Wall clock time and date at job start Sun Mar 29 2020 23:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46951 * 2 1 4 4 H 1.08998 * 109.47019 * 304.99813 * 3 2 1 5 5 C 1.50696 * 109.46888 * 184.99612 * 3 2 1 6 6 H 1.07999 * 120.00361 * 239.99575 * 5 3 2 7 7 C 1.37877 * 120.00084 * 60.00021 * 5 3 2 8 8 N 1.31513 * 120.00026 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00264 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47085 * 59.99891 * 9 7 5 11 11 H 1.48504 * 109.47447 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47118 * 299.99896 * 9 7 5 13 13 N 1.46496 * 109.47317 * 64.99664 * 3 2 1 14 14 C 1.34776 * 120.00318 * 275.00316 * 13 3 2 15 15 O 1.21551 * 119.99927 * 359.97438 * 14 13 3 16 16 C 1.47842 * 120.00253 * 179.97438 * 14 13 3 17 17 C 1.39580 * 120.14441 * 179.97438 * 16 14 13 18 18 C 1.37959 * 119.85323 * 180.02562 * 17 16 14 19 19 C 1.38357 * 120.14376 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.85322 * 179.97438 * 19 18 17 21 21 O 1.42903 * 109.47152 * 90.00527 * 20 19 18 22 22 C 1.38360 * 120.29506 * 0.27294 * 19 18 17 23 23 C 1.37956 * 120.14282 * 359.45196 * 22 19 18 24 24 H 1.09005 * 109.47361 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47592 * 300.00154 * 1 2 3 26 26 H 1.09003 * 109.47052 * 60.00205 * 1 2 3 27 27 H 1.08998 * 109.47109 * 240.00061 * 2 1 3 28 28 H 1.08996 * 109.46689 * 119.99801 * 2 1 3 29 29 H 0.97003 * 120.00775 * 180.02562 * 8 7 5 30 30 H 0.97002 * 120.00297 * 94.99835 * 13 3 2 31 31 H 1.07995 * 120.07412 * 0.02562 * 17 16 14 32 32 H 1.08000 * 119.92723 * 179.97438 * 18 17 16 33 33 H 1.08997 * 109.47198 * 330.00204 * 20 19 18 34 34 H 1.09008 * 109.47393 * 209.99921 * 20 19 18 35 35 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 36 36 H 1.08002 * 119.92808 * 179.69889 * 22 19 18 37 37 H 1.08004 * 120.07344 * 180.24985 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5418 1.4443 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3374 -2.1732 9 14 6.0049 0.8812 -1.3816 10 1 6.5975 0.1473 -0.2346 11 1 6.3979 0.2177 -2.6507 12 1 6.4995 2.2814 -1.3820 13 7 1.6524 2.0975 1.2517 14 6 0.4350 2.6644 1.3669 15 8 -0.3411 2.6326 0.4320 16 6 0.0437 3.3249 2.6303 17 6 -1.2161 3.9134 2.7526 18 6 -1.5749 4.5286 3.9342 19 6 -0.6889 4.5636 4.9963 20 6 -1.0874 5.2379 6.2837 21 8 -1.7133 4.2858 7.1462 22 6 0.5637 3.9876 4.8795 23 6 0.9329 3.3642 3.7055 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0611 -2.9498 30 1 2.2718 2.1233 1.9978 31 1 -1.9084 3.8872 1.9242 32 1 -2.5492 4.9847 4.0300 33 1 -1.7849 6.0474 6.0691 34 1 -0.2005 5.6422 6.7718 35 1 -1.9969 4.6512 7.9954 36 1 1.2524 4.0225 5.7107 37 1 1.9094 2.9115 3.6170 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508690.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:53:35 Heat of formation + Delta-G solvation = -93.015826 kcal Electronic energy + Delta-G solvation = -19383.458378 eV Core-core repulsion = 16317.344186 eV Total energy + Delta-G solvation = -3066.114192 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.23410 -39.69310 -37.45310 -36.90712 -34.43485 -33.33421 -32.29198 -31.84466 -29.08337 -27.28500 -25.07093 -23.61916 -23.42813 -21.82672 -21.05998 -19.45862 -18.31487 -17.89709 -17.40593 -16.68843 -16.44120 -16.28594 -15.97303 -15.59578 -14.83025 -14.65843 -14.52250 -14.37294 -14.15635 -13.68516 -13.56725 -13.24320 -13.15838 -12.91958 -12.65977 -12.23483 -12.14397 -12.08670 -12.06797 -11.61271 -11.08493 -10.92387 -10.79078 -10.53280 -9.97824 -9.95297 -9.61766 -8.16625 -6.34710 -0.19190 0.39583 1.45020 1.47145 1.54922 1.93096 2.34155 2.59067 2.84835 3.12767 3.54359 3.79866 3.90561 3.99483 4.18131 4.31036 4.40806 4.46381 4.54173 4.58197 4.67849 4.72676 4.83261 5.02855 5.04643 5.21847 5.28388 5.39366 5.41890 5.51805 5.53226 5.58957 5.76537 5.87720 5.92825 6.14239 6.71995 6.92976 6.97118 7.31143 7.50679 8.88796 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.030325 B = 0.004327 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.100820 B = 6468.816706 C = 7031.799129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.552 4.552 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.271 1.271 13 N -0.698 5.698 14 C 0.537 3.463 15 O -0.586 6.586 16 C -0.142 4.142 17 C -0.082 4.082 18 C -0.109 4.109 19 C -0.080 4.080 20 C 0.117 3.883 21 O -0.590 6.590 22 C -0.106 4.106 23 C -0.092 4.092 24 H 0.047 0.953 25 H 0.039 0.961 26 H 0.026 0.974 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.266 0.734 30 H 0.402 0.598 31 H 0.124 0.876 32 H 0.151 0.849 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.401 0.599 36 H 0.157 0.843 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 9.249 18.965 21.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.797 3.203 10 H -0.188 1.188 11 H -0.211 1.211 12 H -0.196 1.196 13 N -0.347 5.347 14 C 0.326 3.674 15 O -0.468 6.468 16 C -0.145 4.145 17 C -0.101 4.101 18 C -0.126 4.126 19 C -0.080 4.080 20 C 0.040 3.960 21 O -0.400 6.400 22 C -0.124 4.124 23 C -0.111 4.111 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.238 0.762 31 H 0.142 0.858 32 H 0.169 0.831 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.252 0.748 36 H 0.175 0.825 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.089 8.725 17.615 20.579 hybrid contribution 0.921 0.114 -0.157 0.941 sum -5.169 8.838 17.458 20.239 Atomic orbital electron populations 1.21686 0.97135 0.99201 1.00141 1.21793 0.93638 0.99114 1.01428 1.18421 0.93868 0.89189 0.81083 0.98293 1.21539 0.91221 1.39292 1.06936 0.90968 1.25784 1.03483 0.94230 0.94889 1.70041 1.37242 1.38165 1.09836 0.85399 0.78851 0.78476 0.77616 1.18808 1.21143 1.19637 1.46214 1.15177 1.55529 1.17743 1.18820 0.82109 0.78572 0.87932 1.90700 1.52566 1.61664 1.41914 1.20128 0.97237 1.03087 0.94070 1.21322 0.94790 0.95409 0.98549 1.21258 1.00430 0.99136 0.91817 1.20254 0.93983 0.98022 0.95751 1.21075 0.98106 0.89825 0.86963 1.86523 1.80922 1.39859 1.32653 1.21310 0.96907 0.96659 0.97475 1.21541 0.99209 0.97927 0.92418 0.93409 0.94181 0.95429 0.90690 0.94033 0.92516 0.76212 0.85840 0.83111 0.90656 0.90332 0.74771 0.82543 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.51 71.98 0.61 -5.26 16 2 C -0.12 -6.14 5.45 30.60 0.17 -5.98 16 3 C 0.28 14.66 2.24 44.24 0.10 14.76 16 4 H 0.00 -0.05 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -29.59 8.73 25.60 0.22 -29.37 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -52.78 11.29 21.45 0.24 -52.54 16 9 Si 0.97 42.15 29.54 68.60 2.03 44.17 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 13 N -0.70 -30.44 4.97 -449.00 -2.23 -32.67 16 14 C 0.54 23.19 6.34 86.79 0.55 23.74 16 15 O -0.59 -29.68 13.48 -3.88 -0.05 -29.73 16 16 C -0.14 -4.80 5.87 -20.09 -0.12 -4.91 16 17 C -0.08 -2.48 9.60 22.53 0.22 -2.26 16 18 C -0.11 -2.50 9.68 22.23 0.22 -2.28 16 19 C -0.08 -1.62 5.52 -19.81 -0.11 -1.73 16 20 C 0.12 1.49 7.17 71.24 0.51 2.00 16 21 O -0.59 -8.65 13.64 -148.98 -2.03 -10.68 16 22 C -0.11 -2.23 9.68 22.23 0.22 -2.01 16 23 C -0.09 -2.46 9.54 22.53 0.21 -2.24 16 24 H 0.05 1.97 8.14 -2.38 -0.02 1.96 16 25 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 26 H 0.03 1.39 7.84 -2.39 -0.02 1.37 16 27 H 0.07 4.21 5.95 -2.39 -0.01 4.20 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.40 14.87 6.57 -92.71 -0.61 14.26 16 31 H 0.12 3.96 7.65 -2.91 -0.02 3.93 16 32 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 33 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 34 H 0.08 0.66 8.08 -2.38 -0.02 0.64 16 35 H 0.40 1.64 9.12 -74.06 -0.68 0.97 16 36 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 37 H 0.14 3.32 6.41 -2.91 -0.02 3.30 16 Total: -1.00 -71.90 309.24 1.01 -70.89 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: -0.19 Total: 24.74 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.24 Total: -14.20 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.99 Total: -85.20 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -2.08 Total: -40.41 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -71.90 1.01 -70.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508690.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.122 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds