 0.81244 0.91902 0.87287 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.11 8.06 71.98 0.58 -4.53 16 2 C -0.12 -5.39 5.59 30.59 0.17 -5.22 16 3 C 0.25 11.94 1.89 44.24 0.08 12.02 16 4 H 0.03 1.41 4.73 -2.39 -0.01 1.40 16 5 C -0.53 -29.27 9.05 25.60 0.23 -29.04 16 6 H 0.05 3.20 8.06 -2.91 -0.02 3.18 16 7 C 0.03 1.93 5.47 84.65 0.46 2.40 16 8 N -0.93 -56.63 13.96 21.45 0.30 -56.33 16 9 Si 0.93 46.14 26.99 68.60 1.85 48.00 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -12.60 6.82 99.48 0.68 -11.92 16 13 N -0.71 -29.15 5.01 -455.14 -2.28 -31.43 16 14 C 0.52 20.17 5.70 85.06 0.49 20.65 16 15 O -0.57 -25.41 9.94 19.55 0.19 -25.22 16 16 C -0.24 -6.73 9.79 22.48 0.22 -6.51 16 17 C 0.01 0.35 9.85 22.50 0.22 0.57 16 18 C -0.04 -1.24 6.06 23.03 0.14 -1.10 16 19 C -0.17 -3.89 10.90 22.71 0.25 -3.64 16 20 C -0.24 -5.72 10.76 22.07 0.24 -5.48 16 21 C -0.01 -0.37 7.30 24.98 0.18 -0.18 16 22 C -0.08 -1.76 10.41 71.24 0.74 -1.02 16 23 O -0.14 -4.88 5.81 17.98 0.10 -4.77 16 24 H 0.03 1.32 7.87 -2.39 -0.02 1.30 16 25 H 0.06 2.39 4.52 -2.38 -0.01 2.37 16 26 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 28 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 30 H 0.40 14.72 8.55 -92.70 -0.79 13.93 16 31 H 0.16 3.40 8.06 -2.91 -0.02 3.37 16 32 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 33 H 0.18 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 35 H 0.06 1.60 7.67 -2.39 -0.02 1.58 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -72.95 306.23 4.43 -68.52 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.26 Total: 22.31 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 4.00 Total: -21.08 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -1.98 Total: -87.76 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: 0.30 Total: -29.99 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.85 Total: 48.00 kcal Total: -72.95 4.43 -68.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492584943.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.731 kcal (2) G-P(sol) polarization free energy of solvation -72.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds