Wall clock time and date at job start Mon Mar 30 2020 00:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50698 * 119.99908 * 2 1 4 4 N 1.46493 * 109.47165 * 124.18177 * 3 2 1 5 5 C 1.46494 * 120.00367 * 86.35038 * 4 3 2 6 6 C 1.50702 * 109.47549 * 95.63498 * 5 4 3 7 7 H 1.07997 * 119.99740 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00432 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99851 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00054 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47480 * 90.00365 * 10 8 6 12 12 H 1.48504 * 109.46801 * 210.00494 * 10 8 6 13 13 H 1.48505 * 109.47228 * 329.99723 * 10 8 6 14 14 C 1.34779 * 119.99773 * 266.34578 * 4 3 2 15 15 O 1.21283 * 119.99783 * 355.99848 * 14 4 3 16 16 C 1.50699 * 120.00284 * 175.99923 * 14 4 3 17 17 H 1.09002 * 109.46878 * 332.61351 * 16 14 4 18 18 C 1.53009 * 109.47027 * 92.60955 * 16 14 4 19 19 C 1.50697 * 109.47386 * 212.61383 * 16 14 4 20 20 C 1.34515 * 125.79219 * 119.99780 * 19 16 14 21 21 C 1.41383 * 106.84009 * 179.97438 * 20 19 16 22 22 C 1.34514 * 106.83993 * 0.02562 * 21 20 19 23 23 O 1.34300 * 108.42360 * 359.73198 * 22 21 20 24 24 H 1.07992 * 120.00012 * 5.10183 * 1 2 3 25 25 H 1.08001 * 119.99760 * 185.09446 * 1 2 3 26 26 H 1.08002 * 119.99665 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47268 * 4.17320 * 3 2 1 28 28 H 1.09001 * 109.46510 * 244.17760 * 3 2 1 29 29 H 1.09005 * 109.47256 * 215.63265 * 5 4 3 30 30 H 1.08994 * 109.47329 * 335.63514 * 5 4 3 31 31 H 0.96996 * 119.99739 * 179.97438 * 9 8 6 32 32 H 1.08993 * 109.47033 * 306.28815 * 18 16 14 33 33 H 1.09001 * 109.46646 * 66.29053 * 18 16 14 34 34 H 1.08997 * 109.46598 * 186.28787 * 18 16 14 35 35 H 1.07994 * 126.57492 * 359.96752 * 20 19 16 36 36 H 1.07999 * 126.57897 * 180.02562 * 21 20 19 37 37 H 1.08005 * 125.78645 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9797 1.3400 1.1426 5 6 4.3199 0.7603 1.0249 6 6 5.3074 1.8443 0.6770 7 1 4.9704 2.8632 0.5561 8 6 6.6412 1.5354 0.5141 9 7 7.0517 0.2947 0.6618 10 14 7.8652 2.8792 0.0835 11 1 8.4106 3.4705 1.3317 12 1 8.9748 2.3003 -0.7159 13 1 7.1835 3.9348 -0.7078 14 6 2.5895 1.9056 2.3021 15 8 1.5082 2.4497 2.3777 16 6 3.4968 1.8620 3.5045 17 1 4.1414 0.9852 3.4417 18 6 4.3577 3.1264 3.5400 19 6 2.6651 1.7852 4.7589 20 6 2.7024 0.7945 5.6681 21 6 1.7665 1.1266 6.6743 22 6 1.2128 2.3001 6.3196 23 8 1.7649 2.6970 5.1614 24 1 -0.5400 0.9315 -0.0832 25 1 -0.5400 -0.9316 0.0831 26 1 1.8500 -0.9354 0.0004 27 1 1.3576 2.1322 0.0748 28 1 2.6328 1.3958 -0.9251 29 1 4.6022 0.3024 1.9729 30 1 4.3207 0.0030 0.2411 31 1 7.9900 0.0774 0.5468 32 1 4.8746 3.2408 2.5873 33 1 3.7217 3.9942 3.7149 34 1 5.0900 3.0449 4.3432 35 1 3.3273 -0.0857 5.6354 36 1 1.5396 0.5490 7.5582 37 1 0.4563 2.8350 6.8747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590038510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:42 Heat of formation + Delta-G solvation = -17.339223 kcal Electronic energy + Delta-G solvation = -20196.240981 eV Core-core repulsion = 17133.408373 eV Total energy + Delta-G solvation = -3062.832608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.47516 -40.87615 -37.12342 -35.65578 -34.67184 -33.81424 -33.57666 -29.58947 -29.22489 -27.55013 -25.10614 -24.78550 -22.61397 -21.87572 -20.77546 -19.96086 -18.50519 -18.17390 -18.15437 -17.12288 -16.80608 -16.38491 -15.97969 -15.54905 -15.22257 -14.74515 -14.38137 -14.22148 -14.16470 -13.65107 -13.50094 -13.45746 -13.25829 -13.00312 -12.75756 -12.67027 -12.54888 -12.26551 -12.20989 -11.92462 -11.63837 -10.88816 -10.74252 -10.54893 -10.29121 -9.51831 -9.33694 -8.18393 -6.30882 0.82282 1.24885 1.43427 1.46625 1.54258 1.66409 1.75462 2.19944 2.39473 2.50325 3.12789 3.68411 3.69384 4.01866 4.09875 4.16407 4.22444 4.29498 4.34470 4.51625 4.77506 4.81029 4.83806 4.89024 4.96923 5.00422 5.04679 5.16322 5.25029 5.35729 5.64623 5.65169 5.67534 5.77754 5.86552 6.07181 6.31090 6.52187 6.81372 7.26288 7.41274 8.87596 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.007425 C = 0.005655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.279896 B = 3770.102432 C = 4950.243865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.182 4.182 3 C 0.139 3.861 4 N -0.593 5.593 5 C 0.249 3.751 6 C -0.539 4.539 7 H 0.056 0.944 8 C 0.028 3.972 9 N -0.917 5.917 10 Si 0.948 3.052 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.520 3.480 15 O -0.585 6.585 16 C -0.023 4.023 17 H 0.122 0.878 18 C -0.135 4.135 19 C -0.011 4.011 20 C -0.219 4.219 21 C -0.220 4.220 22 C -0.050 4.050 23 O -0.182 6.182 24 H 0.097 0.903 25 H 0.118 0.882 26 H 0.109 0.891 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.032 0.968 30 H 0.026 0.974 31 H 0.268 0.732 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.158 0.842 36 H 0.177 0.823 37 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 0.189 6.972 10.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.201 4.201 3 C 0.017 3.983 4 N -0.322 5.322 5 C 0.129 3.871 6 C -0.577 4.577 7 H 0.074 0.926 8 C -0.172 4.172 9 N -0.556 5.556 10 Si 0.774 3.226 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.197 1.197 14 C 0.308 3.692 15 O -0.467 6.467 16 C -0.043 4.043 17 H 0.140 0.860 18 C -0.193 4.193 19 C -0.062 4.062 20 C -0.238 4.238 21 C -0.238 4.238 22 C -0.117 4.117 23 O -0.078 6.078 24 H 0.115 0.885 25 H 0.136 0.864 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.176 0.824 36 H 0.194 0.806 37 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.255 0.612 6.804 10.715 hybrid contribution 0.964 0.218 -0.360 1.051 sum -7.291 0.830 6.444 9.766 Atomic orbital electron populations 1.23982 0.95237 1.02746 0.98510 1.23270 0.96757 0.98331 1.01733 1.20474 0.92546 0.96094 0.89236 1.48193 1.16071 1.56691 1.11229 1.19206 0.76926 0.93570 0.97430 1.21585 0.92711 0.94847 1.48584 0.92593 1.25534 0.99700 0.97215 0.94799 1.69995 1.16906 1.19032 1.49711 0.85700 0.78778 0.79551 0.78593 1.19649 1.20895 1.19736 1.20588 0.86373 0.77408 0.84790 1.90585 1.24701 1.46410 1.84964 1.19817 0.94322 1.03784 0.86413 0.86046 1.21741 0.98852 0.94047 1.04633 1.21981 0.95150 0.91058 0.98017 1.21903 1.04546 1.01100 0.96298 1.22108 1.00340 0.98817 1.02564 1.24884 1.01751 0.98406 0.86680 1.84076 1.44220 1.44276 1.35240 0.88485 0.86354 0.87251 0.90825 0.89825 0.95058 0.95540 0.92310 0.90312 0.92936 0.90186 0.82419 0.80603 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 14.31 67.78 0.97 -3.74 16 2 C -0.18 -5.97 9.85 25.64 0.25 -5.72 16 3 C 0.14 5.25 5.89 85.63 0.50 5.76 16 4 N -0.59 -25.29 2.45 -830.54 -2.04 -27.33 16 5 C 0.25 11.55 4.98 85.63 0.43 11.98 16 6 C -0.54 -26.76 7.55 25.60 0.19 -26.56 16 7 H 0.06 2.84 7.24 -2.91 -0.02 2.82 16 8 C 0.03 1.43 5.46 84.65 0.46 1.89 16 9 N -0.92 -48.69 13.29 21.45 0.28 -48.40 16 10 Si 0.95 40.46 29.54 68.60 2.03 42.48 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 13 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 14 C 0.52 22.70 6.64 87.66 0.58 23.29 16 15 O -0.58 -27.96 15.46 7.58 0.12 -27.84 16 16 C -0.02 -0.88 2.55 -12.28 -0.03 -0.91 16 17 H 0.12 4.77 5.84 -2.39 -0.01 4.75 16 18 C -0.14 -5.06 9.15 71.99 0.66 -4.40 16 19 C -0.01 -0.42 5.53 24.83 0.14 -0.28 16 20 C -0.22 -6.89 10.78 22.19 0.24 -6.65 16 21 C -0.22 -5.68 10.91 22.19 0.24 -5.44 16 22 C -0.05 -1.33 12.09 66.97 0.81 -0.52 16 23 O -0.18 -6.63 10.07 8.11 0.08 -6.54 16 24 H 0.10 2.70 7.85 -2.91 -0.02 2.67 16 25 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 26 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 27 H 0.07 2.84 6.93 -2.39 -0.02 2.82 16 28 H 0.08 3.09 8.10 -2.39 -0.02 3.07 16 29 H 0.03 1.50 5.93 -2.38 -0.01 1.49 16 30 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 31 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 32 H 0.08 3.23 5.56 -2.39 -0.01 3.22 16 33 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.16 4.41 8.06 -2.91 -0.02 4.38 16 36 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.24 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -61.45 318.18 6.97 -54.47 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 1.05 Total: 24.48 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: 5.45 Total: -11.32 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.75 Total: -75.74 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: 0.20 Total: -34.39 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.48 kcal Total: -61.45 6.97 -54.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590038510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.135 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds