Wall clock time and date at job start Mon Mar 30 2020 00:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46790 * 2 1 4 4 C 1.50706 * 109.47030 * 240.00391 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99618 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47255 * 120.00071 * 2 1 3 11 11 H 1.08994 * 109.47197 * 179.97438 * 10 2 1 12 12 O 1.42906 * 109.46960 * 60.00153 * 10 2 1 13 13 C 1.52996 * 109.47441 * 300.00114 * 10 2 1 14 14 N 1.46499 * 109.47500 * 184.99895 * 13 10 2 15 15 C 1.34777 * 119.99835 * 180.02562 * 14 13 10 16 16 O 1.21683 * 120.00439 * 359.97438 * 15 14 13 17 17 C 1.46377 * 119.99499 * 180.02562 * 15 14 13 18 18 H 1.07996 * 120.00356 * 359.97438 * 17 15 14 19 19 C 1.40048 * 119.99922 * 179.97438 * 17 15 14 20 20 N 1.30680 * 119.99704 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00404 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46955 * 89.99801 * 21 19 17 23 23 H 1.48496 * 109.47388 * 209.99775 * 21 19 17 24 24 H 1.48500 * 109.46954 * 330.00115 * 21 19 17 25 25 H 1.09001 * 109.47441 * 299.99512 * 1 2 3 26 26 H 1.08994 * 109.47514 * 60.00156 * 1 2 3 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 29 29 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00350 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.99804 * 179.97438 * 9 8 7 33 33 H 0.96696 * 114.00110 * 299.99488 * 12 10 2 34 34 H 1.09000 * 109.46878 * 305.00151 * 13 10 2 35 35 H 1.08999 * 109.46812 * 64.99630 * 13 10 2 36 36 H 0.97000 * 119.99427 * 0.02562 * 14 13 10 37 37 H 0.97001 * 119.99587 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.8270 -0.0385 -2.1405 6 6 3.2882 -0.6903 -3.2689 7 6 2.9551 -2.0140 -3.4872 8 6 2.1612 -2.6862 -2.5767 9 6 1.7009 -2.0348 -1.4478 10 6 2.0400 -0.7212 1.2492 11 1 3.1299 -0.7216 1.2490 12 8 1.5637 -2.0686 1.2491 13 6 1.5300 -0.0001 2.4985 14 7 2.1142 -0.6177 3.6916 15 6 1.8052 -0.1446 4.9152 16 8 1.0415 0.7959 5.0289 17 6 2.3894 -0.7614 6.1072 18 1 3.0675 -1.5958 6.0063 19 6 2.0688 -0.2694 7.3787 20 7 1.2486 0.7405 7.5008 21 14 2.8136 -1.0569 8.9000 22 1 4.0923 -0.3790 9.2327 23 1 1.8708 -0.9219 10.0393 24 1 3.0700 -2.4958 8.6374 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.0912 0.9942 -1.9674 29 1 3.9088 -0.1653 -3.9800 30 1 3.3150 -2.5232 -4.3690 31 1 1.9006 -3.7203 -2.7475 32 1 1.0803 -2.5598 -0.7366 33 1 0.5997 -2.1450 1.2492 34 1 1.8184 1.0502 2.4548 35 1 0.4437 -0.0770 2.5443 36 1 2.7233 -1.3672 3.6008 37 1 1.0263 1.0810 8.3814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598475829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:19 Heat of formation + Delta-G solvation = -77.221923 kcal Electronic energy + Delta-G solvation = -19330.416968 eV Core-core repulsion = 16264.987651 eV Total energy + Delta-G solvation = -3065.429317 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.89474 -37.99698 -36.70101 -33.62283 -33.02467 -32.15597 -30.89652 -29.74483 -27.85452 -26.05512 -24.29108 -22.61877 -21.81988 -20.13098 -19.60597 -17.31906 -16.88877 -16.40067 -15.77719 -15.32784 -15.09287 -14.80181 -14.28060 -14.15649 -13.61608 -13.44090 -13.31505 -13.06550 -12.56223 -12.29021 -12.17814 -11.94850 -11.53887 -11.32341 -11.14914 -11.13270 -10.94066 -10.83692 -10.52365 -10.44226 -10.21385 -9.63778 -8.91636 -8.83273 -8.69209 -7.59977 -7.47114 -6.16707 -4.61490 1.32858 1.40187 3.15803 3.22513 3.26362 3.75653 4.11681 4.36916 4.60488 4.68375 4.73815 4.84763 4.95452 5.03268 5.17143 5.23648 5.39138 5.40849 5.49675 5.55838 5.66496 5.80331 5.89081 5.91090 6.01627 6.06859 6.14005 6.36283 6.44256 6.50325 6.51806 6.66698 6.99466 7.45862 7.74569 7.97700 8.13172 8.36149 9.04880 9.57169 10.62160 10.80827 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042126 B = 0.003665 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.514032 B = 7638.018803 C = 7890.961079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.084 4.084 3 H 0.088 0.912 4 C -0.071 4.071 5 C -0.119 4.119 6 C -0.126 4.126 7 C -0.128 4.128 8 C -0.125 4.125 9 C -0.097 4.097 10 C 0.107 3.893 11 H 0.101 0.899 12 O -0.552 6.552 13 C 0.104 3.896 14 N -0.763 5.763 15 C 0.554 3.446 16 O -0.584 6.584 17 C -0.545 4.545 18 H 0.067 0.933 19 C 0.087 3.913 20 N -0.769 5.769 21 Si 0.908 3.092 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.132 0.868 33 H 0.370 0.630 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.384 0.616 37 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -4.411 -18.911 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 H 0.106 0.894 4 C -0.071 4.071 5 C -0.137 4.137 6 C -0.144 4.144 7 C -0.146 4.146 8 C -0.144 4.144 9 C -0.115 4.115 10 C 0.047 3.953 11 H 0.118 0.882 12 O -0.358 6.358 13 C -0.022 4.022 14 N -0.419 5.419 15 C 0.358 3.642 16 O -0.467 6.467 17 C -0.582 4.582 18 H 0.086 0.914 19 C -0.132 4.132 20 N -0.398 5.398 21 Si 0.733 3.267 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.150 0.850 33 H 0.218 0.782 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.216 0.784 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.454 -3.699 -18.701 19.118 hybrid contribution 0.178 -0.509 0.611 0.815 sum 1.632 -4.209 -18.089 18.644 Atomic orbital electron populations 1.21922 0.93907 1.02239 1.02807 1.20812 0.96810 0.99884 0.92777 0.89386 1.19783 0.97486 0.94414 0.95449 1.21095 0.98216 0.99860 0.94567 1.21068 1.00520 0.95033 0.97772 1.21110 0.99098 0.94934 0.99506 1.21177 0.98532 0.99811 0.94836 1.21278 0.99631 0.94046 0.96538 1.22170 0.99291 0.81932 0.91886 0.88158 1.86590 1.26591 1.26102 1.96534 1.21583 0.98035 0.96937 0.85655 1.46042 1.52529 1.38183 1.05108 1.18224 0.81339 0.83123 0.81515 1.90589 1.39467 1.30761 1.85892 1.20897 1.29645 1.17884 0.89767 0.91431 1.25715 0.93612 0.93906 1.00013 1.70030 1.26237 1.19581 1.23985 0.86372 0.79245 0.80256 0.80871 1.19764 1.20488 1.18892 0.91096 0.92247 0.92383 0.86302 0.86457 0.86591 0.86385 0.85000 0.78170 0.92758 0.92867 0.78445 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.35 37.16 0.31 -1.32 16 2 C -0.08 -0.98 2.53 -91.77 -0.23 -1.21 16 3 H 0.09 1.00 7.88 -51.93 -0.41 0.59 16 4 C -0.07 -0.83 4.78 -104.62 -0.50 -1.33 16 5 C -0.12 -1.31 9.67 -39.58 -0.38 -1.69 16 6 C -0.13 -1.27 10.05 -39.59 -0.40 -1.67 16 7 C -0.13 -1.28 10.05 -39.58 -0.40 -1.68 16 8 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 9 C -0.10 -1.11 8.30 -39.58 -0.33 -1.44 16 10 C 0.11 1.49 2.78 -26.73 -0.07 1.42 16 11 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 12 O -0.55 -7.57 10.56 -35.23 -0.37 -7.94 16 13 C 0.10 1.91 4.81 -4.04 -0.02 1.89 16 14 N -0.76 -17.23 5.50 -61.72 -0.34 -17.57 16 15 C 0.55 15.96 7.75 -12.99 -0.10 15.86 16 16 O -0.58 -19.04 15.02 5.20 0.08 -18.96 16 17 C -0.54 -15.65 9.54 -35.63 -0.34 -15.99 16 18 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 19 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 20 N -0.77 -23.31 11.83 55.55 0.66 -22.66 16 21 Si 0.91 20.39 29.56 -169.99 -5.02 15.36 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 25 H 0.07 0.84 6.54 -51.93 -0.34 0.50 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.56 6.03 -51.93 -0.31 0.25 16 28 H 0.12 1.13 7.95 -52.49 -0.42 0.71 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.43 5.50 -52.48 -0.29 1.15 16 33 H 0.37 4.22 7.00 45.56 0.32 4.54 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.05 1.01 6.71 -51.93 -0.35 0.66 16 36 H 0.38 7.94 8.45 -40.82 -0.35 7.60 16 37 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -34.94 308.74 -7.53 -42.47 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -4.22 Total: 11.16 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.96 Total: -6.52 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.32 Total: -40.22 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.29 Total: -26.90 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.94 -7.53 -42.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598475829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.748 kcal (2) G-P(sol) polarization free energy of solvation -34.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds