Wall clock time and date at job start Mon Mar 30 2020 00:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.46790 * 2 1 4 4 C 1.50706 * 109.47030 * 240.00391 * 2 1 3 5 5 C 1.38234 * 120.00196 * 120.00088 * 4 2 1 6 6 C 1.38235 * 119.99814 * 179.97438 * 5 4 2 7 7 C 1.38230 * 120.00326 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.00092 * 359.97438 * 7 6 5 9 9 C 1.38234 * 119.99618 * 359.97438 * 8 7 6 10 10 C 1.52997 * 109.47255 * 120.00071 * 2 1 3 11 11 H 1.08994 * 109.47197 * 179.97438 * 10 2 1 12 12 O 1.42906 * 109.46960 * 60.00153 * 10 2 1 13 13 C 1.52996 * 109.47441 * 300.00114 * 10 2 1 14 14 N 1.46499 * 109.47500 * 184.99895 * 13 10 2 15 15 C 1.34777 * 119.99835 * 180.02562 * 14 13 10 16 16 O 1.21683 * 120.00439 * 359.97438 * 15 14 13 17 17 C 1.46377 * 119.99499 * 180.02562 * 15 14 13 18 18 H 1.07996 * 120.00356 * 359.97438 * 17 15 14 19 19 C 1.40048 * 119.99922 * 179.97438 * 17 15 14 20 20 N 1.30680 * 119.99704 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 120.00404 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.46955 * 89.99801 * 21 19 17 23 23 H 1.48496 * 109.47388 * 209.99775 * 21 19 17 24 24 H 1.48500 * 109.46954 * 330.00115 * 21 19 17 25 25 H 1.09001 * 109.47441 * 299.99512 * 1 2 3 26 26 H 1.08994 * 109.47514 * 60.00156 * 1 2 3 27 27 H 1.09004 * 109.47334 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99516 * 0.24808 * 5 4 2 29 29 H 1.08000 * 119.99297 * 179.97438 * 6 5 4 30 30 H 1.08001 * 120.00350 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.00235 * 179.97438 * 8 7 6 32 32 H 1.08005 * 119.99804 * 179.97438 * 9 8 7 33 33 H 0.96696 * 114.00110 * 299.99488 * 12 10 2 34 34 H 1.09000 * 109.46878 * 305.00151 * 13 10 2 35 35 H 1.08999 * 109.46812 * 64.99630 * 13 10 2 36 36 H 0.97000 * 119.99427 * 0.02562 * 14 13 10 37 37 H 0.97001 * 119.99587 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 6 2.8270 -0.0385 -2.1405 6 6 3.2882 -0.6903 -3.2689 7 6 2.9551 -2.0140 -3.4872 8 6 2.1612 -2.6862 -2.5767 9 6 1.7009 -2.0348 -1.4478 10 6 2.0400 -0.7212 1.2492 11 1 3.1299 -0.7216 1.2490 12 8 1.5637 -2.0686 1.2491 13 6 1.5300 -0.0001 2.4985 14 7 2.1142 -0.6177 3.6916 15 6 1.8052 -0.1446 4.9152 16 8 1.0415 0.7959 5.0289 17 6 2.3894 -0.7614 6.1072 18 1 3.0675 -1.5958 6.0063 19 6 2.0688 -0.2694 7.3787 20 7 1.2486 0.7405 7.5008 21 14 2.8136 -1.0569 8.9000 22 1 4.0923 -0.3790 9.2327 23 1 1.8708 -0.9219 10.0393 24 1 3.0700 -2.4958 8.6374 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.0912 0.9942 -1.9674 29 1 3.9088 -0.1653 -3.9800 30 1 3.3150 -2.5232 -4.3690 31 1 1.9006 -3.7203 -2.7475 32 1 1.0803 -2.5598 -0.7366 33 1 0.5997 -2.1450 1.2492 34 1 1.8184 1.0502 2.4548 35 1 0.4437 -0.0770 2.5443 36 1 2.7233 -1.3672 3.6008 37 1 1.0263 1.0810 8.3814 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598475829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:18 Heat of formation + Delta-G solvation = -102.572471 kcal Electronic energy + Delta-G solvation = -19331.516250 eV Core-core repulsion = 16264.987651 eV Total energy + Delta-G solvation = -3066.528599 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86632 -39.47815 -38.35532 -34.98049 -34.59800 -34.26021 -31.68083 -30.82305 -29.35194 -27.84057 -25.54259 -23.44989 -22.92673 -21.74236 -21.01577 -19.26470 -17.91997 -17.48593 -17.39373 -16.88646 -16.20927 -16.02878 -15.71555 -15.56330 -14.89241 -14.84555 -14.51722 -14.19691 -14.06003 -13.59338 -13.26638 -13.16008 -13.04744 -12.80883 -12.62399 -12.58697 -12.36868 -12.07574 -12.01518 -11.86908 -11.57016 -10.93398 -10.77543 -9.89095 -9.71445 -9.51140 -9.46859 -8.29548 -6.85824 0.51812 0.60463 1.40235 1.41723 1.57206 2.24956 2.46715 2.89623 3.07638 3.48067 3.60781 3.69240 3.86212 4.01283 4.16469 4.20832 4.24725 4.40083 4.45645 4.48234 4.70242 4.75878 4.78022 4.94291 5.01748 5.06591 5.21230 5.26220 5.31683 5.34604 5.66118 5.71744 5.82640 5.87658 6.21026 6.22677 6.27718 6.72160 6.86541 7.54250 8.48613 8.66923 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.042126 B = 0.003665 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.514032 B = 7638.018803 C = 7890.961079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.075 4.075 3 H 0.090 0.910 4 C -0.084 4.084 5 C -0.132 4.132 6 C -0.132 4.132 7 C -0.132 4.132 8 C -0.135 4.135 9 C -0.111 4.111 10 C 0.126 3.874 11 H 0.098 0.902 12 O -0.556 6.556 13 C 0.105 3.895 14 N -0.751 5.751 15 C 0.537 3.463 16 O -0.633 6.633 17 C -0.575 4.575 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.822 5.822 21 Si 0.999 3.001 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.250 1.250 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.129 0.871 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.381 0.619 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.394 0.606 37 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -5.927 -19.666 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.094 4.094 3 H 0.108 0.892 4 C -0.084 4.084 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.150 4.150 8 C -0.153 4.153 9 C -0.128 4.128 10 C 0.066 3.934 11 H 0.116 0.884 12 O -0.363 6.363 13 C -0.020 4.020 14 N -0.405 5.405 15 C 0.341 3.659 16 O -0.521 6.521 17 C -0.612 4.612 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.818 3.182 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.173 1.173 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.156 0.844 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.231 0.769 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.228 0.772 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.612 -5.248 -19.514 20.376 hybrid contribution -0.187 -0.047 0.728 0.753 sum 2.424 -5.295 -18.786 19.668 Atomic orbital electron populations 1.21898 0.93282 1.02912 1.02523 1.20684 0.97298 0.99656 0.91733 0.89185 1.19762 0.98387 0.94724 0.95534 1.21322 0.98182 1.00555 0.94894 1.21382 1.00422 0.95342 0.97798 1.21451 0.98467 0.95026 1.00049 1.21455 0.98483 1.00740 0.94620 1.21400 1.00107 0.94137 0.97192 1.21911 0.98926 0.81877 0.90655 0.88450 1.86571 1.27721 1.25591 1.96441 1.21756 0.97571 0.96644 0.86058 1.45734 1.51986 1.37942 1.04884 1.18596 0.81009 0.82787 0.83515 1.90542 1.41601 1.32854 1.87080 1.21441 1.30335 1.18712 0.90686 0.89708 1.26983 0.93573 0.94106 1.04029 1.70190 1.27948 1.21497 1.25498 0.85006 0.78348 0.79561 0.75283 1.18586 1.19666 1.17341 0.92623 0.91203 0.91283 0.85351 0.84381 0.84340 0.84772 0.84899 0.76938 0.94109 0.93550 0.77202 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 8.35 71.98 0.60 -2.51 16 2 C -0.07 -1.69 2.53 -11.54 -0.03 -1.72 16 3 H 0.09 2.00 7.88 -2.39 -0.02 1.98 16 4 C -0.08 -1.85 4.78 -19.86 -0.09 -1.95 16 5 C -0.13 -2.68 9.67 22.27 0.22 -2.46 16 6 C -0.13 -2.37 10.05 22.27 0.22 -2.14 16 7 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 8 C -0.14 -2.58 10.05 22.27 0.22 -2.35 16 9 C -0.11 -2.37 8.30 22.27 0.18 -2.18 16 10 C 0.13 3.47 2.78 30.59 0.09 3.56 16 11 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 12 O -0.56 -14.70 10.56 -148.98 -1.57 -16.27 16 13 C 0.10 3.94 4.81 86.38 0.42 4.35 16 14 N -0.75 -34.43 5.50 -467.42 -2.57 -37.00 16 15 C 0.54 31.73 7.75 86.36 0.67 32.40 16 16 O -0.63 -42.91 15.02 -4.29 -0.06 -42.97 16 17 C -0.58 -33.30 9.54 24.83 0.24 -33.06 16 18 H 0.08 4.44 7.85 -2.91 -0.02 4.42 16 19 C 0.03 1.59 5.50 85.30 0.47 2.06 16 20 N -0.82 -50.87 11.83 21.84 0.26 -50.61 16 21 Si 1.00 41.49 29.56 68.60 2.03 43.52 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 24 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 25 H 0.05 1.33 6.54 -2.39 -0.02 1.31 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.07 1.27 6.03 -2.38 -0.01 1.25 16 28 H 0.13 2.26 7.95 -2.91 -0.02 2.24 16 29 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 30 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 31 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 32 H 0.13 2.71 5.50 -2.91 -0.02 2.69 16 33 H 0.38 8.32 7.00 -74.06 -0.52 7.80 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.05 1.82 6.71 -2.39 -0.02 1.80 16 36 H 0.39 16.28 8.45 -92.71 -0.78 15.49 16 37 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 Total: -1.00 -76.72 308.74 1.30 -75.43 By element: Atomic # 1 Polarization: 36.22 SS G_CDS: -0.21 Total: 36.01 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 3.42 Total: -8.10 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -2.31 Total: -87.62 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -1.64 Total: -59.24 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -76.72 1.30 -75.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598475829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.146 kcal (2) G-P(sol) polarization free energy of solvation -76.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds