Wall clock time and date at job start Mon Mar 30 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99836 * 2 1 4 4 O 1.20821 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99911 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46671 * 59.99912 * 5 3 2 7 7 C 1.52997 * 109.47322 * 300.00056 * 5 3 2 8 8 C 1.50693 * 109.47084 * 179.97438 * 5 3 2 9 9 C 1.38304 * 119.96351 * 59.97866 * 8 5 3 10 10 C 1.38264 * 120.15229 * 179.97438 * 9 8 5 11 11 C 1.38126 * 120.07438 * 0.02562 * 10 9 8 12 12 C 1.38892 * 119.92321 * 359.77350 * 11 10 9 13 13 N 1.39669 * 120.07122 * 180.22911 * 12 11 10 14 14 C 1.46502 * 120.00696 * 0.22927 * 13 12 11 15 15 C 1.50691 * 109.47446 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00355 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00100 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00084 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99737 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47156 * 90.00003 * 19 17 15 21 21 H 1.48504 * 109.47408 * 209.99809 * 19 17 15 22 22 H 1.48498 * 109.47564 * 329.99809 * 19 17 15 23 23 C 1.38088 * 119.96462 * 240.00464 * 8 5 3 24 24 H 1.09007 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47310 * 300.00343 * 1 2 3 26 26 H 1.09001 * 109.47216 * 60.00460 * 1 2 3 27 27 H 1.08997 * 109.46963 * 59.99747 * 7 5 3 28 28 H 1.08991 * 109.47106 * 179.97438 * 7 5 3 29 29 H 1.09005 * 109.46671 * 299.99849 * 7 5 3 30 30 H 1.07999 * 119.92642 * 359.97438 * 9 8 5 31 31 H 1.08006 * 119.96209 * 180.02562 * 10 9 8 32 32 H 1.07997 * 120.03683 * 179.97438 * 11 10 9 33 33 H 0.97008 * 120.00077 * 180.22641 * 13 12 11 34 34 H 1.08994 * 109.46729 * 300.00182 * 14 13 12 35 35 H 1.09005 * 109.46603 * 59.99469 * 14 13 12 36 36 H 0.97001 * 119.99707 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.03354 * 359.97042 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 3.9936 2.7200 -0.0002 9 6 3.6141 3.5530 1.0366 10 6 4.0043 4.8795 1.0401 11 6 4.7745 5.3771 0.0071 12 6 5.1609 4.5422 -1.0335 13 7 5.9437 5.0410 -2.0771 14 6 6.3625 6.4449 -2.0726 15 6 7.1916 6.7258 -3.2991 16 1 7.3868 5.9377 -4.0112 17 6 7.7002 7.9895 -3.5129 18 7 8.4233 8.2347 -4.5837 19 14 7.3620 9.3529 -2.2818 20 1 8.4318 9.3666 -1.2520 21 1 7.3358 10.6603 -2.9857 22 1 6.0494 9.1161 -1.6288 23 6 4.7631 3.2112 -1.0362 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.8039 -0.4636 1.2502 28 1 5.2014 0.6383 1.2503 29 1 3.7228 1.0760 2.1399 30 1 3.0115 3.1666 1.8453 31 1 3.7066 5.5272 1.8515 32 1 5.0787 6.4134 0.0103 33 1 6.2102 4.4578 -2.8051 34 1 5.4815 7.0867 -2.0742 35 1 6.9555 6.6442 -1.1800 36 1 8.7814 9.1236 -4.7338 37 1 5.0591 2.5601 -1.8455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584109008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:13 Heat of formation + Delta-G solvation = -66.318820 kcal Electronic energy + Delta-G solvation = -19107.574020 eV Core-core repulsion = 16042.617498 eV Total energy + Delta-G solvation = -3064.956522 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75241 -39.00349 -36.66901 -35.51354 -33.75119 -32.48784 -30.15655 -28.96232 -27.85473 -26.65544 -24.81401 -22.73344 -21.95473 -21.29218 -19.52662 -17.69074 -17.45161 -16.69522 -16.49304 -15.97330 -15.46136 -15.11237 -14.32499 -13.99264 -13.86632 -13.54164 -13.41323 -13.09457 -13.03930 -12.71530 -12.42265 -12.27780 -12.14007 -11.82741 -11.62447 -11.18945 -10.93585 -10.87248 -10.75949 -10.54161 -10.31044 -10.00026 -9.49357 -9.43866 -8.71838 -8.43230 -6.68330 -6.23593 -4.25438 1.70045 2.11299 2.16262 2.69653 3.21118 3.28560 3.31242 4.26540 4.29308 4.33112 4.52924 4.77003 4.90555 4.96042 5.01074 5.06755 5.10937 5.31476 5.37294 5.55058 5.60000 5.65216 5.83118 5.94639 6.01021 6.22893 6.25458 6.37485 6.64309 6.82224 6.91344 6.99900 7.03523 7.29693 7.40616 7.69550 7.95198 8.39553 8.58978 8.80066 9.35863 10.88907 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037985 B = 0.003754 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.954333 B = 7456.917958 C = 7625.121928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.490 6.490 5 C -0.037 4.037 6 H 0.113 0.887 7 C -0.139 4.139 8 C -0.037 4.037 9 C -0.166 4.166 10 C -0.071 4.071 11 C -0.200 4.200 12 C 0.230 3.770 13 N -0.723 5.723 14 C 0.223 3.777 15 C -0.541 4.541 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.893 5.893 19 Si 0.879 3.121 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.263 1.263 23 C -0.198 4.198 24 H 0.099 0.901 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.120 0.880 33 H 0.396 0.604 34 H 0.018 0.982 35 H 0.013 0.987 36 H 0.268 0.732 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.827 -15.779 11.827 22.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.303 3.697 4 O -0.375 6.375 5 C -0.056 4.056 6 H 0.131 0.869 7 C -0.196 4.196 8 C -0.038 4.038 9 C -0.187 4.187 10 C -0.090 4.090 11 C -0.223 4.223 12 C 0.122 3.878 13 N -0.347 5.347 14 C 0.100 3.900 15 C -0.578 4.578 16 H 0.096 0.904 17 C -0.128 4.128 18 N -0.530 5.530 19 Si 0.705 3.295 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.222 4.222 24 H 0.117 0.883 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.138 0.862 33 H 0.231 0.769 34 H 0.035 0.965 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.874 -15.078 11.697 22.475 hybrid contribution -0.223 0.733 0.126 0.777 sum -12.097 -14.345 11.823 22.179 Atomic orbital electron populations 1.23235 0.76660 1.03427 1.02559 1.86499 1.23162 1.33752 1.84482 1.23788 0.91999 0.81271 0.72608 1.90711 1.66837 1.36149 1.43788 1.19927 0.87067 0.95948 1.02670 0.86893 1.21775 1.02324 1.00141 0.95360 1.18791 0.97688 0.92216 0.95080 1.20370 1.04595 0.94070 0.99619 1.20742 0.96140 0.94917 0.97209 1.20714 1.05454 1.00051 0.96080 1.17933 0.89560 0.91808 0.88515 1.45164 1.54013 1.12715 1.22769 1.19478 0.94605 0.78281 0.97588 1.21069 1.32516 0.97780 1.06483 0.90364 1.24827 0.94197 0.98375 0.95394 1.69884 1.34180 1.22309 1.26625 0.86799 0.79614 0.81528 0.81541 1.19837 1.20844 1.18760 1.20298 1.06689 0.94518 1.00673 0.88270 0.92015 0.91942 0.91267 0.90583 0.91854 0.87605 0.86785 0.86235 0.76933 0.96462 0.96891 0.92253 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.89 10.47 -39.25 -0.41 -4.30 16 3 C 0.46 5.92 7.12 36.01 0.26 6.18 16 4 O -0.49 -7.86 14.85 -18.75 -0.28 -8.13 16 5 C -0.04 -0.43 3.00 -92.93 -0.28 -0.70 16 6 H 0.11 1.11 7.87 -51.93 -0.41 0.70 16 7 C -0.14 -1.25 8.94 37.16 0.33 -0.92 16 8 C -0.04 -0.54 4.40 -104.66 -0.46 -1.00 16 9 C -0.17 -2.52 7.93 -39.55 -0.31 -2.84 16 10 C -0.07 -1.14 10.04 -39.61 -0.40 -1.54 16 11 C -0.20 -3.67 9.31 -39.38 -0.37 -4.03 16 12 C 0.23 4.35 6.65 -83.79 -0.56 3.79 16 13 N -0.72 -15.03 5.72 -59.81 -0.34 -15.38 16 14 C 0.22 5.33 3.73 -5.20 -0.02 5.31 16 15 C -0.54 -14.93 9.83 -34.44 -0.34 -15.27 16 16 H 0.08 2.30 7.84 -52.49 -0.41 1.88 16 17 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 19 Si 0.88 20.93 27.47 -169.99 -4.67 16.26 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.26 -6.04 6.54 56.52 0.37 -5.67 16 23 C -0.20 -3.23 9.52 -39.38 -0.37 -3.60 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.58 7.39 -51.93 -0.38 0.20 16 30 H 0.11 1.46 7.51 -52.49 -0.39 1.07 16 31 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.12 2.25 6.73 -52.49 -0.35 1.89 16 33 H 0.40 7.82 8.33 -40.82 -0.34 7.48 16 34 H 0.02 0.43 7.00 -51.93 -0.36 0.07 16 35 H 0.01 0.32 7.39 -51.93 -0.38 -0.07 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.12 1.66 7.94 -52.49 -0.42 1.24 16 LS Contribution 314.76 15.07 4.74 4.74 Total: -1.00 -31.67 314.76 -6.89 -38.56 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.16 Total: 5.35 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.55 Total: -11.24 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.43 Total: -41.23 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: -0.69 Total: -12.43 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.67 -6.89 -38.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584109008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.763 kcal (2) G-P(sol) polarization free energy of solvation -31.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds