Wall clock time and date at job start Mon Mar 30 2020 00:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 116.99836 * 2 1 4 4 O 1.20821 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99911 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.46671 * 59.99912 * 5 3 2 7 7 C 1.52997 * 109.47322 * 300.00056 * 5 3 2 8 8 C 1.50693 * 109.47084 * 179.97438 * 5 3 2 9 9 C 1.38304 * 119.96351 * 59.97866 * 8 5 3 10 10 C 1.38264 * 120.15229 * 179.97438 * 9 8 5 11 11 C 1.38126 * 120.07438 * 0.02562 * 10 9 8 12 12 C 1.38892 * 119.92321 * 359.77350 * 11 10 9 13 13 N 1.39669 * 120.07122 * 180.22911 * 12 11 10 14 14 C 1.46502 * 120.00696 * 0.22927 * 13 12 11 15 15 C 1.50691 * 109.47446 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00355 * 0.02562 * 15 14 13 17 17 C 1.37881 * 120.00100 * 179.97438 * 15 14 13 18 18 N 1.31515 * 120.00084 * 180.02562 * 17 15 14 19 19 Si 1.86797 * 119.99737 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47156 * 90.00003 * 19 17 15 21 21 H 1.48504 * 109.47408 * 209.99809 * 19 17 15 22 22 H 1.48498 * 109.47564 * 329.99809 * 19 17 15 23 23 C 1.38088 * 119.96462 * 240.00464 * 8 5 3 24 24 H 1.09007 * 109.46922 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47310 * 300.00343 * 1 2 3 26 26 H 1.09001 * 109.47216 * 60.00460 * 1 2 3 27 27 H 1.08997 * 109.46963 * 59.99747 * 7 5 3 28 28 H 1.08991 * 109.47106 * 179.97438 * 7 5 3 29 29 H 1.09005 * 109.46671 * 299.99849 * 7 5 3 30 30 H 1.07999 * 119.92642 * 359.97438 * 9 8 5 31 31 H 1.08006 * 119.96209 * 180.02562 * 10 9 8 32 32 H 1.07997 * 120.03683 * 179.97438 * 11 10 9 33 33 H 0.97008 * 120.00077 * 180.22641 * 13 12 11 34 34 H 1.08994 * 109.46729 * 300.00182 * 14 13 12 35 35 H 1.09005 * 109.46603 * 59.99469 * 14 13 12 36 36 H 0.97001 * 119.99707 * 180.02562 * 18 17 15 37 37 H 1.08002 * 120.03354 * 359.97042 * 23 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7805 -0.8892 7 6 4.1129 0.5816 1.2501 8 6 3.9936 2.7200 -0.0002 9 6 3.6141 3.5530 1.0366 10 6 4.0043 4.8795 1.0401 11 6 4.7745 5.3771 0.0071 12 6 5.1609 4.5422 -1.0335 13 7 5.9437 5.0410 -2.0771 14 6 6.3625 6.4449 -2.0726 15 6 7.1916 6.7258 -3.2991 16 1 7.3868 5.9377 -4.0112 17 6 7.7002 7.9895 -3.5129 18 7 8.4233 8.2347 -4.5837 19 14 7.3620 9.3529 -2.2818 20 1 8.4318 9.3666 -1.2520 21 1 7.3358 10.6603 -2.9857 22 1 6.0494 9.1161 -1.6288 23 6 4.7631 3.2112 -1.0362 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 3.8039 -0.4636 1.2502 28 1 5.2014 0.6383 1.2503 29 1 3.7228 1.0760 2.1399 30 1 3.0115 3.1666 1.8453 31 1 3.7066 5.5272 1.8515 32 1 5.0787 6.4134 0.0103 33 1 6.2102 4.4578 -2.8051 34 1 5.4815 7.0867 -2.0742 35 1 6.9555 6.6442 -1.1800 36 1 8.7814 9.1236 -4.7338 37 1 5.0591 2.5601 -1.8455 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584109008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:13 Heat of formation + Delta-G solvation = -85.778918 kcal Electronic energy + Delta-G solvation = -19108.417873 eV Core-core repulsion = 16042.617498 eV Total energy + Delta-G solvation = -3065.800376 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.73964 -40.25169 -37.70822 -36.89401 -35.13002 -34.31405 -31.59647 -30.31934 -28.61111 -28.29714 -25.74748 -24.33179 -23.29906 -22.57735 -20.73818 -19.38874 -18.51847 -17.91525 -17.58417 -17.06844 -17.04791 -16.45173 -15.91961 -15.30061 -15.21980 -14.80697 -14.63704 -14.45515 -14.26628 -14.11750 -13.70188 -13.31926 -13.04842 -12.96646 -12.86565 -12.65057 -12.53994 -12.14257 -11.90463 -11.78472 -11.73549 -11.57185 -11.31536 -11.03440 -10.73044 -9.68762 -8.40335 -8.17631 -6.47962 0.46266 0.80880 1.19679 1.33634 1.34913 1.46216 1.81565 2.27796 2.78978 2.94290 3.04451 3.52241 3.85768 4.09276 4.16219 4.27072 4.34137 4.35389 4.36999 4.53420 4.63787 4.71026 4.72552 4.83289 4.93203 5.01865 5.06818 5.14095 5.27164 5.31272 5.40047 5.50336 5.65004 5.76150 5.88915 6.15485 6.50672 6.65860 6.75756 7.03383 7.21288 8.75485 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.037985 B = 0.003754 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.954333 B = 7456.917958 C = 7625.121928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.529 6.529 5 C -0.038 4.038 6 H 0.133 0.867 7 C -0.134 4.134 8 C -0.034 4.034 9 C -0.162 4.162 10 C -0.073 4.073 11 C -0.221 4.221 12 C 0.204 3.796 13 N -0.734 5.734 14 C 0.240 3.760 15 C -0.550 4.550 16 H 0.045 0.955 17 C 0.018 3.982 18 N -0.938 5.938 19 Si 0.947 3.053 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.250 1.250 23 C -0.199 4.199 24 H 0.134 0.866 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.123 0.877 31 H 0.138 0.862 32 H 0.109 0.891 33 H 0.397 0.603 34 H 0.012 0.988 35 H 0.014 0.986 36 H 0.272 0.728 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.126 -17.158 13.962 25.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.417 6.417 5 C -0.057 4.057 6 H 0.151 0.849 7 C -0.191 4.191 8 C -0.035 4.035 9 C -0.182 4.182 10 C -0.092 4.092 11 C -0.244 4.244 12 C 0.098 3.902 13 N -0.360 5.360 14 C 0.116 3.884 15 C -0.588 4.588 16 H 0.063 0.937 17 C -0.181 4.181 18 N -0.577 5.577 19 Si 0.769 3.231 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.173 1.173 23 C -0.222 4.222 24 H 0.152 0.848 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.156 0.844 32 H 0.127 0.873 33 H 0.231 0.769 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.081 0.919 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.198 -16.516 13.862 25.281 hybrid contribution 0.079 0.969 -0.528 1.107 sum -13.119 -15.547 13.334 24.323 Atomic orbital electron populations 1.23531 0.75067 1.05655 1.02295 1.86488 1.24681 1.32450 1.83812 1.23971 0.92362 0.81256 0.71474 1.90702 1.67731 1.37436 1.45875 1.20026 0.86568 0.94089 1.04977 0.84932 1.21784 1.02607 1.00953 0.93761 1.19139 0.96303 0.94077 0.94007 1.20688 1.03730 0.93822 1.00007 1.21024 0.95287 0.95751 0.97120 1.20815 1.06752 0.99760 0.97066 1.18190 0.90437 0.93139 0.88417 1.44910 1.55648 1.11494 1.23987 1.19091 0.93548 0.80225 0.95556 1.21340 1.32979 0.97226 1.07257 0.93681 1.25770 0.93818 1.01150 0.97375 1.70017 1.35628 1.23276 1.28794 0.85719 0.80285 0.77965 0.79095 1.18613 1.20231 1.17347 1.20538 1.06401 0.93711 1.01555 0.84825 0.92012 0.92562 0.89268 0.89933 0.91978 0.85912 0.84401 0.87305 0.76852 0.97047 0.96781 0.91914 0.84971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.57 16 2 O -0.36 -6.69 10.47 -51.40 -0.54 -7.23 16 3 C 0.47 10.85 7.12 71.24 0.51 11.35 16 4 O -0.53 -16.14 14.85 21.98 0.33 -15.81 16 5 C -0.04 -0.76 3.00 -12.29 -0.04 -0.80 16 6 H 0.13 2.18 7.87 -2.38 -0.02 2.16 16 7 C -0.13 -1.96 8.94 71.98 0.64 -1.32 16 8 C -0.03 -0.94 4.40 -19.89 -0.09 -1.03 16 9 C -0.16 -4.58 7.93 22.29 0.18 -4.40 16 10 C -0.07 -2.22 10.04 22.25 0.22 -2.00 16 11 C -0.22 -8.00 9.31 22.40 0.21 -7.79 16 12 C 0.20 7.65 6.65 38.21 0.25 7.91 16 13 N -0.73 -31.08 5.72 -343.15 -1.96 -33.04 16 14 C 0.24 11.59 3.73 85.63 0.32 11.91 16 15 C -0.55 -31.30 9.83 25.60 0.25 -31.05 16 16 H 0.04 2.78 7.84 -2.91 -0.02 2.76 16 17 C 0.02 1.05 5.47 84.66 0.46 1.51 16 18 N -0.94 -57.36 13.96 21.45 0.30 -57.06 16 19 Si 0.95 43.25 27.47 68.60 1.88 45.14 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.25 -10.79 6.54 99.48 0.65 -10.13 16 23 C -0.20 -6.24 9.52 22.40 0.21 -6.03 16 24 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 26 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 27 H 0.09 0.98 8.11 -2.39 -0.02 0.96 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.93 7.39 -2.38 -0.02 0.92 16 30 H 0.12 3.05 7.51 -2.91 -0.02 3.03 16 31 H 0.14 3.42 8.06 -2.91 -0.02 3.39 16 32 H 0.11 4.09 6.73 -2.91 -0.02 4.07 16 33 H 0.40 16.19 8.33 -92.70 -0.77 15.41 16 34 H 0.01 0.58 7.00 -2.39 -0.02 0.56 16 35 H 0.01 0.69 7.39 -2.38 -0.02 0.67 16 36 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 37 H 0.13 3.60 7.94 -2.91 -0.02 3.58 16 Total: -1.00 -69.41 314.76 4.58 -64.83 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: 0.24 Total: 23.34 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: 4.33 Total: -20.16 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -1.67 Total: -90.11 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.21 Total: -23.04 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.14 kcal Total: -69.41 4.58 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584109008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.952 kcal (2) G-P(sol) polarization free energy of solvation -69.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds