Wall clock time and date at job start Mon Mar 30 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47191 * 2 1 4 4 C 1.50707 * 109.46799 * 119.99949 * 2 1 3 5 5 C 1.38231 * 120.00223 * 59.72904 * 4 2 1 6 6 C 1.38234 * 120.00112 * 179.78529 * 5 4 2 7 7 C 1.38236 * 119.99730 * 0.44428 * 6 5 4 8 8 C 1.38233 * 120.00273 * 359.80422 * 7 6 5 9 9 C 1.38231 * 119.99695 * 239.99829 * 4 2 1 10 10 C 1.52998 * 109.47340 * 239.99951 * 2 1 3 11 11 H 1.09008 * 109.46859 * 300.00217 * 10 2 1 12 12 C 1.52996 * 109.47309 * 180.02562 * 10 2 1 13 13 O 1.42897 * 109.47108 * 304.99871 * 12 10 2 14 14 N 1.46500 * 109.47391 * 59.99883 * 10 2 1 15 15 C 1.34773 * 120.00431 * 205.00423 * 14 10 2 16 16 O 1.21693 * 119.99830 * 359.97438 * 15 14 10 17 17 C 1.46368 * 120.00188 * 179.72417 * 15 14 10 18 18 H 1.08002 * 119.99624 * 0.27750 * 17 15 14 19 19 C 1.40052 * 119.99965 * 180.27115 * 17 15 14 20 20 N 1.30664 * 120.00038 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 119.99598 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47344 * 60.00498 * 21 19 17 23 23 H 1.48508 * 109.46757 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47214 * 299.99964 * 21 19 17 25 25 H 1.09002 * 109.46899 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47131 * 300.00087 * 1 2 3 27 27 H 1.09003 * 109.46937 * 60.00026 * 1 2 3 28 28 H 1.08001 * 119.99773 * 359.97438 * 5 4 2 29 29 H 1.07996 * 119.99846 * 180.27100 * 6 5 4 30 30 H 1.07998 * 119.99430 * 179.83575 * 7 6 5 31 31 H 1.07996 * 120.00362 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.00442 * 359.97438 * 9 4 2 33 33 H 1.09006 * 109.47289 * 64.99617 * 12 10 2 34 34 H 1.09000 * 109.47550 * 184.99676 * 12 10 2 35 35 H 0.96701 * 114.00096 * 179.97438 * 13 12 10 36 36 H 0.97000 * 119.99456 * 24.99985 * 14 10 2 37 37 H 0.96999 * 119.99868 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6938 -2.0322 1.4522 6 6 2.1581 -2.6851 2.5786 7 6 2.9535 -2.0135 3.4881 8 6 3.2879 -0.6903 3.2691 9 6 2.8270 -0.0386 2.1404 10 6 2.0401 -0.7212 -1.2492 11 1 1.6767 -1.7490 -1.2492 12 6 3.5701 -0.7218 -1.2489 13 8 4.0468 0.6201 -1.1312 14 7 1.5518 -0.0307 -2.4454 15 6 1.4231 -0.7030 -3.6064 16 8 1.7129 -1.8837 -3.6611 17 6 0.9295 -0.0146 -4.8000 18 1 0.6727 1.0334 -4.7515 19 6 0.7903 -0.7147 -6.0049 20 7 1.1006 -1.9826 -6.0635 21 14 0.1610 0.1642 -7.5284 22 1 1.0760 1.2836 -7.8676 23 1 0.1054 -0.7915 -8.6637 24 1 -1.1991 0.6990 -7.2651 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.0689 -2.5556 0.7437 29 1 1.8972 -3.7191 2.7495 30 1 3.3141 -2.5229 4.3695 31 1 3.9090 -0.1654 3.9799 32 1 3.0884 0.9952 1.9693 33 1 3.9330 -1.3115 -0.4070 34 1 3.9335 -1.1561 -2.1802 35 1 5.0109 0.6958 -1.1239 36 1 1.3211 0.9104 -2.4018 37 1 1.0039 -2.4676 -6.8979 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591320157.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:22 Heat of formation + Delta-G solvation = -75.753070 kcal Electronic energy + Delta-G solvation = -19921.785899 eV Core-core repulsion = 16856.420277 eV Total energy + Delta-G solvation = -3065.365622 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.63840 -37.79212 -36.09538 -34.71530 -32.57716 -31.72949 -30.79596 -29.03345 -28.21654 -25.89169 -23.63134 -22.52480 -22.00835 -19.95355 -19.17561 -17.39476 -16.79217 -16.49046 -15.34738 -15.27804 -14.92887 -14.72546 -14.02944 -13.98227 -13.60383 -13.15941 -13.10737 -12.78594 -12.40009 -12.26639 -11.96927 -11.83515 -11.62106 -11.15617 -11.12152 -10.96393 -10.58676 -10.49438 -10.40736 -10.23352 -10.18228 -9.45949 -8.82604 -8.80959 -8.55616 -7.58576 -7.42552 -6.15615 -4.60458 1.47900 1.51098 3.17724 3.22405 3.24413 3.89660 4.13040 4.59589 4.67852 4.87374 4.92845 5.05638 5.15472 5.23965 5.30504 5.49943 5.62228 5.66497 5.70545 5.84905 5.92745 6.05263 6.12179 6.19236 6.20748 6.23442 6.48129 6.49825 6.56918 6.62259 6.64472 6.92178 7.12394 7.46391 7.98995 8.03028 8.17599 8.38430 9.05779 9.59702 10.63285 10.82308 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036562 B = 0.004629 C = 0.004561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.641085 B = 6047.595363 C = 6138.063254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 H 0.087 0.913 4 C -0.058 4.058 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.113 4.113 10 C 0.171 3.829 11 H 0.086 0.914 12 C 0.067 3.933 13 O -0.566 6.566 14 N -0.752 5.752 15 C 0.557 3.443 16 O -0.585 6.585 17 C -0.545 4.545 18 H 0.066 0.934 19 C 0.089 3.911 20 N -0.769 5.769 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.366 0.634 36 H 0.382 0.618 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 3.212 15.269 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 H 0.105 0.895 4 C -0.058 4.058 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.131 4.131 10 C 0.064 3.936 11 H 0.104 0.896 12 C -0.012 4.012 13 O -0.370 6.370 14 N -0.406 5.406 15 C 0.361 3.639 16 O -0.468 6.468 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.131 4.131 20 N -0.398 5.398 21 Si 0.731 3.269 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.211 0.789 36 H 0.213 0.787 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.436 2.273 15.106 15.469 hybrid contribution 0.323 0.651 -0.732 1.032 sum 2.759 2.924 14.374 14.926 Atomic orbital electron populations 1.21807 0.94102 1.02187 1.01640 1.20377 0.95907 0.99998 0.91389 0.89517 1.19859 0.96362 0.94020 0.95587 1.21133 1.00167 0.94544 0.97537 1.21116 0.98258 0.99721 0.94725 1.21068 0.99503 0.94988 0.99517 1.21091 1.00410 0.94988 0.97711 1.21081 0.97823 1.00017 0.94148 1.20558 0.90289 0.97490 0.85213 0.89624 1.22726 0.96603 0.82780 0.99132 1.86453 1.25377 1.27995 1.97131 1.46048 1.72628 1.12872 1.09070 1.18189 0.77740 0.86313 0.81667 1.90589 1.55195 1.16480 1.84530 1.20855 1.46664 0.97109 0.93543 0.91545 1.25687 0.93351 0.94440 0.99618 1.70008 1.35359 1.08142 1.26296 0.86462 0.79902 0.79719 0.80805 1.19323 1.20626 1.19309 0.92671 0.93204 0.91453 0.85905 0.86353 0.86628 0.86534 0.86137 0.94584 0.93104 0.78866 0.78652 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.85 37.16 0.33 -1.76 16 2 C -0.06 -0.90 2.01 -91.77 -0.18 -1.08 16 3 H 0.09 1.35 7.29 -51.93 -0.38 0.97 16 4 C -0.06 -0.82 3.61 -104.62 -0.38 -1.20 16 5 C -0.12 -1.61 8.71 -39.59 -0.34 -1.96 16 6 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 7 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 8 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 9 C -0.11 -1.44 9.67 -39.58 -0.38 -1.82 16 10 C 0.17 3.31 1.77 -67.93 -0.12 3.19 16 11 H 0.09 1.85 6.84 -51.92 -0.36 1.50 16 12 C 0.07 1.22 6.50 37.16 0.24 1.47 16 13 O -0.57 -9.24 12.73 -35.23 -0.45 -9.69 16 14 N -0.75 -16.88 4.33 -55.22 -0.24 -17.12 16 15 C 0.56 15.74 7.71 -12.99 -0.10 15.64 16 16 O -0.58 -18.67 14.68 5.20 0.08 -18.59 16 17 C -0.54 -15.46 9.54 -35.63 -0.34 -15.80 16 18 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 19 C 0.09 2.48 5.50 -17.37 -0.10 2.39 16 20 N -0.77 -23.11 11.83 55.55 0.66 -22.45 16 21 Si 0.91 20.29 29.56 -169.99 -5.02 15.27 16 22 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H 0.05 0.84 7.37 -51.93 -0.38 0.45 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.06 7.45 -51.93 -0.39 0.68 16 28 H 0.12 1.74 7.10 -52.49 -0.37 1.37 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.42 7.95 -52.48 -0.42 1.01 16 33 H 0.04 0.60 7.40 -51.93 -0.38 0.22 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.37 4.39 9.12 45.56 0.42 4.81 16 36 H 0.38 7.88 8.37 -40.82 -0.34 7.54 16 37 H 0.27 7.33 8.29 -40.82 -0.34 6.99 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -34.14 313.95 -7.08 -41.22 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.26 Total: 13.11 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -2.57 Total: -6.48 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.42 Total: -39.57 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.37 Total: -28.28 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.14 -7.08 -41.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591320157.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.534 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds