Wall clock time and date at job start Mon Mar 30 2020 00:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99908 * 2 1 4 4 N 1.46493 * 109.47165 * 124.18177 * 3 2 1 5 5 C 1.46494 * 120.00367 * 86.35038 * 4 3 2 6 6 C 1.50702 * 109.47549 * 95.63498 * 5 4 3 7 7 H 1.07997 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00432 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99851 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00054 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47480 * 90.00365 * 10 8 6 12 12 H 1.48504 * 109.46801 * 210.00494 * 10 8 6 13 13 H 1.48505 * 109.47228 * 329.99723 * 10 8 6 14 14 C 1.34779 * 119.99773 * 266.34578 * 4 3 2 15 15 O 1.21283 * 119.99783 * 355.99848 * 14 4 3 16 16 C 1.50699 * 120.00284 * 175.99923 * 14 4 3 17 17 H 1.09002 * 109.46878 * 332.61351 * 16 14 4 18 18 C 1.53009 * 109.47027 * 92.60955 * 16 14 4 19 19 C 1.50697 * 109.47386 * 212.61383 * 16 14 4 20 20 C 1.34515 * 125.79219 * 119.99780 * 19 16 14 21 21 C 1.41383 * 106.84009 * 179.97438 * 20 19 16 22 22 C 1.34514 * 106.83993 * 0.02562 * 21 20 19 23 23 O 1.34300 * 108.42360 * 359.73198 * 22 21 20 24 24 H 1.07992 * 120.00012 * 5.10183 * 1 2 3 25 25 H 1.08001 * 119.99760 * 185.09446 * 1 2 3 26 26 H 1.08002 * 119.99665 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47268 * 4.17320 * 3 2 1 28 28 H 1.09001 * 109.46510 * 244.17760 * 3 2 1 29 29 H 1.09005 * 109.47256 * 215.63265 * 5 4 3 30 30 H 1.08994 * 109.47329 * 335.63514 * 5 4 3 31 31 H 0.96996 * 119.99739 * 179.97438 * 9 8 6 32 32 H 1.08993 * 109.47033 * 306.28815 * 18 16 14 33 33 H 1.09001 * 109.46646 * 66.29053 * 18 16 14 34 34 H 1.08997 * 109.46598 * 186.28787 * 18 16 14 35 35 H 1.07994 * 126.57492 * 359.96752 * 20 19 16 36 36 H 1.07999 * 126.57897 * 180.02562 * 21 20 19 37 37 H 1.08005 * 125.78645 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9797 1.3400 1.1426 5 6 4.3199 0.7603 1.0249 6 6 5.3074 1.8443 0.6770 7 1 4.9704 2.8632 0.5561 8 6 6.6412 1.5354 0.5141 9 7 7.0517 0.2947 0.6618 10 14 7.8652 2.8792 0.0835 11 1 8.4106 3.4705 1.3317 12 1 8.9748 2.3003 -0.7159 13 1 7.1835 3.9348 -0.7078 14 6 2.5895 1.9056 2.3021 15 8 1.5082 2.4497 2.3777 16 6 3.4968 1.8620 3.5045 17 1 4.1414 0.9852 3.4417 18 6 4.3577 3.1264 3.5400 19 6 2.6651 1.7852 4.7589 20 6 2.7024 0.7945 5.6681 21 6 1.7665 1.1266 6.6743 22 6 1.2128 2.3001 6.3196 23 8 1.7649 2.6970 5.1614 24 1 -0.5400 0.9315 -0.0832 25 1 -0.5400 -0.9316 0.0831 26 1 1.8500 -0.9354 0.0004 27 1 1.3576 2.1322 0.0748 28 1 2.6328 1.3958 -0.9251 29 1 4.6022 0.3024 1.9729 30 1 4.3207 0.0030 0.2411 31 1 7.9900 0.0774 0.5468 32 1 4.8746 3.2408 2.5873 33 1 3.7217 3.9942 3.7149 34 1 5.0900 3.0449 4.3432 35 1 3.3273 -0.0857 5.6354 36 1 1.5396 0.5490 7.5582 37 1 0.4563 2.8350 6.8747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590038510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:42 Heat of formation + Delta-G solvation = -2.551402 kcal Electronic energy + Delta-G solvation = -20195.599733 eV Core-core repulsion = 17133.408373 eV Total energy + Delta-G solvation = -3062.191360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21951 -39.21638 -35.48200 -34.08993 -33.02928 -32.43485 -32.07649 -28.25888 -27.45672 -26.00534 -23.52971 -23.03839 -21.39655 -20.54908 -19.45793 -18.40650 -16.87797 -16.55579 -16.50090 -15.66134 -15.39274 -14.67553 -14.40634 -14.09815 -13.81090 -13.16254 -12.89236 -12.80296 -12.45903 -12.44206 -12.32191 -11.71907 -11.61197 -11.34855 -11.25639 -11.01735 -10.92889 -10.79502 -10.62615 -10.13752 -9.76833 -9.58999 -9.24506 -8.92055 -8.59612 -8.08952 -7.77325 -6.24125 -4.31208 2.08412 2.54180 2.91447 3.19389 3.24185 3.27546 3.31095 3.52223 4.01363 4.29150 4.97864 5.08941 5.27017 5.32107 5.33234 5.36537 5.56674 5.68824 5.76174 5.94184 6.08136 6.15642 6.16718 6.31052 6.34505 6.40636 6.41522 6.66061 6.80551 6.87390 6.92070 7.09941 7.13131 7.47852 7.54313 7.71333 7.99194 8.26632 8.73313 8.97631 9.36255 10.82503 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.007425 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.279896 B = 3770.102432 C = 4950.243865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.159 4.159 3 C 0.142 3.858 4 N -0.591 5.591 5 C 0.235 3.765 6 C -0.538 4.538 7 H 0.064 0.936 8 C 0.068 3.932 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.285 1.285 13 H -0.272 1.272 14 C 0.524 3.476 15 O -0.560 6.560 16 C -0.026 4.026 17 H 0.127 0.873 18 C -0.143 4.143 19 C 0.026 3.974 20 C -0.222 4.222 21 C -0.217 4.217 22 C -0.053 4.053 23 O -0.155 6.155 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.266 0.734 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 0.224 5.827 9.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.179 4.179 3 C 0.019 3.981 4 N -0.321 5.321 5 C 0.115 3.885 6 C -0.576 4.576 7 H 0.082 0.918 8 C -0.136 4.136 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.210 1.210 13 H -0.197 1.197 14 C 0.312 3.688 15 O -0.440 6.440 16 C -0.047 4.047 17 H 0.144 0.856 18 C -0.200 4.200 19 C -0.025 4.025 20 C -0.241 4.241 21 C -0.236 4.236 22 C -0.121 4.121 23 O -0.049 6.049 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.164 0.836 36 H 0.161 0.839 37 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.559 0.652 5.668 9.470 hybrid contribution 0.864 0.219 -0.044 0.893 sum -6.694 0.872 5.624 8.786 Atomic orbital electron populations 1.23744 0.95888 1.01419 1.01644 1.23417 0.96126 0.99452 0.98859 1.20376 0.92815 0.94898 0.90016 1.48157 1.16372 1.57080 1.10524 1.19507 0.76299 0.94331 0.98366 1.21469 0.92181 0.94935 1.49058 0.91780 1.24922 0.98271 0.95576 0.94824 1.69914 1.16511 1.17600 1.48674 0.86562 0.80784 0.81856 0.78750 1.20306 1.21050 1.19712 1.20180 0.86384 0.78017 0.84244 1.90619 1.23621 1.45273 1.84501 1.19936 0.94463 1.03901 0.86435 0.85582 1.21830 0.98792 0.94236 1.05182 1.22108 0.93436 0.89565 0.97439 1.21552 1.04577 1.01545 0.96408 1.21711 1.01245 0.98595 1.02040 1.23950 1.02010 0.98095 0.88066 1.84109 1.43688 1.43579 1.33525 0.88707 0.88948 0.87441 0.90236 0.89772 0.94473 0.94267 0.92427 0.88339 0.92769 0.91955 0.83597 0.83915 0.78690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.82 14.31 29.01 0.42 -2.40 16 2 C -0.16 -2.65 9.85 -36.03 -0.35 -3.00 16 3 C 0.14 2.65 5.89 -5.20 -0.03 2.62 16 4 N -0.59 -12.38 2.45 -176.45 -0.43 -12.81 16 5 C 0.23 5.33 4.98 -5.20 -0.03 5.30 16 6 C -0.54 -13.19 7.55 -34.44 -0.26 -13.45 16 7 H 0.06 1.60 7.24 -52.49 -0.38 1.22 16 8 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.49 13.29 55.43 0.74 -22.76 16 10 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 11 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 14 C 0.52 11.26 6.64 -10.99 -0.07 11.19 16 15 O -0.56 -13.23 15.46 -5.55 -0.09 -13.31 16 16 C -0.03 -0.51 2.55 -92.92 -0.24 -0.75 16 17 H 0.13 2.42 5.84 -51.93 -0.30 2.12 16 18 C -0.14 -2.65 9.15 37.16 0.34 -2.31 16 19 C 0.03 0.48 5.53 -35.63 -0.20 0.29 16 20 C -0.22 -3.64 10.78 -39.70 -0.43 -4.07 16 21 C -0.22 -3.11 10.91 -39.70 -0.43 -3.55 16 22 C -0.05 -0.77 12.09 29.42 0.36 -0.42 16 23 O -0.15 -2.88 10.07 -5.40 -0.05 -2.93 16 24 H 0.09 1.39 7.85 -52.49 -0.41 0.98 16 25 H 0.09 1.19 8.06 -52.49 -0.42 0.77 16 26 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 27 H 0.08 1.51 6.93 -51.93 -0.36 1.15 16 28 H 0.08 1.52 8.10 -51.93 -0.42 1.10 16 29 H 0.04 0.87 5.93 -51.93 -0.31 0.56 16 30 H 0.04 0.93 8.03 -51.93 -0.42 0.52 16 31 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 32 H 0.10 1.99 5.56 -51.93 -0.29 1.70 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.20 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -28.91 318.18 -6.07 -34.98 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -4.98 Total: 6.23 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.03 Total: -8.96 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.30 Total: -35.56 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.14 Total: -16.24 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.91 -6.07 -34.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.432 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds