Wall clock time and date at job start Mon Mar 30 2020 00:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46699 * 2 1 4 4 C 1.50694 * 109.47242 * 240.00230 * 2 1 3 5 5 C 1.38240 * 120.00153 * 299.72446 * 4 2 1 6 6 C 1.38226 * 119.99985 * 179.78995 * 5 4 2 7 7 C 1.38242 * 120.00254 * 0.43908 * 6 5 4 8 8 C 1.38230 * 119.99860 * 359.81687 * 7 6 5 9 9 C 1.38236 * 119.99933 * 359.97438 * 8 7 6 10 10 C 1.53001 * 109.46916 * 119.99762 * 2 1 3 11 11 H 1.09001 * 109.46867 * 60.00956 * 10 2 1 12 12 C 1.53004 * 109.46724 * 180.02562 * 10 2 1 13 13 O 1.42895 * 109.47183 * 55.00311 * 12 10 2 14 14 N 1.46497 * 109.47428 * 300.00300 * 10 2 1 15 15 C 1.34776 * 119.99869 * 155.00001 * 14 10 2 16 16 O 1.21680 * 120.00012 * 359.97438 * 15 14 10 17 17 C 1.46376 * 119.99835 * 179.72770 * 15 14 10 18 18 H 1.07999 * 119.99834 * 354.21092 * 17 15 14 19 19 C 1.40040 * 120.00110 * 174.21835 * 17 15 14 20 20 N 1.30671 * 120.00168 * 6.14280 * 19 17 15 21 21 Si 1.86798 * 120.00257 * 186.15016 * 19 17 15 22 22 H 1.48500 * 109.47280 * 94.97989 * 21 19 17 23 23 H 1.48498 * 109.47242 * 214.98082 * 21 19 17 24 24 H 1.48506 * 109.46945 * 334.97736 * 21 19 17 25 25 H 1.08997 * 109.47377 * 299.99829 * 1 2 3 26 26 H 1.09003 * 109.47104 * 60.00189 * 1 2 3 27 27 H 1.09001 * 109.46572 * 179.97438 * 1 2 3 28 28 H 1.08001 * 119.99600 * 359.97438 * 5 4 2 29 29 H 1.08007 * 119.99973 * 180.27434 * 6 5 4 30 30 H 1.08000 * 120.00034 * 179.83020 * 7 6 5 31 31 H 1.07995 * 120.00142 * 180.02562 * 8 7 6 32 32 H 1.08000 * 119.99997 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.46565 * 175.00694 * 12 10 2 34 34 H 1.08999 * 109.46798 * 295.00035 * 12 10 2 35 35 H 0.96697 * 114.00132 * 179.97438 * 13 12 10 36 36 H 0.96998 * 119.99865 * 335.00440 * 14 10 2 37 37 H 0.97003 * 120.00448 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 6 1.7032 -2.0355 -1.4464 6 6 2.1604 -2.6857 -2.5772 7 6 2.9544 -2.0136 -3.4877 8 6 3.2880 -0.6901 -3.2691 9 6 2.8272 -0.0385 -2.1404 10 6 2.0400 -0.7212 1.2493 11 1 1.6768 -1.7489 1.2492 12 6 3.5701 -0.7206 1.2496 13 8 4.0459 0.6217 1.1325 14 7 1.5516 -0.0307 2.4454 15 6 1.4229 -0.7031 3.6064 16 8 1.7119 -1.8838 3.6609 17 6 0.9406 -0.0116 4.8030 18 1 0.7771 1.0557 4.7809 19 6 0.6914 -0.7340 5.9765 20 7 1.0020 -2.0016 6.0419 21 14 -0.0851 0.1143 7.4485 22 1 -1.5543 -0.1003 7.4253 23 1 0.4782 -0.4521 8.7003 24 1 0.2036 1.5699 7.3900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.0863 -2.5617 -0.7330 29 1 1.8995 -3.7198 -2.7482 30 1 3.3139 -2.5225 -4.3698 31 1 3.9079 -0.1649 -3.9805 32 1 3.0875 0.9957 -1.9698 33 1 3.9333 -1.1550 2.1810 34 1 3.9337 -1.3098 0.4078 35 1 5.0098 0.6981 1.1264 36 1 1.3209 0.9105 2.4019 37 1 0.8297 -2.5019 6.8548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591320159.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:26 Heat of formation + Delta-G solvation = -75.806102 kcal Electronic energy + Delta-G solvation = -19922.737330 eV Core-core repulsion = 16857.369409 eV Total energy + Delta-G solvation = -3065.367922 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.64002 -37.79512 -36.09923 -34.71687 -32.58020 -31.73423 -30.79669 -29.03583 -28.21682 -25.89465 -23.63047 -22.52802 -22.00920 -19.95464 -19.17711 -17.39767 -16.79373 -16.49078 -15.34630 -15.28970 -14.93148 -14.72260 -14.02744 -13.97999 -13.60555 -13.16082 -13.10690 -12.78573 -12.39849 -12.29679 -11.96989 -11.83669 -11.62083 -11.14269 -11.12360 -10.99272 -10.57902 -10.51159 -10.39790 -10.22729 -10.16257 -9.46264 -8.83190 -8.81100 -8.55673 -7.58396 -7.42851 -6.16935 -4.60177 1.47792 1.51068 3.15384 3.22760 3.26409 3.89587 4.12947 4.59595 4.66704 4.87506 4.92752 5.05643 5.15483 5.24050 5.30510 5.49617 5.62222 5.66434 5.70429 5.83964 5.92447 6.05089 6.12085 6.19081 6.20740 6.23421 6.47889 6.49824 6.56826 6.62185 6.64395 6.92085 7.12331 7.46720 7.99010 8.02901 8.17501 8.38891 9.05844 9.59368 10.62635 10.81718 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036166 B = 0.004639 C = 0.004571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.026310 B = 6033.934367 C = 6124.538361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 H 0.087 0.913 4 C -0.058 4.058 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.113 4.113 10 C 0.171 3.829 11 H 0.086 0.914 12 C 0.067 3.933 13 O -0.566 6.566 14 N -0.752 5.752 15 C 0.557 3.443 16 O -0.585 6.585 17 C -0.545 4.545 18 H 0.067 0.933 19 C 0.089 3.911 20 N -0.769 5.769 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.054 0.946 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.366 0.634 36 H 0.382 0.618 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.850 3.213 -15.304 15.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 H 0.105 0.895 4 C -0.058 4.058 5 C -0.134 4.134 6 C -0.138 4.138 7 C -0.151 4.151 8 C -0.142 4.142 9 C -0.131 4.131 10 C 0.064 3.936 11 H 0.104 0.896 12 C -0.012 4.012 13 O -0.370 6.370 14 N -0.406 5.406 15 C 0.361 3.639 16 O -0.468 6.468 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.131 4.131 20 N -0.398 5.398 21 Si 0.730 3.270 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.211 0.789 36 H 0.214 0.786 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.410 2.278 -15.144 15.503 hybrid contribution 0.232 0.615 0.704 0.963 sum 2.642 2.893 -14.440 14.962 Atomic orbital electron populations 1.21806 0.94098 1.02183 1.01644 1.20376 0.95914 1.00002 0.91380 0.89514 1.19861 0.96370 0.93988 0.95615 1.21133 1.00226 0.94513 0.97505 1.21117 0.98288 0.99749 0.94672 1.21069 0.99479 0.94987 0.99535 1.21088 1.00428 0.94984 0.97703 1.21081 0.97774 1.00034 0.94175 1.20565 0.90285 0.97498 0.85224 0.89612 1.22726 0.96611 0.82775 0.99138 1.86452 1.25398 1.27973 1.97132 1.46052 1.72605 1.12880 1.09071 1.18202 0.77573 0.86352 0.81770 1.90584 1.54779 1.16664 1.84780 1.20893 1.47382 0.95058 0.94882 0.91449 1.25685 0.93704 0.94508 0.99178 1.70028 1.35242 1.07892 1.26610 0.86393 0.79598 0.80260 0.80701 1.19841 1.20525 1.18896 0.91437 0.93210 0.92681 0.85904 0.86355 0.86626 0.86534 0.86136 0.93101 0.94581 0.78861 0.78636 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.85 37.16 0.33 -1.76 16 2 C -0.06 -0.90 2.01 -91.77 -0.18 -1.08 16 3 H 0.09 1.35 7.29 -51.93 -0.38 0.97 16 4 C -0.06 -0.82 3.61 -104.62 -0.38 -1.20 16 5 C -0.12 -1.61 8.71 -39.59 -0.34 -1.96 16 6 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 7 C -0.13 -1.49 10.05 -39.58 -0.40 -1.88 16 8 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 9 C -0.11 -1.44 9.67 -39.58 -0.38 -1.82 16 10 C 0.17 3.30 1.77 -67.93 -0.12 3.18 16 11 H 0.09 1.85 6.81 -51.93 -0.35 1.50 16 12 C 0.07 1.22 6.50 37.16 0.24 1.46 16 13 O -0.57 -9.22 12.73 -35.23 -0.45 -9.67 16 14 N -0.75 -16.87 4.33 -55.22 -0.24 -17.10 16 15 C 0.56 15.74 7.71 -12.99 -0.10 15.64 16 16 O -0.58 -18.67 14.71 5.21 0.08 -18.59 16 17 C -0.55 -15.48 9.53 -35.63 -0.34 -15.82 16 18 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 19 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 20 N -0.77 -23.09 11.85 55.55 0.66 -22.43 16 21 Si 0.91 20.28 29.56 -169.99 -5.03 15.26 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 25 H 0.07 1.07 7.45 -51.93 -0.39 0.68 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.84 7.40 -51.93 -0.38 0.45 16 28 H 0.12 1.75 7.10 -52.49 -0.37 1.38 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.42 7.95 -52.49 -0.42 1.01 16 33 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.04 0.60 7.40 -51.93 -0.38 0.22 16 35 H 0.37 4.38 9.12 45.56 0.42 4.80 16 36 H 0.38 7.88 8.37 -40.82 -0.34 7.54 16 37 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 LS Contribution 313.98 15.07 4.73 4.73 Total: -1.00 -34.16 313.98 -7.08 -41.24 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -4.26 Total: 13.07 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -2.57 Total: -6.50 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.42 Total: -39.53 kcal Atomic # 8 Polarization: -27.89 SS G_CDS: -0.37 Total: -28.26 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.26 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -34.16 -7.08 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591320159.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.566 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds